ArTourter fac047ea05 academic/cdo: Updated for version 2.3.0. ... Signed-off-by: ArTourter <artourter@gmail.com> Signed-off-by: Andrew Clemons <andrew.clemons@gmail.com> Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>		2023-10-21 17:20:14 +07:00
..
3D-ICE	academic/3D-ICE: Added (Thermal Emulator Library).	2022-12-03 11:30:33 +07:00
abntex	academic/abntex: Updated for version 20200715_f0a4d3c.	2022-02-27 22:29:04 -06:00
acl2	academic/acl2: Added (Computational Logic for LiSP).	2023-07-18 09:31:16 +07:00
aenig4
aeskulap	academic/aeskulap: Fix shebang.	2022-04-09 15:45:58 +07:00
aline	academic/aline: update source.	2023-09-11 22:18:50 +07:00
aliview	academic/aliview: Updated for version 1.28.	2022-07-29 21:57:48 +07:00
AlphaPlot	academic/AlphaPlot: Added (data analysis and visualization)	2022-04-30 13:51:47 +07:00
amd	academic/amd: Align with template.	2023-05-20 11:17:28 +07:00
amplicon
amplifx	academic/amplifx: Fix ARCH section.	2023-05-20 11:17:57 +07:00
antiprism	academic/antiprism: Change i486 to i586	2022-06-07 02:23:02 -04:00
archaeopteryx	academic/archaeopteryx: Use zulu-openjdk11.	2022-03-03 15:56:50 +07:00
aris	academic/aris: New maintainer. Update patch.	2022-08-13 10:40:37 +07:00
arka
armadillo	academic/armadillo: Fix download URL, doc dir.	2022-04-02 12:27:10 -04:00
arpack	academic/arpack: Change i486 to i586	2022-06-07 02:23:02 -04:00
arpack-ng	academic/arpack-ng: Updated for version 3.9.0	2023-08-19 09:15:34 +07:00
artha
avl
avogadroapp	academic/avogadroapp: Updated for version 1.97.0.	2022-08-13 10:40:39 +07:00
avogadrolibs	academic/avogadrolibs: Add VTK as optional dependency.	2023-04-15 07:15:24 +07:00
bcftools	academic/bcftools: Upgrade to version 1.18	2023-09-23 08:31:12 +07:00
bedGraphToBigWig	academic/bedGraphToBigWig: Strip binary.	2022-04-04 12:54:04 -04:00
bedtools	academic/bedtools: Updated for version 2.31.0.	2023-06-20 19:46:04 +07:00
biblesync
bibletime	academic/bibletime: Update email address.	2022-06-09 13:19:35 -04:00
bibus
biopython	academic/biopython: Updated for version 1.81.	2023-04-22 11:38:31 +07:00
boinc	academic/boinc: Fix rc.boinc variables, remove extraneous characters	2023-05-13 19:27:30 +07:00
bowtie	academic/bowtie: Updated for version 1.3.1.	2022-10-15 10:47:26 +07:00
bowtie2	academic/bowtie2: Updated for version 2.5.1.	2023-04-15 07:15:38 +07:00
bowtie2-legacy	academic/bowtie2-legacy: Patch source.	2022-03-03 09:38:11 +00:00
bpp-core	academic/bpp-core: Added (Bio++ Core Library)	2022-09-08 08:11:03 +01:00
bpp-phyl	academic/bpp-phyl: Added (Bio++ Phylogenetic Library)	2022-09-08 08:11:03 +01:00
bpp-phyl-omics	academic/bpp-phyl-omics: Added (Bio++ Phylogenetic Omics Library)	2022-09-08 08:11:04 +01:00
bpp-popgen	academic/bpp-popgen: Added (Bio++ Population Genetics Library)	2022-09-08 08:11:04 +01:00
bpp-seq	academic/bpp-seq: Added (Bio++ Sequence library)	2022-09-08 08:11:03 +01:00
bpp-seq-omics	academic/bpp-seq-omics: Added (Bio++ Sequence Omics Library)	2022-09-08 08:11:03 +01:00
bpp1.9-numcalc	academic/bpp1.9-numcalc: Added (Bio++ 1.9 NumCalc Library)	2022-09-09 02:55:53 +01:00
bpp1.9-phyl	academic/bpp1.9-phyl: Added (Bio++ 1.9 Phyl Library)	2022-09-09 03:07:45 +01:00
bpp1.9-seq	academic/bpp1.9-seq: Added (Bio++ 1.9 Seq Library)	2022-09-09 02:58:46 +01:00
bpp1.9-utils	academic/bpp1.9-utils: Added (Bio++ 1.9 Utils Library)	2022-09-09 02:53:27 +01:00
bppsuite	academic/bppsuite: Added (Bio++ program suite)	2022-09-08 08:11:04 +01:00
btf	academic/btf: Align with template.	2023-05-20 11:17:28 +07:00
bwa
cadabra2	academic/cadabra2: Updated for version 2.4.4.	2023-09-09 10:14:14 +07:00
CAFS_divergence	academic/CAFS_divergence: Fix ARCH section.	2023-05-20 11:17:57 +07:00
calc	academic/calc: Updated for version 2.14.1.5.	2023-05-27 08:08:51 +07:00
calcoo	various: Use zulu jdk builds for REQUIRES.	2022-03-03 15:56:51 +07:00
camd	academic/camd: Align with template.	2023-05-20 11:17:28 +07:00
cap3	academic/cap3: DOWLOAD updated.	2022-08-06 20:16:08 +07:00
CAPS_coevolution	academic/CAPS_coevolution: Fix ARCH section.	2023-05-20 11:17:57 +07:00
cblas	academic/cblas: Align with template.	2023-05-20 11:17:28 +07:00
ccolamd	academic/ccolamd: Align with template.	2023-05-20 11:17:29 +07:00
cdo	academic/cdo: Updated for version 2.3.0.	2023-10-21 17:20:14 +07:00
celestia	academic/celestia: Wrap README at 72 columns.	2022-03-12 14:34:16 -05:00
chartgeany
chemtool	academic/chemtool: Fix build failure with gcc10.	2022-02-21 02:41:03 -06:00
cholmod	academic/cholmod: Align with template.	2023-05-20 11:17:29 +07:00
cistrome-CEAS
cistrome-conductGO
cistrome-extra
cistrome-MACS	academic/cistrome-MACS: update source.	2023-09-11 22:18:50 +07:00
cistrome-mdseqpos	academic/cistrome-mdseqpos: Fix deps.	2022-11-12 22:33:12 +07:00
clark-ugene
cld2
clustalo	academic/clustalo: Remove .la files.	2022-03-08 09:44:26 +07:00
clustalw
clustalx	academic/clustalx: Updated to use qmake-qt5. BUILD bumped.	2022-08-06 20:16:07 +07:00
colamd	academic/colamd: Align with template.	2023-05-20 11:17:29 +07:00
colin	academic/colin: Use template TMP assignment.	2023-05-20 11:17:27 +07:00
convertall	academic/convertall: Fix docs.	2022-04-05 12:28:40 -04:00
copasi	academic/copasi: Updated for version 4.40.278.	2023-06-10 14:01:22 +07:00
cryptominisat	academic/cryptominisat: Updated for version 5.11.3.	2022-10-15 10:47:22 +07:00
csparse	academic/csparse: Align with template.	2023-05-20 11:17:29 +07:00
cufflinks	academic/cufflinks: Fix info file.	2022-03-12 11:26:42 +13:00
cutadapt
cvc4	various: Use zulu jdk builds for REQUIRES.	2022-03-03 15:56:51 +07:00
cxsparse	academic/cxsparse: Align with template.	2023-05-20 11:17:29 +07:00
dakota	academic/dakota: Updated for version 6.17.0.	2023-01-28 08:23:05 +07:00
Data2FCS	academic/Data2FCS: Use zulu-openjdk11.	2022-03-03 15:56:48 +07:00
datamash	academic/datamash: Updated for version 1.8.	2022-09-04 04:44:58 +01:00
DendroPy	academic/DendroPy: Updated for version 4.5.1.	2022-09-08 08:11:03 +01:00
diamond
dimod	academic/dimod: Added (A shared API for samplers)	2022-11-12 22:32:58 +07:00
DRAMPower	academic/DRAMPower: Fix github tarball handling.	2022-11-26 09:11:46 +07:00
DRAMSim2	academic/DRAMSim2: Added (A cycle accurate DRAM simulator)	2022-10-15 10:47:28 +07:00
DRAMsim3	academic/DRAMsim3: Fix github tarball handling.	2022-11-05 21:15:16 +07:00
DRAMSys	academic/DRAMSys: Fix github tarball handling.	2023-01-07 08:13:28 +07:00
ds9	academic/ds9: Updated for version 8.4.1.	2023-02-04 07:19:56 +07:00
dwave-cloud-client	academic/dwave-cloud-client: Added (REST interface for D-Wave API)	2022-11-12 22:32:58 +07:00
dwave-greedy	academic/dwave-greedy: Added (steepest descent solver for (BQM))	2022-11-12 22:32:58 +07:00
dwave-hybrid	academic/dwave-hybrid: Added (Hybrid Async Decomposition Sampler)	2022-11-12 22:32:59 +07:00
dwave-inspector	academic/dwave-inspector: Added (visualize D-Wave structured solver)	2022-11-12 22:32:59 +07:00
dwave-neal	academic/dwave-neal: Update DEP.	2023-04-29 09:30:05 +07:00
dwave-networkx	academic/dwave-networkx: Added (D-Wave Systems network exploration)	2022-11-12 22:32:59 +07:00
dwave-ocean-sdk	academic/dwave-ocean-sdk: Fix deps.	2022-11-19 10:08:09 +07:00
dwave-preprocessing	academic/dwave-preprocessing: Added (binary quadratic models tools)	2022-11-12 22:32:59 +07:00
dwave-system	academic/dwave-system: Added (basic API for D-Wave system)	2022-11-12 22:32:59 +07:00
dwave-tabu	academic/dwave-tabu: Added (C/C++ implementation of MST2 for QUBO)	2022-11-12 22:32:59 +07:00
dwavebinarycsp	academic/dwavebinarycsp: Added (contruct binary quadratic models)	2022-11-12 22:32:58 +07:00
easy_spice
ed-v6	Daves unified names	2023-05-06 08:28:36 +07:00
edsim51di	academic/edsim51di: Update DOWNLOAD to https.	2022-03-04 02:48:05 +00:00
elk	academic/elk: Fix SlackBuild permissions.	2022-11-12 22:33:05 +07:00
EMBASSY	academic/EMBASSY: Update binaries location.	2022-07-29 22:21:46 +07:00
EMBOSS	academic/EMBOSS: Update binaries location.	2022-07-29 22:20:39 +07:00
engauge	academic/engauge: Updated for version 12.1.	2022-02-27 22:29:05 -06:00
ent	academic/ent: Update email address.	2022-06-08 12:25:40 -04:00
ephem	academic/ephem: Added (an astronomy program).	2023-08-12 09:46:19 +09:00
eprover
equalx	academic/equalx: Update email address.	2022-06-08 12:25:40 -04:00
ess
evopedia_qt	academic/evopedia_qt: Use qt4.	2022-02-27 22:29:05 -06:00
exonerate
extrema	academic/extrema: Remove .la files.	2022-03-08 09:44:26 +07:00
fann	academic/fann: Change i486 to i586	2022-06-07 02:23:03 -04:00
fastqc	academic/fastqc: cleanup doinst.sh, info updated	2023-09-23 08:31:12 +07:00
FastTree	academic/FastTree: Added (Infers approximately-ML phylogenetic).	2023-09-11 15:05:54 +07:00
FCSalyzer	academic/FCSalyzer: Handle url-encoded filenames.	2022-03-05 00:17:45 +13:00
fet	academic/fet: Updated for version 6.9.7.	2023-10-19 13:45:04 +07:00
FigTree	academic/FigTree: Add (A graphical viewer of phylogenetic trees).	2023-09-11 14:31:54 +07:00
fiji	academic/fiji: Updated for version 20230801_1717.	2023-09-17 00:10:15 +07:00
finchtv	academic/finchtv: Fix ARCH section.	2023-05-20 11:17:56 +07:00
fityk	academic/fityk: Updated for version 1.3.2.	2023-04-08 09:16:26 +07:00
flann	academic/flann: Fix building with the newer cmake, cleanups.	2022-02-06 15:47:07 +07:00
flexbar
free42
FreeFem	academic/FreeFem: Fix MD5SUM.	2023-07-08 16:41:49 +07:00
g3data	academic/g3data: Fix DOWNLOAD.	2023-09-17 00:10:23 +07:00
Gabedit	academic/Gabedit: Install references.	2022-07-09 10:06:07 +07:00
gaiasky	academic/gaiasky: Updated for version 3.5.3.	2023-09-23 08:42:57 +07:00
galculator
gaw3	academic/gaw3: Updated for version 20220315.	2023-04-01 09:14:08 +07:00
Gblocks	academic/Gblocks: Update script.	2023-09-13 21:34:07 +07:00
gchemutils	academic/gchemutils: Fix typo in script.	2022-03-09 14:41:35 -05:00
gcompris-qt	academic/gcompris-qt: Updated for version 3.3.	2023-06-10 09:28:37 +07:00
geda-gaf	academic/geda-gaf: Remove .la files.	2022-03-08 09:44:26 +07:00
gelemental	academic/gelemental: Updated for version 2.0.2.	2023-04-22 11:38:28 +07:00
gem5	academic/gem5: Added (open-source system-level & CPU simulator)	2022-10-29 10:28:33 +07:00
geneconv
genius	academic/genius: Updated for version 1.0.27.	2022-02-27 22:29:05 -06:00
genometools	academic/genometools: Updated for version 1.6.2.	2022-09-04 04:51:14 +01:00
genpak	academic/genpak: Fix docs.	2022-04-09 15:45:11 +07:00
GeoGebra	academic/GeoGebra: Use zulu-openjdk7.	2022-03-03 15:56:45 +07:00
geomview	academic/geomview: Updated for version 1.9.5.	2023-02-04 07:19:52 +07:00
gephi	academic/gephi: Added (Open Graph Viz Platform).	2023-07-19 10:00:21 +07:00
gerbv	academic/gerbv: Remove .la files.	2022-03-08 09:44:27 +07:00
getdp	academic/getdp: Updated for version 3.5.0.	2022-08-13 10:40:35 +07:00
getfem	academic/getfem: Fix deps.	2022-11-12 22:33:19 +07:00
ggobi	academic/ggobi: Updated for version 2.1.11.	2022-03-09 17:20:42 +07:00
ghemical	academic/ghemical: Fix build.	2022-02-27 22:29:05 -06:00
glpk	academic/glpk: Remove .la files.	2022-03-08 09:44:25 +07:00
glvis	academic/glvis: Added (finite element visualization tool).	2022-11-25 14:22:50 +07:00
gmsh	academic/gmsh: Updated for version 4.11.1.	2023-01-14 08:50:10 +07:00
gnucap
gp2fasta	academic/gp2fasta: Change i486 to i586	2022-06-07 02:23:03 -04:00
gpredict	academic/gpredict: revert to latest stable version 2.2.1	2022-02-24 22:05:13 +07:00
grace	academic/grace: Update download url.	2022-09-10 15:19:08 +07:00
gresistor	academic/gresistor: Align with template.	2023-05-20 11:17:29 +07:00
gretl	academic/gretl: Remove .la files.	2022-03-08 09:44:27 +07:00
gri
Gridcoin-Research	academic/Gridcoin-Research: Updated for version 5.4.5.0	2023-04-29 18:11:56 +07:00
gromacs	academic/gromacs: Minor template nitpick.	2023-02-18 10:07:13 +07:00
grpn	academic/grpn: Change i486 to i586	2022-06-07 02:23:03 -04:00
gspiceui	academic/gspiceui: Updated for version 1.2.87.	2023-06-03 10:38:23 +07:00
gtkwave	academic/gtkwave: Updated for version 3.3.111.	2022-02-27 22:29:05 -06:00
gtypist	academic/gtypist: Updated maintainer info.	2022-11-18 22:02:50 +07:00
gwyddion	academic/gwyddion: Updated for version 2.63.	2023-06-22 23:08:54 +07:00
h5utils	academic/h5utils: Updated for version 1.13.2.	2023-02-18 10:06:44 +07:00
harminv	academic/harminv: Updated for version 1.4.2.	2023-02-18 10:06:44 +07:00
HMMER	academic/HMMER: Updated for version 3.4.	2023-09-13 21:53:45 +07:00
hyphy	academic/hyphy: Updated for version 2.5.50.	2023-05-13 19:27:12 +07:00
IGV	academic/IGV: Updated for version 2.16.2.	2023-09-17 00:10:15 +07:00
io_lib	academic/io_lib: Updated for version 1.15.0.	2023-05-13 19:27:04 +07:00
iqtree	academic/iqtree: Updated for version 2.2.2.7.	2023-09-13 21:53:07 +07:00
irsim
Isabelle	academic/Isabelle: Added (proof assistant).	2023-07-18 08:47:19 +07:00
isoelectric-point	academic/isoelectric-point: Change i486 to i586	2022-06-07 02:23:04 -04:00
iTest	academic/iTest: Use qt4.	2022-02-27 22:29:06 -06:00
itex2mml
ITK
jalview	academic/jalview: Updated for version 2.11.2.7.	2023-09-17 00:10:16 +07:00
jellyfish_k-mer	academic/jellyfish_k-mer: Remove .la files.	2022-03-08 09:44:28 +07:00
jpicedt	academic/jpicedt: Change i486 to i586	2022-06-07 02:23:04 -04:00
jugglinglab	various: Use zulu jdk builds for REQUIRES.	2022-03-03 15:56:51 +07:00
kalign	academic/kalign: Added (multipelsquence alignment program).	2023-09-11 14:39:00 +07:00
karma	academic/karma: Allow ARCH=i586 in environment.	2022-03-20 20:45:13 +07:00
klavaro	academic/klavaro: Updated for version 3.14.	2022-12-31 09:14:42 +07:00
klu	academic/klu: Align with template.	2023-05-20 11:17:29 +07:00
knime
kraken
Kst	academic/Kst: Updated for version 20221025_5fdd819.	2023-02-22 12:09:51 +07:00
ktikz
kurso	academic/kurso: x86 is unsupported.	2022-03-12 11:30:45 +13:00
labplot2	academic/labplot2: Fix double compilation.	2023-08-19 09:15:16 +07:00
ladr	academic/ladr: Wrap README at 72 columns.	2022-03-12 14:35:24 -05:00
laghos	academic/laghos: Added (LAGrangian High-Order Solver)	2022-12-17 09:13:53 +07:00
lalnview
lammps	academic/lammps: Added (molecular simulator).	2023-09-03 09:37:13 +07:00
lapack95
lapacke	academic/lapacke: Align with template.	2023-05-20 11:17:30 +07:00
latex2html
ldl	academic/ldl: Align with template.	2023-05-20 11:17:30 +07:00
libghemical	academic/libghemical: Change i486 to i586	2022-06-07 02:23:04 -04:00
link-grammar	academic/link-grammar: Change i486 to i586	2022-06-07 02:23:04 -04:00
locarna	academic/locarna: Remove .la files.	2022-03-08 09:44:28 +07:00
lpsolve
mafft	academic/mafft: Updated for version 7.520.	2023-05-13 19:27:12 +07:00
magic
mathics	academic/mathics: Fix deps.	2022-11-12 22:33:12 +07:00
mathjax2	academic/mathjax2: Update maintainer's email	2023-06-04 23:13:23 +07:00
mathomatic	academic/mathomatic: Change i486 to i586	2022-06-07 02:23:04 -04:00
matio	academic/matio: Updated for version 1.5.23.	2023-02-11 09:30:46 +07:00
maxima	academic/maxima: Updated for version 5.47.0.	2023-07-02 21:01:11 +07:00
meep	academic/meep: Fix 32bit build.	2023-07-22 15:52:46 +07:00
megax	academic/megax: Fix and mv ARCH sect.	2023-05-20 11:17:56 +07:00
meme-db-gomo
meme-db-motif	academic/meme-db-motif: Updated for version 12.23.	2022-09-04 04:57:25 +01:00
meme-db-tgene
meme-suite	academic/meme-suite: Updated for version 5.5.4.	2023-09-13 21:51:25 +07:00
mendeleydesktop	academic/mendeleydesktop: Fix ARCH.	2023-06-03 10:38:30 +07:00
metalwalls	academic/metalwalls: Added (Molecular modelling systems).	2022-10-19 01:02:36 +07:00
MetaPhlAn2	academic/MetaPhlAn2: Fix ARCH and deps.	2022-11-12 22:33:20 +07:00
metis	academic/metis: Align with template.	2023-05-20 11:17:30 +07:00
mfem	academic/mfem: Added (library for finite element methods).	2022-11-20 09:37:41 +07:00
minorminer	academic/minorminer: Added (heuristic tool for minor embedding).	2022-11-12 10:48:01 +07:00
mkDSSP	academic/mkDSSP: Updated for version 4.0.3, switch to cmake.	2022-02-07 23:04:38 +07:00
molequeue	academic/molequeue: Updated for version 0.9.0.	2022-04-24 01:47:09 +07:00
mpb	academic/mpb: Remove .la files.	2022-03-08 09:44:29 +07:00
mrbayes
mumsa	academic/mumsa: Added (A tool to assess MSA quality)	2022-09-25 13:59:42 +07:00
muscle
muscle5	academic/muscle5: Added (MUSCLE 5: Next-generation MUSCLE)	2022-10-15 10:47:28 +07:00
ncbi-blast	academic/ncbi-blast: Fix and mv ARCH sect.	2023-05-20 11:17:56 +07:00
ncbi-blast+	academic/ncbi-blast+: Updated for version 2.14.1.	2023-09-13 21:52:06 +07:00
ncbi-edirect	academic/ncbi-edirect: Updated for version 20.5.20231007.	2023-10-14 10:32:26 +07:00
ncbi-rmblastn	academic/ncbi-rmblastn: Allow ARCH=i586 in environment.	2022-03-20 20:45:13 +07:00
nco	academic/nco: Updated for version 5.1.8.	2023-09-23 08:42:58 +07:00
ncview
ngspice	academic/ngspice: Updated for version 41.	2023-08-19 09:15:20 +07:00
novocraft
NWChem	academic/NWChem: Added (High-Performance Computational Chemistry)	2022-12-10 07:43:12 +07:00
octave	academic/octave: Updated for version 8.3.0	2023-08-19 09:15:33 +07:00
openboard	academic/openboard: Fix build with newer ffmpeg.	2022-10-13 10:19:15 +07:00
OpenFOAM	academic/OpenFOAM: Updated for version 10.	2022-07-29 22:50:17 +07:00
OpenMM	academic/OpenMM: Fix github tarball handling.	2022-11-05 21:15:16 +07:00
OpenVSP	academic/OpenVSP: Moved from graphics. Updated for version 3.31.1.	2023-01-21 10:22:03 +07:00
pal2nal
paml	academic/paml: Updated for version 4.10.6.	2023-04-22 11:38:27 +07:00
pamlX	academic/pamlX: Fix paml docs dir.	2023-04-22 11:38:28 +07:00
papi	academic/papi: Updated for version 6.0.0.1.	2022-02-27 22:29:06 -06:00
pari
parmetis	academic/parmetis: Change i486 to i586	2022-06-07 02:23:04 -04:00
patsy	academic/patsy: Fix deps.	2022-11-12 22:33:12 +07:00
pcalc
pcb
penaltymodel	academic/penaltymodel: Added (penalty model solver).	2022-11-12 10:49:57 +07:00
perlprimer
petsc	academic/petsc: Fix deps.	2022-11-12 22:33:16 +07:00
PhyML	academic/PhyML: Updated for version 3.3.20220408.	2022-09-04 13:49:57 +01:00
pianobooster	academic/pianobooster: Update email address.	2022-06-08 12:25:51 -04:00
plasmidomics
plus42	academic/plus42: Updated for version 1.0.21.	2023-08-26 19:07:00 +07:00
pomoxis	academic/pomoxis: Added (bioinformatics tools for nanopore research)	2023-03-18 09:50:22 +07:00
prank-msa	academic/prank-msa: Added (probabilistic multiple alignment program)	2022-09-08 22:18:25 +01:00
primer3	academic/primer3: Updated for version 2.6.1.	2023-06-20 19:52:38 +07:00
pspp	academic/pspp: Updated for version 1.6.2.	2023-03-04 07:16:37 +07:00
pulseview	academic/pulseview: Updated for version 20220225_4efbe9b.	2022-02-27 22:29:06 -06:00
PyAMG	academic/PyAMG: Fix deps.	2022-11-12 22:33:11 +07:00
pyCRAC	academic/pyCRAC: Updated to version 1.5.2; crac_pipeline no longer included (see README)	2023-04-15 06:41:28 +07:00
pyfits	academic/pyfits: Align with template.	2023-05-20 11:17:27 +07:00
pysam	academic/pysam: set to use internal htslib	2023-09-23 08:31:12 +07:00
python2-kiwisolver	academic/python2-kiwisolver: Align with template.	2023-05-20 11:17:41 +07:00
python2-scipy	academic/python2-scipy: Align with template.	2023-05-20 11:17:41 +07:00
python3-ase	academic/python3-ase: Added (Atomic Simulation Environment (ASE))	2022-12-10 07:43:12 +07:00
python3-scipy	academic/python3-scipy: Fix dep.	2023-10-20 15:43:06 +07:00
qalculate-gtk
qcl
qhull
qrupdate	academic/qrupdate: Align with template.	2023-05-20 11:17:30 +07:00
qucs	academic/qucs: Align to template.	2022-03-26 11:46:45 +13:00
qucs-s	academic/qucs-s: Updated for version 2.0.0.	2023-09-02 18:02:34 +07:00
R	academic/R: Updated for version 4.3.1.	2023-07-02 23:21:19 +07:00
ramulator	academic/ramulator: Fix github tarball handling.	2022-11-26 09:11:46 +07:00
RAxML
rbio	academic/rbio: Align with template.	2023-05-20 11:17:27 +07:00
reduce-algebra
RepeatMasker	academic/RepeatMasker: Updated for version 4.1.5.	2023-09-17 00:10:17 +07:00
root	academic/root: do not download and use gtest	2023-04-05 14:52:11 +07:00
rpy2	academic/rpy2: Upgrade to version 3.5.14	2023-09-23 08:31:12 +07:00
sage	academic/sage: Updated for 10.1	2023-09-29 10:35:53 +07:00
sage-bin	academic/sage-bin: Fix .info.	2022-05-28 09:11:22 +07:00
samtools	academic/samtools: Upgrade to version 1.18	2023-09-23 08:31:12 +07:00
samtools-legacy
scidavis	academic/scidavis: Updated for version 2.9.0.	2022-06-18 09:09:57 +07:00
scilab	various: Use zulu jdk builds for REQUIRES.	2022-03-03 15:56:51 +07:00
seaview	academic/seaview: treerecs added to REQUIRES.	2023-04-22 11:38:31 +07:00
seqkit	academic/seqkit: Updated for version 2.5.1.	2023-09-23 08:42:56 +07:00
SeqMonk	academic/SeqMonk: Updated for version 1.48.1.	2022-08-06 20:16:13 +07:00
sequence-analysis	academic/sequence-analysis: Use zulu-openjdk11.	2022-03-03 15:56:49 +07:00
Shark
sigrok-cli	academic/sigrok-cli: Updated for version 20220222_525f481.	2022-03-01 19:35:46 +07:00
sim	academic/sim: Added (local similarity program).	2023-09-11 22:18:38 +07:00
SimEng	academic/SimEng: Fix github tarball handling.	2022-11-26 09:11:46 +07:00
siril	academic/siril: Fix VERSION.	2022-03-12 11:36:35 +13:00
smath-studio	academic/smath-studio: Updated for version 1.0.8348	2022-12-03 11:46:53 +07:00
snpEff	academic/snpEff: Build cleanup.	2022-08-13 10:40:38 +07:00
solfege	academic/solfege: Change i486 to i586	2022-06-07 02:23:04 -04:00
spades	academic/spades: Updated for version 3.15.5.	2023-04-21 09:30:46 +07:00
speedcrunch
spiceopus	academic/spiceopus: Change i486 to i586	2022-06-07 02:23:05 -04:00
spidey	academic/spidey: Fix and mv ARCH sect.	2023-05-20 11:17:56 +07:00
spqr	academic/spqr: Align with template.	2023-05-20 11:17:30 +07:00
squizz	academic/squizz: Remove .la files.	2022-03-08 09:44:29 +07:00
staden	academic/staden: A few enhancements.	2023-05-13 19:27:12 +07:00
STAR	academic/STAR:Upgrade to version 2.7.11a	2023-09-23 08:31:13 +07:00
stellarium	academic/stellarium: Updated for version 23.1.	2023-05-06 08:28:22 +07:00
stellarsolver	academic/stellarsolver: Added (Astrometric Plate Solver)	2022-08-20 10:06:38 +07:00
stringtie
SU2	academic/SU2: Add network warning to README.	2023-09-23 11:33:27 +07:00
suitesparse	academic/suitesparse: Updated for version 5.13.0	2023-07-02 23:21:23 +07:00
suitesparseconfig	academic/suitesparseconfig: Align with template.	2023-05-20 11:17:30 +07:00
sundials
sword	academic/sword: Updated for version 1.9.0.	2022-04-16 12:12:42 +07:00
sword-data-kjv	academic/sword-data-kjv: Updated for version 1.9.0_2.	2023-07-29 08:13:30 +07:00
t_coffee	academic/t_coffee: Updated for version 13.45.58.c355d11.	2022-03-01 19:35:46 +07:00
tabix-legacy
tiemu	academic/tiemu: New maintainer.	2023-02-25 09:18:10 +07:00
tilem	academic/tilem: Fix for gcc >= 10.x.	2022-03-01 19:35:46 +07:00
tilem2
tkgate	academic/tkgate: Change i486 to i586	2022-06-07 02:23:05 -04:00
topdraw	academic/topdraw: update source.	2023-09-11 22:18:50 +07:00
tophat	academic/tophat: Use -std=c++14.	2022-03-03 09:38:11 +00:00
treebest-ensembl	academic/treebest-ensembl: Wrap README at 72 columns.	2022-03-12 14:40:15 -05:00
TreeGraph	academic/TreeGraph: Use zulu-openjdk11.	2022-03-03 15:56:48 +07:00
treerecs	academic/treerecs: Added (Treerecs: a tree reconciliation tool)	2023-04-22 11:38:30 +07:00
treeviewx	academic/treeviewx: update source.	2023-09-11 22:18:50 +07:00
trfind
trimmomatic	academic/trimmomatic: Use zulu-openjdk11.	2022-03-03 15:56:49 +07:00
tuxmath	academic/tuxmath: Rename blits. Remove dupe lan player.	2022-03-04 09:46:12 +00:00
tuxtype2	academic/tuxtype2: Change i486 to i586	2022-06-07 02:23:05 -04:00
ucsc-blat	academic/ucsc-blat: Fix and mv ARCH sect, http->https.	2023-05-20 11:17:56 +07:00
ugene	academic/ugene: Updated for version 48.1.	2023-09-17 00:10:15 +07:00
umfpack	academic/umfpack: Align with template.	2023-05-20 11:17:31 +07:00
units	academic/units: Fix paths and run install-info	2023-08-05 10:08:41 +07:00
vCAPS_coevolution	academic/vCAPS_coevolution: Added (Coevolution Analysis)	2022-09-09 03:10:09 +01:00
vcftools
velocyto	academic/velocyto: Use correct github URL.	2023-03-25 10:02:01 +07:00
verilator	academic/verilator: Make slack-desc ASCII.	2022-03-17 12:38:15 -04:00
verilog	academic/verilog: Fix download url.	2022-11-05 12:56:05 +07:00
veusz	academic/veusz: Fix deps.	2022-11-12 22:33:18 +07:00
ViennaRNA	academic/ViennaRNA: upgrade to version 2.6.4; edit README	2023-10-10 06:34:40 +07:00
voro++	academic/voro++: Added (A 3D Voronoi cell software library)	2022-10-15 10:47:38 +07:00
wehi-cellsymphony	academic/wehi-cellsymphony: Use zulu-openjdk11.	2022-03-03 15:56:49 +07:00
wehi-deid	academic/wehi-deid: Use zulu-openjdk11.	2022-03-03 15:56:49 +07:00
wehi-hackit	academic/wehi-hackit: Use zulu-openjdk11.	2022-03-03 15:56:49 +07:00
wehi-weasel	academic/wehi-weasel: Updated for version 3.8.0.18.	2023-09-17 00:10:15 +07:00
WEVOTE
wise	academic/wise: Update script.	2023-09-23 08:42:56 +07:00
wmcalc	academic/wmcalc: Fix doinst.sh.	2022-12-31 09:14:48 +07:00
WolframEngine	academic/WolframEngine: Updated for version 13.3.0.	2023-09-09 10:14:14 +07:00
WordNet	academic/WordNet: Change i486 to i586	2022-06-07 02:23:02 -04:00
wxMaxima	academic/wxMaxima: Use DESTDIR properly.	2023-07-08 16:41:57 +07:00
x48	academic/x48: Added (HP48 Calculator emulator)	2022-04-30 13:51:49 +07:00
xcircuit	academic/xcircuit: Updated for version 3.10.30. New maintainer.	2023-03-25 10:01:45 +07:00
xephem	academic/xephem: Updated for version 4.1.0.	2023-08-12 09:42:58 +09:00
xflr5	academic/xflr5: Updated for version 6.54.	2022-04-16 12:12:52 +07:00
xfoil
xiphos	academic/xiphos: Update DEP.	2023-02-25 08:54:00 +07:00
xoscope	academic/xoscope: Align with template.	2023-05-20 11:17:31 +07:00
xsimd	academic/xsimd: Correct email and clean up SlackBuild	2023-09-23 10:59:55 +07:00
yices2	academic/yices2: Added (Satisfiability modulo theories solver).	2022-11-05 12:46:15 +07:00
z3	academic/z3: Updated for version 4.11.2.	2022-10-08 09:12:54 +07:00
ZeGrapher
zotero	academic/zotero: Updated for version 6.0.26.	2023-05-06 08:28:18 +07:00
zotero-gtk2	academic/zotero-gtk2: Added (Collect and share research sources)	2023-05-06 08:28:23 +07:00