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academic/PhyML: Updated for version 3.3.20220408.

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Signed-off-by: Dave Woodfall <dave@slackbuilds.org>
This commit is contained in:
Petar Petrov 2022-09-04 13:49:57 +01:00 committed by Dave Woodfall
parent 895cf023f7
commit 08e0e1dd1b
2 changed files with 38 additions and 34 deletions
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66
academic/PhyML/PhyML.SlackBuild
View file

@ -2,7 +2,7 @@
# Slackware build script for PhyML
# Copyright 2011-2021 Petar Petrov slackalaxy@gmail.com
# Copyright 2011-2022 Petar Petrov slackalaxy@gmail.com
# All rights reserved.
#
# Redistribution and use of this script, with or without modification, is
@ -27,7 +27,7 @@
cd $(dirname $0) ; CWD=$(pwd)
PRGNAM=PhyML
VERSION=${VERSION:-3.3.20200621}
VERSION=${VERSION:-3.3.20220408}
BUILD=${BUILD:-1}
TAG=${TAG:-_SBo}
PKGTYPE=${PKGTYPE:-tgz}
@ -123,45 +123,49 @@ sed -i "/^CFLAGS/s/=/+=/" Makefile src/Makefile
CFLAGS="$SLKCFLAGS -mfma" CXXFLAGS="$SLKCFLAGS -mfma" make
make install DESTDIR=$PKG
# This is Phyrex
./autogen.sh
./configure \
--prefix=/usr \
--libdir=/usr/lib${LIBDIRSUFFIX} \
--sysconfdir=/etc \
--localstatedir=/var \
--mandir=/usr/man \
--enable-phyrex \
--docdir=/usr/doc/$PRGNAM-$VERSION \
--build=$ARCH-slackware-linux
# This is Phyrex but it breaks at the moment
./autogen.sh
./configure \
--prefix=/usr \
--libdir=/usr/lib${LIBDIRSUFFIX} \
--sysconfdir=/etc \
--localstatedir=/var \
--mandir=/usr/man \
--enable-phyrex \
--docdir=/usr/doc/$PRGNAM-$VERSION \
--build=$ARCH-slackware-linux
# Use our CFLAGS
# Use our CFLAGS
sed -i "/^CFLAGS/s/=/+=/" Makefile src/Makefile
CFLAGS="$SLKCFLAGS -mfma" CXXFLAGS="$SLKCFLAGS -mfma" make
make install DESTDIR=$PKG
# This is PhyTime
./autogen.sh
./configure \
--prefix=/usr \
--libdir=/usr/lib${LIBDIRSUFFIX} \
--sysconfdir=/etc \
--localstatedir=/var \
--mandir=/usr/man \
--enable-phytime \
--docdir=/usr/doc/$PRGNAM-$VERSION \
--build=$ARCH-slackware-linux
# Use our CFLAGS
sed -i "/^CFLAGS/s/=/+=/" Makefile src/Makefile
CFLAGS="$SLKCFLAGS -mfma" CXXFLAGS="$SLKCFLAGS -mfma" make
make install DESTDIR=$PKG
# # This is PhyTime
# ./autogen.sh
# ./configure \
# --prefix=/usr \
# --libdir=/usr/lib${LIBDIRSUFFIX} \
# --sysconfdir=/etc \
# --localstatedir=/var \
# --mandir=/usr/man \
# --enable-phytime \
# --docdir=/usr/doc/$PRGNAM-$VERSION \
# --build=$ARCH-slackware-linux
#
# # Use our CFLAGS
# sed -i "/^CFLAGS/s/=/+=/" Makefile src/Makefile
#
# CFLAGS="$SLKCFLAGS -mfma" CXXFLAGS="$SLKCFLAGS -mfma" make
# make install DESTDIR=$PKG
find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | grep ELF \
| cut -f 1 -d : | xargs strip --strip-unneeded 2> /dev/null || true
# fix permissions for docs
chmod 0644 doc/*.{pdf,tex,bib}
chmod 0644 doc/fig/*.pdf
# Include some examples
mkdir -p $PKG/usr/share/$PRGNAM
cp -a examples $PKG/usr/share/$PRGNAM

6
academic/PhyML/PhyML.info
View file

@ -1,8 +1,8 @@
PRGNAM="PhyML"
VERSION="3.3.20200621"
VERSION="3.3.20220408"
HOMEPAGE="https://github.com/stephaneguindon/phyml/"
DOWNLOAD="https://github.com/stephaneguindon/phyml/archive/v3.3.20200621/phyml-3.3.20200621.tar.gz"
MD5SUM="12622e111c388bcb16696660033143b5"
DOWNLOAD="https://github.com/stephaneguindon/phyml/archive/v3.3.20220408/phyml-3.3.20220408.tar.gz"
MD5SUM="b35e641af77d7f058cf1ddc73be5e0b7"
DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
REQUIRES="openmpi"