Benjamin Trigona-Harany 3ed6b53354 academic/cld2: Fix build on current. ... Signed-off-by: Benjamin Trigona-Harany <bosth@alumni.sfu.ca>		2018-03-17 08:51:42 +07:00
..
abntex
aenig4
aline
aliview	academic/aliview: Added (Alignment viewer and editor).	2018-02-17 07:42:47 +07:00
amd	academic/amd: BUILD bump for SuiteSparse 5.1.0.	2017-12-21 08:19:40 +07:00
amplicon
amplifx
antiprism
archaeopteryx	academic/archaeopteryx: Updated for version 0.9920b.	2017-10-11 06:19:45 +07:00
aris
arka
armadillo	academic/armadillo: Updated for version 8.100.0.	2017-10-07 00:34:52 +01:00
arpack
arpack-ng	academic/arpack-ng: Updated for version 3.5.0.	2017-05-27 07:29:10 +07:00
artha	academic/artha: Mirror download url.	2018-03-06 02:04:16 +07:00
avl
avogadro	academic/avogadro: Mirror download url.	2018-03-10 07:11:14 +07:00
bedGraphToBigWig
bedtools	academic/bedtools: Updated for version 2.27.1.	2018-01-13 07:13:04 +07:00
biblesync
bibletime	academic/bibletime: Updated for version 2.11.1.	2017-10-04 10:57:52 +01:00
bibus
bowtie
bowtie2
bpp-core	academic/bpp-core: Updated for version 2.3.1.	2017-10-11 06:19:46 +07:00
bpp-phyl	academic/bpp-phyl: Updated for version 2.3.1.	2017-10-11 06:19:46 +07:00
bpp-phyl-omics	academic/bpp-phyl-omics: Updated for version 2.3.1.	2017-10-11 06:19:47 +07:00
bpp-popgen	academic/bpp-popgen: Updated for version 2.3.1.	2017-10-11 06:19:47 +07:00
bpp-seq	academic/bpp-seq: Updated for version 2.3.1.	2017-10-11 06:19:46 +07:00
bpp-seq-omics	academic/bpp-seq-omics: Updated for version 2.3.1.	2017-10-11 06:19:46 +07:00
bppsuite	academic/bppsuite: Updated for version 2.3.1.	2017-10-11 06:19:47 +07:00
btf	academic/btf: BUILD bump for SuiteSparse 5.1.0.	2017-12-21 08:19:40 +07:00
bwa	academic/bwa: Updated for version 0.7.17.	2018-01-13 07:13:04 +07:00
cadabra2	academic/cadabra2: Updated for version 2.1.7.	2017-12-02 06:31:04 +07:00
CAFS_divergence
calc	academic/calc: Fix download url.	2018-03-03 08:42:14 +07:00
calcoo	academic/calcoo: Fix ownership.	2017-07-15 07:27:22 +07:00
camd	academic/camd: BUILD bump for SuiteSparse 5.1.0.	2017-12-21 08:19:40 +07:00
cap3
CAPS_coevolution
cblas	academic/cblas: Updated for version 3.8.0.	2017-12-21 08:19:39 +07:00
ccolamd	academic/ccolamd: BUILD bump for SuiteSparse 5.1.0.	2017-12-21 08:19:40 +07:00
celestia
chemtool
cholmod	academic/cholmod: BUILD bump for SuiteSparse 5.1.0.	2017-12-21 08:19:40 +07:00
cistrome-CEAS
cistrome-conductGO	academic/cistrome-conductGO: Fix ownership.	2017-07-15 07:28:59 +07:00
cistrome-extra	academic/cistrome-extra: Updated for version git_20170829_6334683.	2017-10-11 06:19:48 +07:00
cistrome-MACS
cistrome-mdseqpos	academic/cistrome-mdseqpos: Updated for v. git_20170829_6334683.	2017-10-11 06:19:48 +07:00
cld2	academic/cld2: Fix build on current.	2018-03-17 08:51:42 +07:00
clustalo
clustalw
clustalx
colamd	academic/colamd: BUILD bump for SuiteSparse 5.1.0.	2017-12-21 08:19:40 +07:00
convertall
copasi	academic/copasi: Updated for version 4.22.170.	2017-11-17 01:25:54 +07:00
coq
csparse	academic/csparse: Updated for version 3.2.0.	2017-12-21 08:19:40 +07:00
cufflinks
cutadapt	academic/cutadapt: Updated for version 1.14.	2017-10-11 06:19:48 +07:00
cxsparse	academic/cxsparse: Updated for version 3.2.0.	2017-12-21 08:19:40 +07:00
dakota	academic/dakota: Updated for version 6.7.	2017-12-16 07:32:03 +07:00
Data2FCS
drawtiming
ds9	academic/ds9: Added (Astronomical tool).	2017-06-30 13:58:28 +07:00
easy_spice	academic/easy_spice: Use tgz.	2017-08-26 07:20:03 +07:00
edsim51di	academic/edsim51di: Updated for version 2.1.20.	2017-06-28 11:35:31 +07:00
EMBASSY
EMBOSS
engauge	academic/engauge: Fixed build with openjpeg-2.3.0.	2018-02-18 10:35:26 +00:00
ent
equalx
ess	academic/ess: Fix DOWNLOAD.	2017-06-25 07:32:20 +07:00
evopedia_qt
exonerate	academic/exonerate: Switch to https.	2017-10-26 09:25:14 +07:00
extrema
fann
fastqc
FCSalyzer	academic/FCSalyzer: Updated for version 0.9.14_alpha.	2017-10-11 06:19:32 +07:00
fet	academic/fet: Updated for version 5.35.2.	2018-02-10 08:09:31 +07:00
finchtv	academic/finchtv: Updated for version 1.3.1.	2017-10-11 06:19:49 +07:00
fityk
flann
flashqard
flexbar	academic/flexbar: Added (barcode and adapter removal).	2017-09-16 07:15:01 +07:00
free42	academic/free42: Updated for version 2.0.4.	2017-07-29 17:50:21 +07:00
freechartgeany
g3data
galculator	academic/galculator: Fix download url.	2018-03-06 01:27:35 +07:00
gaw3	academic/gaw3: Updated for version 20170716.	2017-12-02 06:30:53 +07:00
Gblocks	academic/Gblocks: Fix download url.	2018-03-03 08:42:14 +07:00
gcalctool
gchemutils
gcompris	academic/gcompris: Updated for version 17.05.	2017-12-27 18:10:01 -06:00
geda-gaf
gelemental
geneconv	academic/geneconv: Switch to https.	2017-12-13 16:05:14 +07:00
genius	academic/genius: Updated for version 1.0.23.	2018-02-17 07:42:45 +07:00
genometools
genpak
GeoGebra	academic/GeoGebra: Updated for version 5.0.361.0.	2017-05-28 20:59:44 +01:00
geomview
gerbv
ggobi
ghemical
glpk
gnucap
gp2fasta	academic/gp2fasta: Update HOMEPAGE and DOWNLOAD urls.	2017-08-12 06:58:19 +07:00
gpredict
grace
gresistor
gretl	academic/gretl: Updated for version 2017c.	2017-07-29 17:50:22 +07:00
grpn
gspiceui	academic/gspiceui: Updated for version 1.1.00.	2017-09-02 10:19:45 +01:00
gtkwave
gtypist
gwyddion	academic/gwyddion: Updated for version 2.50.	2018-02-10 08:09:29 +07:00
HMMER
hyphy	academic/hyphy: Updated for version 2.3.8.	2018-01-13 07:13:04 +07:00
ij-plugins-LOCI
ij-plugins-UCSD
ImageJ
io_lib
irsim
isoelectric-point
iTest
itex2mml	academic/itex2mml: Remove obsolete patch.	2017-11-04 07:17:46 +07:00
jalview
jpicedt
jugglinglab
karma	academic/karma: Fix library issue.	2017-06-24 08:32:16 +07:00
kile
klavaro
klu	academic/klu: BUILD bump for SuiteSparse 5.1.0.	2017-12-21 08:19:40 +07:00
knime	academic/knime: Fix ownership.	2017-07-15 07:27:43 +07:00
Kst
ktikz
kurso
labplot2
ladr
lalnview
lapack95
lapacke	academic/lapacke: Updated for version 3.8.0.	2017-12-21 08:19:39 +07:00
ldl	academic/ldl: BUILD bump for SuiteSparse 5.1.0.	2017-12-21 08:19:40 +07:00
libghemical
libqalculate	academic/libqalculate: Updated for version 2.2.0	2018-01-17 19:46:27 +07:00
link-grammar
loggerpro
lpsolve
mafft	academic/mafft: Updated for version 7.313.	2018-01-13 07:13:04 +07:00
magic
mathics
mathomatic
matio
maxima
megacc	academic/megacc: Updated for version 7.0.26_1.	2017-10-11 06:19:49 +07:00
meme-suite	academic/meme-suite: Added (Motif based sequence analysis tools).	2017-10-11 06:19:52 +07:00
mendeleydesktop	academic/mendeleydesktop: Updated homepage link.	2017-05-20 06:55:02 +07:00
metis
mkDSSP
Mnemosyne	academic/Mnemosyne: Fix whitespaces.	2017-10-07 07:01:53 +07:00
mpmath	academic/mpmath: Switch to i586.	2017-06-21 08:51:22 +01:00
mrbayes
muscle
ncbi-blast	academic/ncbi-blast: Updated downloar urls.	2018-03-02 08:15:00 +07:00
ncbi-blast-plus	academic/ncbi-blast-plus: Updated for version 2.7.1.	2018-01-13 07:13:04 +07:00
ncbi-rmblastn	academic/ncbi-rmblastn: Added (NCBI RMBlast).	2018-01-13 07:13:04 +07:00
ngspice	academic/ngspice: Fixed md5sums.	2017-12-16 07:32:03 +07:00
novocraft	academic/novocraft: Updated for version 3.08.02.	2018-01-27 07:43:47 +07:00
octave
OpenFOAM	academic/OpenFOAM: Fix build.	2017-09-30 00:42:08 +01:00
pal2nal	academic/pal2nal: Updated for version 14.1.	2018-01-13 07:13:04 +07:00
paml	academic/paml: Mirror download url.	2018-03-06 02:04:16 +07:00
pamlX	academic/pamlX: Updated for paml-4.9g compatibility.	2018-01-13 07:13:04 +07:00
papi	academic/papi: Fixed ownership.	2018-03-10 07:11:02 +07:00
parmetis
patsy
pcb	academic/pcb: Updated for version 4.0.2.	2018-01-10 23:55:51 +07:00
perlprimer
PhyML	academic/PhyML: Fix download url.	2018-03-03 08:42:14 +07:00
pianobooster
plasmidomics
prank-msa	academic/prank-msa: Updated for version 170427.	2017-10-11 06:19:49 +07:00
primer3
pspp
pulseview	academic/pulseview: Switch to https.	2017-08-26 09:29:14 +07:00
PyAMG	academic/PyAMG: Update HOMEPAGE.	2017-06-06 07:56:33 +07:00
pyCRAC	academic/pyCRAC: Updated for version 1.2.4.0.	2017-11-20 17:59:07 +07:00
pyfits	academic/pyfits: Update download url.	2018-03-02 08:16:03 +07:00
pysam	academic/pysam: Updated for version 0.13.0.	2018-01-27 07:43:46 +07:00
qalculate-gtk	academic/qalculate-gtk: Updated for version 2.2.0	2018-01-17 19:46:27 +07:00
qcl	academic/qcl: Added (A Programming Language for Quantum Computers).	2018-02-17 07:42:46 +07:00
qhull	academic/qhull: Updated for version 2015.2.	2017-06-30 13:05:01 +07:00
qrupdate
QtiPlot
qtoctave	academic/qtoctave: Mirror download url.	2018-03-06 02:04:16 +07:00
qucs
R	academic/R: Updated for version 3.4.3.	2018-01-06 06:55:32 +07:00
rbio	academic/rbio: BUILD bump for SuiteSparse 5.1.0.	2017-12-21 08:19:40 +07:00
reduce-algebra	academic/reduce-algebra: Updated for version 20180117svn4372.	2018-01-19 22:51:55 +00:00
RepeatMasker	academic/RepeatMasker: Added (Screen DNA sequence).	2018-01-13 07:13:05 +07:00
root
sage	academic/sage: New maintainer.	2017-08-12 06:57:31 +07:00
samtools
scidavis	academic/scidavis: Patched to fix crashes.	2017-12-02 06:31:04 +07:00
scilab	academic/scilab: Updated for version 6.0.0 + new maintainer.	2017-08-12 06:57:30 +07:00
scipy	academic/scipy: Update HOMEPAGE.	2017-05-27 07:29:45 +07:00
scipy3	academic/scipy3: Update HOMEPAGE.	2017-05-27 07:29:46 +07:00
seaview	academic/seaview: Updated for version 4.6.3.	2018-01-13 07:13:05 +07:00
sequence-analysis
sigrok-cli	academic/sigrok-cli: Switch to https.	2017-08-26 09:30:34 +07:00
siril	academic/siril: Fix doc ownership, use our cflags.	2017-07-12 16:39:17 +01:00
slatec
smath-studio	academic/smath-studio: Fix download urls.	2018-03-03 08:42:14 +07:00
snpEff	academic/snpEff: Updated for version 4.3t.	2018-01-13 07:13:05 +07:00
solfege	academic/solfege: Update HOMEPAGE and DOWNLOAD urls.	2017-06-03 07:59:40 +07:00
spades	academic/spades: Updated for version 3.11.1.	2017-10-11 06:19:50 +07:00
speedcrunch	academic/speedcrunch: Fixed tarball handling.	2018-01-21 11:35:28 +00:00
spiceopus
spidey	academic/spidey: Update HOMEPAGE.	2017-05-27 07:29:56 +07:00
spqr	academic/spqr: BUILD bump for SuiteSparse 5.1.0.	2017-12-21 08:19:41 +07:00
squizz
staden
stellarium	academic/stellarium: Updated for version 0.16.0.	2017-08-26 07:19:30 +07:00
suitesparse	academic/suitesparse: Updated for version 5.1.2	2018-01-10 23:55:45 +07:00
suitesparseconfig	academic/suitesparseconfig: Updated for version 5.1.0.	2017-12-21 08:19:39 +07:00
sundials	academic/sundials: Update HOMEPAGE and DOWNLOAD urls.	2017-05-27 07:29:59 +07:00
sword	academic/sword: Updated for version 1.8.1.	2018-01-17 19:46:31 +07:00
sword-data-kjv	academic/sword-data-kjv: Updated for version 1.8.1.	2018-01-17 19:46:31 +07:00
sympy
t_coffee
tabix
tilem
tilem2	academic/tilem2: Fix ownership.	2017-07-15 07:28:25 +07:00
tkgate	academic/tkgate: Mirror download url.	2018-03-10 07:11:14 +07:00
topdraw
tophat	academic/tophat: Force a single make job.	2017-07-29 17:50:23 +07:00
treeview	academic/treeview: Updated for version 0.5.1.	2017-08-13 09:00:13 +07:00
trfind	academic/trfind: Fix executable for use with RepeatMasker.	2018-01-17 19:46:30 +07:00
tuxmath
tuxtype2
ucsc-blat	academic/ucsc-blat: Update HOMEPAGE.	2017-05-27 07:30:10 +07:00
ugene	academic/ugene: Updated for version 1.29.0.	2018-01-13 07:13:05 +07:00
umfpack	academic/umfpack: BUILD bump for SuiteSparse 5.1.0.	2017-12-21 08:19:41 +07:00
units	academic/units: Updated for version 2.16.	2018-01-06 06:41:44 +07:00
vcftools	academic/vcftools: Updated for version 0.1.15.	2017-10-11 06:19:50 +07:00
verilog
veusz	academic/veusz: Updated for version 2.2.	2018-03-03 08:42:06 +07:00
wehi-cellsymphony
wehi-deid
wehi-hackit
wehi-weasel	academic/wehi-weasel: Updated for version 3.4.2.17.	2017-10-11 06:19:51 +07:00
wmcalc
WordNet
wxmacmolplt
wxMaxima
xcircuit
xephem
xflr5	academic/xflr5: Fix slack-desc, add doinst.sh.	2018-03-10 07:11:01 +07:00
xfoil
xiphos	academic/xiphos: Updated for version 4.0.7.	2017-10-21 06:58:09 +07:00
xoscope
Xyce
ZeGrapher	academic/ZeGrapher: Added (math graphing).	2018-01-19 11:45:00 +00:00
zotero	academic/zotero: Updated for version 5.0.33.	2018-01-13 07:13:05 +07:00