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academic/pysam: Updated for version 0.13.0.

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Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
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Rob van Nues 2018-01-21 08:55:13 +07:00 committed by Willy Sudiarto Raharjo
parent a232cb8784
commit faca3e09ed
4 changed files with 16 additions and 13 deletions
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8
academic/pysam/README
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@ -1,7 +1,11 @@
Pysam is a python module for reading and manipulating files in the
SAM/BAM format. The SAM/BAM format is a way to store efficiently large
numbers of alignments (`Li 2009`_), such as those routinely created by
numbers of alignments (Li 2009), such as those routinely created by
next-generation sequencing methods.
Pysam is a lightweight wrapper of the samtools_ C-API. Pysam also
includes an interface for tabix_.
includes an interface for tabix.
Reference: Li et al. Bioinformatics. 2009 Aug 15;25(16):2078-9.
doi: 10.1093/bioinformatics/btp352.
The Sequence Alignment/Map format and SAMtools.

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academic/pysam/pysam.SlackBuild
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PRGNAM=pysam
VERSION=${VERSION:-0.12.0}
VERSION=${VERSION:-0.13.0}
BUILD=${BUILD:-1}
TAG=${TAG:-_SBo}

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academic/pysam/pysam.info
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PRGNAM="pysam"
VERSION="0.12.0"
VERSION="0.13.0"
HOMEPAGE="https://github.com/pysam-developers/pysam"
DOWNLOAD="https://github.com/pysam-developers/pysam/archive/v0.12.0/pysam-0.12.0.tar.gz"
MD5SUM="cc3c39951d0ac389925f338d31da27da"
DOWNLOAD="https://github.com/pysam-developers/pysam/archive/v0.13.0/pysam-0.13.0.tar.gz"
MD5SUM="2a7456eaf8b30f5a2668667b24aa89ce"
DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
REQUIRES=""

13
academic/pysam/slack-desc
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|-----handy-ruler------------------------------------------------------|
pysam: pysam (read/write genomic data sets)
pysam:
pysam: pysam is a python module for reading, manipulating
pysam: and writing genomic data sets.
pysam:
pysam:
pysam:
pysam:
pysam:
pysam: Pysam is a python module for reading and manipulating files in the
pysam: SAM, BAM, CRAM, VCF, and BCF format used for storing and writing
pysam: genomic data sets. Pysam is a lightweight wrapper of the samtools
pysam: and htslib C-API's and also includes an interface for tabix.
pysam:
pysam: Home: https://github.com/pysam-developers/pysam
pysam: Howto: https://pysam.readthedocs.io/en/latest/
pysam: