| .. |
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abntex
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aenig4
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academic/aenig4: Updated for version 1.04.
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2018-11-03 07:46:38 +07:00 |
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aline
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aliview
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academic/aliview: Updated for version 1.25.
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2018-12-24 08:56:07 +07:00 |
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amd
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academic/amd: Updated for SuiteSparse 5.4.0.
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2019-01-05 07:49:27 +07:00 |
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amplicon
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amplifx
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antiprism
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archaeopteryx
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academic/archaeopteryx: Updated for version 0.9928b.
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2018-12-24 08:56:55 +07:00 |
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aris
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arka
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armadillo
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academic/armadillo: Updated for version 8.100.0.
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2017-10-07 00:34:52 +01:00 |
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arpack
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arpack-ng
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academic/arpack-ng: Updated for version 3.7.0.
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2019-01-19 07:20:41 +07:00 |
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artha
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academic/artha: Mirror download url.
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2018-03-06 02:04:16 +07:00 |
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avl
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avogadro
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academic/avogadro: Mirror download url.
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2018-03-10 07:11:14 +07:00 |
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bcftools
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academic/bcftools: Added (BCF calling tools).
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2019-01-05 07:49:16 +07:00 |
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bedGraphToBigWig
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bedtools
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academic/bedtools: Updated for version 2.27.1.
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2018-01-13 07:13:04 +07:00 |
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biblesync
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academic/biblesync: Updated for version 2.0.1.
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2018-05-01 22:01:17 +01:00 |
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bibletime
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academic/bibletime: Updated for version 2.11.2.
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2018-06-28 22:22:10 +01:00 |
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bibus
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boinc
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academic/boinc: Updated for version 7.14.2.
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2018-12-22 08:44:24 +07:00 |
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bowtie
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bowtie2
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academic/bowtie2: Updated for version 2.3.4.3 + new maintainer.
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2019-01-05 07:49:15 +07:00 |
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bowtie2-legacy
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academic/bowtie2-legacy: Added (aligning sequencing reads).
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2018-12-24 08:59:33 +07:00 |
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bpp-core
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academic/bpp-core: Updated for version 2.4.1.
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2018-12-24 09:00:24 +07:00 |
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bpp-phyl
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academic/bpp-phyl: Updated for version 2.4.1.
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2018-12-24 09:01:05 +07:00 |
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bpp-phyl-omics
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academic/bpp-phyl-omics: Updated for version 2.4.1.
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2018-12-24 09:01:40 +07:00 |
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bpp-popgen
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academic/bpp-popgen: Updated for version 2.4.1.
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2018-12-24 09:02:22 +07:00 |
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bpp-seq
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academic/bpp-seq: Updated for version 2.4.1.
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2018-12-24 09:02:59 +07:00 |
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bpp-seq-omics
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academic/bpp-seq-omics: Updated for version 2.4.1.
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2018-12-24 09:03:37 +07:00 |
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bppsuite
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academic/bppsuite: Updated for version 2.4.1.
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2018-12-24 09:04:15 +07:00 |
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btf
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academic/btf: Updated for SuiteSparse 5.4.0.
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2019-01-05 07:49:29 +07:00 |
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bwa
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academic/bwa: Updated for version 0.7.17.
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2018-01-13 07:13:04 +07:00 |
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cadabra2
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academic/cadabra2: Fix DOWNLOAD url.
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2018-04-27 00:41:02 +07:00 |
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CAFS_divergence
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calc
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academic/calc: Update to 2.12.7.2
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2018-12-01 07:27:58 +07:00 |
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calcoo
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academic/calcoo: Fix ownership.
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2017-07-15 07:27:22 +07:00 |
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camd
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academic/camd: Updated for SuiteSparse 5.4.0.
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2019-01-05 07:49:27 +07:00 |
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cap3
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CAPS_coevolution
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cblas
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academic/cblas: Updated for version 3.8.0.
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2017-12-21 08:19:39 +07:00 |
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ccolamd
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academic/ccolamd: Updated for SuiteSparse 5.4.0.
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2019-01-05 07:49:28 +07:00 |
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celestia
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chemtool
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cholmod
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academic/cholmod: Updated for version 3.0.13.
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2019-01-05 07:49:29 +07:00 |
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cistrome-CEAS
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cistrome-conductGO
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academic/cistrome-conductGO: Fix ownership.
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2017-07-15 07:28:59 +07:00 |
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cistrome-extra
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academic/cistrome-extra: Updated for version git_20170829_6334683.
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2017-10-11 06:19:48 +07:00 |
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cistrome-MACS
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cistrome-mdseqpos
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academic/cistrome-mdseqpos: Updated for v. git_20170829_6334683.
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2017-10-11 06:19:48 +07:00 |
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clark-ugene
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academic/clark-ugene: Added (supervised sequence classification).
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2018-12-24 09:09:59 +07:00 |
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cld2
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academic/cld2: Fix build on current.
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2018-03-17 08:51:42 +07:00 |
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clustalo
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clustalw
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clustalx
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colamd
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academic/colamd: Updated for SuiteSparse 5.4.0.
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2019-01-05 07:49:28 +07:00 |
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convertall
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copasi
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academic/copasi: Fix DOWNLOAD_x86_64.
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2018-08-05 02:04:56 +07:00 |
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coq
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cryptominisat
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academic/cryptominisat: Fix MD5SUM.
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2018-12-26 02:35:20 +07:00 |
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csparse
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academic/csparse: Updated for SuiteSparse 5.4.0.
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2019-01-05 07:49:28 +07:00 |
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cufflinks
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academic/cufflinks: Update DEPS.
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2019-01-09 07:33:01 +07:00 |
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cutadapt
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academic/cutadapt: Updated for version 1.14.
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2017-10-11 06:19:48 +07:00 |
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cxsparse
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academic/cxsparse: Updated for SuiteSparse 5.4.0.
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2019-01-05 07:49:28 +07:00 |
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dakota
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academic/dakota: Updated for version 6.8.
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2018-06-07 14:33:56 +01:00 |
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Data2FCS
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diamond
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academic/diamond: Added (A sequence aligner).
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2018-12-24 09:11:11 +07:00 |
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drawtiming
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ds9
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academic/ds9: Updated for version 7.6.
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2018-05-12 06:58:27 +07:00 |
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easy_spice
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academic/easy_spice: Use tgz.
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2017-08-26 07:20:03 +07:00 |
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edsim51di
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academic/edsim51di: Updated for version 2.1.20.
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2017-06-28 11:35:31 +07:00 |
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EMBASSY
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EMBOSS
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engauge
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academic/engauge: Updated for version 10.10.
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2018-10-21 06:45:27 +07:00 |
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ent
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equalx
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ess
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academic/ess: Updated for version 17.11.
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2018-07-27 21:33:34 +07:00 |
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evopedia_qt
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exonerate
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academic/exonerate: Switch to https.
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2017-10-26 09:25:14 +07:00 |
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extrema
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fann
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fastqc
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academic/fastqc: Updated for version 0.11.8 + new maintainer.
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2018-12-22 00:03:06 -09:00 |
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FCSalyzer
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academic/FCSalyzer: Updated for version 0.9.16_alpha.
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2018-12-24 08:54:20 +07:00 |
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fet
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academic/fet Updated for version 5.37.5.
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2019-01-26 01:02:09 +07:00 |
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fiji
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academic/fiji: Added (ImageJ Distribution).
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2018-12-24 22:16:55 +07:00 |
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finchtv
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academic/finchtv: Updated for version 1.3.1.
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2017-10-11 06:19:49 +07:00 |
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fityk
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flann
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flashqard
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flexbar
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academic/flexbar: Updated for version 3.4.0.
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2018-07-07 06:54:16 +07:00 |
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free42
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academic/free42: Updated for version 2.0.4.
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2017-07-29 17:50:21 +07:00 |
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freechartgeany
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g3data
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galculator
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academic/galculator: Fix download url.
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2018-03-06 01:27:35 +07:00 |
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gaw3
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academic/gaw3: Updated for version 20170716.
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2017-12-02 06:30:53 +07:00 |
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Gblocks
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academic/Gblocks: Fix download url.
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2018-03-03 08:42:14 +07:00 |
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gcalctool
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gchemutils
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academic/gchemutils: Updated for version 0.14.17.
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2018-07-08 19:28:35 +01:00 |
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gcompris
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academic/gcompris: Updated for version 17.05.
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2017-12-27 18:10:01 -06:00 |
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geda-gaf
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gelemental
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geneconv
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academic/geneconv: Switch to https.
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2017-12-13 16:05:14 +07:00 |
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genius
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academic/genius: Updated for version 1.0.23.
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2018-02-17 07:42:45 +07:00 |
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genometools
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academic/genometools: Updated for version 1.5.10.
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2018-07-08 19:32:20 +01:00 |
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genpak
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GeoGebra
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academic/GeoGebra: Update homepage.
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2018-06-02 07:32:36 +07:00 |
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geomview
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gerbv
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ggobi
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ghemical
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glpk
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gnucap
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gp2fasta
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academic/gp2fasta: Update HOMEPAGE and DOWNLOAD urls.
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2017-08-12 06:58:19 +07:00 |
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gpredict
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academic/gpredict: Updated for version 2.3.
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2019-01-18 23:39:51 +07:00 |
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grace
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gresistor
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gretl
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academic/gretl: Updated for version 2017c.
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2017-07-29 17:50:22 +07:00 |
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Gridcoin-Research
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academic/Gridcoin-Research: Updated for version 4.0.1.0.
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2018-12-15 09:17:10 +07:00 |
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grpn
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gspiceui
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academic/gspiceui: Updated for version 1.1.00.
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2017-09-02 10:19:45 +01:00 |
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gtkwave
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gtypist
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gwyddion
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academic/gwyddion: Updated for version 2.52.
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2018-11-24 12:35:13 +07:00 |
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HMMER
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academic/HMMER: Updated for version 3.2.1.
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2018-06-17 22:34:10 +01:00 |
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hyphy
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academic/hyphy: Updated for version 2.3.14.
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2018-12-24 22:16:52 +07:00 |
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io_lib
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irsim
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isoelectric-point
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academic/isoelectric-point: Update homepage and download.
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2018-12-01 07:27:43 +07:00 |
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iTest
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itex2mml
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academic/itex2mml: Remove obsolete patch.
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2017-11-04 07:17:46 +07:00 |
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ITK
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academic/ITK: Updated for version 4.13.1.
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2018-09-08 08:37:51 +07:00 |
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jalview
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jellyfish_k-mer
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academic/jellyfish_k-mer: Added (k-mers counting tools).
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2018-12-25 05:33:47 +07:00 |
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jpicedt
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jugglinglab
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karma
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academic/karma: Fix library issue.
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2017-06-24 08:32:16 +07:00 |
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kile
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kiwisolver
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academic/kiwisolver: Added (Cassowary algorithm).
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2018-11-03 07:45:00 +07:00 |
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klavaro
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klu
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academic/klu: Updated for SuiteSparse 5.4.0.
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2019-01-05 07:49:29 +07:00 |
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knime
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academic/knime: Fix ownership.
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2017-07-15 07:27:43 +07:00 |
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kraken
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academic/kraken: Added (Assigning Taxonomic Labels).
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2018-12-25 05:38:56 +07:00 |
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Kst
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ktikz
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kurso
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labplot2
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ladr
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academic/ladr: Switch homepage and download to https.
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2018-10-06 07:25:21 +07:00 |
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lalnview
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lapack95
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lapacke
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academic/lapacke: Build the deprecated routines.
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2019-02-02 08:12:07 +07:00 |
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ldl
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academic/ldl: Updated for SuiteSparse 5.4.0.
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2019-01-05 07:49:28 +07:00 |
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libghemical
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libqalculate
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academic/libqalculate: Updated for version 2.8.2
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2018-12-09 13:17:30 +07:00 |
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link-grammar
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loggerpro
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academic/loggerpro: Update homepage.
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2018-07-17 07:15:39 +07:00 |
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lpsolve
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mafft
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academic/mafft: Updated for version 7.407.
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2018-12-24 09:15:34 +07:00 |
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magic
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mathics
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mathomatic
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matio
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maxima
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megax
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academic/megax: Updated for version 10.0.5_1.
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2018-12-24 09:21:25 +07:00 |
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meme-suite
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academic/meme-suite: Added (Motif based sequence analysis tools).
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2017-10-11 06:19:52 +07:00 |
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mendeleydesktop
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academic/mendeleydesktop: Updated homepage link.
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2017-05-20 06:55:02 +07:00 |
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metis
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mkDSSP
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Mnemosyne
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academic/Mnemosyne: Updated for version 2.6.1.
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2019-02-02 11:57:59 +07:00 |
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mpmath
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academic/mpmath: Switch to i586.
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2017-06-21 08:51:22 +01:00 |
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mrbayes
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academic/mrbayes: Fixed download url.
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2018-06-23 08:44:06 +07:00 |
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muscle
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ncbi-blast
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academic/ncbi-blast: Update script.
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2018-12-24 09:24:23 +07:00 |
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ncbi-blast+
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academic/ncbi-blast+: Updated for version 2.8.1.
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2019-01-24 07:48:59 +07:00 |
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ncbi-rmblastn
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academic/ncbi-rmblastn: Update DEP.
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2018-12-24 22:16:58 +07:00 |
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ncview
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academic/ncview: Added (a netCDF visual browser).
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2018-04-07 08:13:13 +07:00 |
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ngspice
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academic/ngspice: Update script.
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2019-02-08 20:58:29 +07:00 |
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novocraft
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academic/novocraft: Updated for version 3.09.01.
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2018-12-01 07:27:49 +07:00 |
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octave
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academic/octave: Updated for version 4.4.1.
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2019-01-05 07:49:30 +07:00 |
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OpenFOAM
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academic/OpenFOAM: Updated for version 6.
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2018-07-17 07:15:42 +07:00 |
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pal2nal
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academic/pal2nal: Updated for version 14.1.
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2018-01-13 07:13:04 +07:00 |
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paml
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academic/paml: Updated for version 4.9h.
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2018-06-17 23:34:22 +01:00 |
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pamlX
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academic/pamlX: Updated to build with paml-4.9h.
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2018-06-17 23:41:03 +01:00 |
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papi
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academic/papi: Fixed ownership.
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2018-03-10 07:11:02 +07:00 |
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pari
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academic/pari: Updated for version 2.11.1.
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2019-01-05 07:49:21 +07:00 |
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parmetis
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academic/parmetis: Update info.
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2018-05-29 08:25:33 +07:00 |
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patsy
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pcb
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academic/pcb: Updated for version 4.0.2.
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2018-01-10 23:55:51 +07:00 |
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perlprimer
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academic/perlprimer: Updated for version 1.2.3_f7d3bd0.
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2018-07-08 19:40:22 +01:00 |
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PhyML
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academic/PhyML: Updated for version 3.3.20180621.
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2018-07-08 19:25:48 +01:00 |
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pianobooster
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plasmidomics
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prank-msa
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academic/prank-msa: Updated for version 170427.
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2017-10-11 06:19:49 +07:00 |
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primer3
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academic/primer3: Updated for version 2.4.0.
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2018-07-08 19:42:08 +01:00 |
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pspp
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academic/pspp: Updated for version 1.2.0.
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2018-11-27 08:22:03 +07:00 |
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pulseview
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academic/pulseview: Updated for version 0.4.1.
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2018-12-16 16:24:58 +07:00 |
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PyAMG
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academic/PyAMG: Update HOMEPAGE.
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2017-06-06 07:56:33 +07:00 |
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pyCRAC
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academic/pyCRAC: Updated for version 1.3.3.
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2018-12-01 07:27:48 +07:00 |
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pyfits
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academic/pyfits: Update homepage.
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2018-12-01 07:27:41 +07:00 |
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pysam
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academic/pysam: Updated for version 0.15.2.
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2019-01-18 23:39:54 +07:00 |
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qalculate-gtk
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academic/qalculate-gtk: Updated for version 2.8.2
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2018-12-09 13:17:30 +07:00 |
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qcl
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academic/qcl: Added (A Programming Language for Quantum Computers).
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2018-02-17 07:42:46 +07:00 |
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qhull
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academic/qhull: Updated for version 2015.2.
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2017-06-30 13:05:01 +07:00 |
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qrupdate
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academic/qrupdate: Update URLs and patches.
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2019-01-05 07:49:30 +07:00 |
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QtiPlot
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academic/QtiPlot: Updated homepage.
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2018-05-02 22:58:31 +01:00 |
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qtoctave
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academic/qtoctave: Mirror download url.
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2018-03-06 02:04:16 +07:00 |
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qucs
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academic/qucs: Noted orphan status (no SBo maintainer).
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2018-06-23 08:44:12 +07:00 |
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R
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academic/R: Updated for version 3.5.1.
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2018-07-21 06:53:34 +07:00 |
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rbio
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academic/rbio: Updated for SuiteSparse 5.4.0.
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2019-01-05 07:49:29 +07:00 |
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reduce-algebra
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academic/reduce-algebra: Updated for version 20180920svn4765.
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2018-09-21 21:40:29 +01:00 |
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RepeatMasker
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academic/RepeatMasker: Updated for version 4.0.8.
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2018-12-24 08:55:30 +07:00 |
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root
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sage
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academic/sage: Unmaintained.
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2018-08-11 07:23:09 +07:00 |
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sage-bin
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academic/sage-bin: Added (python based mathematics software).
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2018-09-15 17:50:08 +01:00 |
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samtools
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academic/samtools: Updated for version 1.9 + new maintainer.
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2019-01-05 07:49:17 +07:00 |
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samtools-legacy
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academic/samtools-legacy: Fix path.
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2019-01-09 07:31:53 +07:00 |
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scidavis
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academic/scidavis: Patched to fix crashes.
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2018-08-02 19:40:39 +07:00 |
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scilab
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academic/scilab: Updated for version 6.0.1.
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2018-08-11 07:23:09 +07:00 |
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scipy
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academic/scipy: Update script.
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2019-02-08 20:25:34 +07:00 |
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scipy3
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academic/scipy3: Updated for version 1.1.0.
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2019-02-08 20:26:26 +07:00 |
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seaview
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academic/seaview: Updated for version 4.7.
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2018-06-17 23:42:33 +01:00 |
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sequence-analysis
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Shark
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academic/Shark: Added (machine learning library).
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2018-04-28 06:40:13 +07:00 |
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sigrok-cli
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academic/sigrok-cli: Updated for version 0.7.1.
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2018-12-16 16:24:13 +07:00 |
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siril
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academic/siril: Fix doc ownership, use our cflags.
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2017-07-12 16:39:17 +01:00 |
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slatec
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smath-studio
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academic/smath-studio: Changed maintainer.
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2018-06-23 08:44:12 +07:00 |
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snpEff
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academic/snpEff: Updated for version 4.3t.
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2018-01-13 07:13:05 +07:00 |
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solfege
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academic/solfege: Update HOMEPAGE and DOWNLOAD urls.
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2017-06-03 07:59:40 +07:00 |
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spades
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academic/spades: Updated for version 3.13.0.
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2018-12-24 10:55:58 +07:00 |
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speedcrunch
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academic/speedcrunch: Fixed tarball handling.
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2018-01-21 11:35:28 +00:00 |
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spiceopus
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spidey
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academic/spidey: Update HOMEPAGE.
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2017-05-27 07:29:56 +07:00 |
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spqr
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academic/spqr: Updated for version 2.0.9.
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2019-01-05 07:49:30 +07:00 |
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squizz
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staden
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STAR
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academic/STAR: Updated for version 2.7.0c.
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2019-02-15 07:48:17 +07:00 |
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stellarium
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academic/stellarium: Updated for version 0.18.1.
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2018-08-11 07:23:05 +07:00 |
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stringtie
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academic/stringtie: Added (Assembler of RNA-Seq alignments).
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2018-12-24 22:16:51 +07:00 |
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suitesparse
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academic/suitesparse: Updated for version 5.3.0
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2018-07-07 06:54:25 +07:00 |
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suitesparseconfig
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academic/suitesparseconfig: Updated for version 5.4.0.
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2019-01-05 07:49:27 +07:00 |
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sundials
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academic/sundials: Updated for version 3.1.1.
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2018-08-02 19:22:21 +07:00 |
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sword
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academic/sword: Fix for newer icu4c.
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2018-04-27 01:22:08 +07:00 |
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sword-data-kjv
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academic/sword-data-kjv: Updated for version 1.8.1.
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2018-01-17 19:46:31 +07:00 |
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sympy
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academic/sympy: Updated for version 1.3.
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2019-02-09 00:11:38 +07:00 |
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t_coffee
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tabix
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tabix-legacy
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academic/tabix-legacy: Added (Generic indexer).
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2018-12-24 22:16:45 +07:00 |
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tilem
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tilem2
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academic/tilem2: Fix ownership.
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2017-07-15 07:28:25 +07:00 |
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tkgate
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academic/tkgate: Mirror download url.
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2018-03-10 07:11:14 +07:00 |
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topdraw
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tophat
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academic/tophat: Force a single make job.
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2017-07-29 17:50:23 +07:00 |
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TreeGraph
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academic/TreeGraph: Added (A feature rich phylogenetic tree editor).
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2018-06-23 08:44:00 +07:00 |
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treeviewx
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academic/treeviewx: Added (Program to display phylogenetic trees).
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2018-07-10 10:07:47 +01:00 |
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trfind
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academic/trfind: Fix executable for use with RepeatMasker.
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2018-01-17 19:46:30 +07:00 |
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trimmomatic
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academic/trimmomatic: Added (Trimming Tool).
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2018-12-24 22:16:59 +07:00 |
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tuxmath
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academic/tuxmath: Update homepage.
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2018-07-17 07:15:40 +07:00 |
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tuxtype2
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academic/tuxtype2: Update homepage.
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2018-07-17 07:15:40 +07:00 |
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ucsc-blat
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academic/ucsc-blat: Update HOMEPAGE.
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2017-05-27 07:30:10 +07:00 |
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ugene
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academic/ugene: Updated for version 1.31.1.
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2018-12-24 22:17:00 +07:00 |
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umfpack
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academic/umfpack: Updated for version 5.7.8.
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2019-01-05 07:49:29 +07:00 |
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units
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academic/units: Updated for version 2.18.
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2018-11-10 07:46:57 +07:00 |
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vcftools
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academic/vcftools: Updated for version 0.1.16.
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2018-12-24 22:16:53 +07:00 |
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verilog
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veusz
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academic/veusz: Fix build against new Qt5.
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2018-09-23 06:11:51 +07:00 |
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wehi-cellsymphony
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wehi-deid
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wehi-hackit
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wehi-weasel
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academic/wehi-weasel: Updated for version 3.5.0.17.
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2018-12-24 22:16:53 +07:00 |
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WEVOTE
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academic/WEVOTE: Added (WEighted VOting Taxonomic idEntification).
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2018-12-24 08:52:55 +07:00 |
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wmcalc
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academic/wmcalc: Updated for version 0.7.
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2018-09-15 19:23:41 +01:00 |
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WordNet
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academic/WordNet: Switch homepage to https.
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2018-03-17 13:58:49 +00:00 |
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wxmacmolplt
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wxMaxima
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academic/wxMaxima: Switch homepage to https.
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2018-10-06 07:25:18 +07:00 |
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xcircuit
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xephem
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xflr5
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academic/xflr5: Updated for version 6.43.
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2019-02-01 23:55:33 +07:00 |
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xfoil
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xiphos
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academic/xiphos: Updated for version 4.1.0.
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2018-04-28 06:40:13 +07:00 |
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xoscope
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Xyce
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academic/Xyce: Update info.
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2018-05-29 08:28:21 +07:00 |
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ZeGrapher
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academic/ZeGrapher: Added (math graphing).
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2018-01-19 11:45:00 +00:00 |
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zotero
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academic/zotero: Updated for version 5.0.60.
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2019-01-24 20:02:25 +07:00 |
