| .. |
|
3D-ICE
|
academic/3D-ICE: Added (Thermal Emulator Library).
|
2022-12-03 11:30:33 +07:00 |
|
abntex
|
academic/abntex: Updated for version 20200715_f0a4d3c.
|
2022-02-27 22:29:04 -06:00 |
|
aenig4
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
aeskulap
|
academic/aeskulap: Fix shebang.
|
2022-04-09 15:45:58 +07:00 |
|
aline
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
aliview
|
academic/aliview: Updated for version 1.28.
|
2022-07-29 21:57:48 +07:00 |
|
AlphaPlot
|
academic/AlphaPlot: Added (data analysis and visualization)
|
2022-04-30 13:51:47 +07:00 |
|
amd
|
academic/amd: Change i486 to i586
|
2022-06-07 02:23:02 -04:00 |
|
amplicon
|
All: Support $PRINT_PACKAGE_NAME env var
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2021-07-17 21:55:09 +02:00 |
|
amplifx
|
academic/amplifx: Fix download URL.
|
2022-04-02 12:20:16 -04:00 |
|
antiprism
|
academic/antiprism: Change i486 to i586
|
2022-06-07 02:23:02 -04:00 |
|
archaeopteryx
|
academic/archaeopteryx: Use zulu-openjdk11.
|
2022-03-03 15:56:50 +07:00 |
|
aris
|
academic/aris: New maintainer. Update patch.
|
2022-08-13 10:40:37 +07:00 |
|
arka
|
All: Support $PRINT_PACKAGE_NAME env var
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2021-07-17 21:55:09 +02:00 |
|
armadillo
|
academic/armadillo: Fix download URL, doc dir.
|
2022-04-02 12:27:10 -04:00 |
|
arpack
|
academic/arpack: Change i486 to i586
|
2022-06-07 02:23:02 -04:00 |
|
arpack-ng
|
academic/arpack-ng: Change i486 to i586
|
2022-06-07 02:23:02 -04:00 |
|
artha
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
avl
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
avogadroapp
|
academic/avogadroapp: Updated for version 1.97.0.
|
2022-08-13 10:40:39 +07:00 |
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avogadrolibs
|
academic/avogadrolibs: Patched to fix cmake errors.
|
2023-03-25 10:01:52 +07:00 |
|
bcftools
|
academic/bcftools: Upgrade to version 1.16
|
2022-10-15 09:25:31 +07:00 |
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bedGraphToBigWig
|
academic/bedGraphToBigWig: Strip binary.
|
2022-04-04 12:54:04 -04:00 |
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bedtools
|
All: Support $PRINT_PACKAGE_NAME env var
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2021-07-17 21:55:09 +02:00 |
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biblesync
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All: Support $PRINT_PACKAGE_NAME env var
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2021-07-17 21:55:09 +02:00 |
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bibletime
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academic/bibletime: Update email address.
|
2022-06-09 13:19:35 -04:00 |
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bibus
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All: Support $PRINT_PACKAGE_NAME env var
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2021-07-17 21:55:09 +02:00 |
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biopython
|
academic/biopython: Fix deps.
|
2022-11-12 22:33:12 +07:00 |
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boinc
|
academic/boinc: Updated for version 7.20.5
|
2022-12-10 07:43:15 +07:00 |
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bowtie
|
academic/bowtie: Updated for version 1.3.1.
|
2022-10-15 10:47:26 +07:00 |
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bowtie2
|
academic/bowtie2: ugraded to version 2.5.0
|
2022-11-24 22:13:28 +07:00 |
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bowtie2-legacy
|
academic/bowtie2-legacy: Patch source.
|
2022-03-03 09:38:11 +00:00 |
|
bpp-core
|
academic/bpp-core: Added (Bio++ Core Library)
|
2022-09-08 08:11:03 +01:00 |
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bpp-phyl
|
academic/bpp-phyl: Added (Bio++ Phylogenetic Library)
|
2022-09-08 08:11:03 +01:00 |
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bpp-phyl-omics
|
academic/bpp-phyl-omics: Added (Bio++ Phylogenetic Omics Library)
|
2022-09-08 08:11:04 +01:00 |
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bpp-popgen
|
academic/bpp-popgen: Added (Bio++ Population Genetics Library)
|
2022-09-08 08:11:04 +01:00 |
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bpp-seq
|
academic/bpp-seq: Added (Bio++ Sequence library)
|
2022-09-08 08:11:03 +01:00 |
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bpp-seq-omics
|
academic/bpp-seq-omics: Added (Bio++ Sequence Omics Library)
|
2022-09-08 08:11:03 +01:00 |
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bpp1.9-numcalc
|
academic/bpp1.9-numcalc: Added (Bio++ 1.9 NumCalc Library)
|
2022-09-09 02:55:53 +01:00 |
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bpp1.9-phyl
|
academic/bpp1.9-phyl: Added (Bio++ 1.9 Phyl Library)
|
2022-09-09 03:07:45 +01:00 |
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bpp1.9-seq
|
academic/bpp1.9-seq: Added (Bio++ 1.9 Seq Library)
|
2022-09-09 02:58:46 +01:00 |
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bpp1.9-utils
|
academic/bpp1.9-utils: Added (Bio++ 1.9 Utils Library)
|
2022-09-09 02:53:27 +01:00 |
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bppsuite
|
academic/bppsuite: Added (Bio++ program suite)
|
2022-09-08 08:11:04 +01:00 |
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btf
|
academic/btf: Change i486 to i586
|
2022-06-07 02:23:03 -04:00 |
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bwa
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All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
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cadabra2
|
academic/cadabra2: Update README.
|
2023-01-07 08:13:38 +07:00 |
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CAFS_divergence
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All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
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calc
|
academic/calc: Updated for version 2.14.0.14.
|
2022-02-06 11:42:42 +07:00 |
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calcoo
|
various: Use zulu jdk builds for REQUIRES.
|
2022-03-03 15:56:51 +07:00 |
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camd
|
academic/camd: Change i486 to i586
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2022-06-07 02:23:03 -04:00 |
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cap3
|
academic/cap3: DOWLOAD updated.
|
2022-08-06 20:16:08 +07:00 |
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CAPS_coevolution
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
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cblas
|
academic/cblas: Updated for version 3.11.0
|
2022-11-26 09:11:52 +07:00 |
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ccolamd
|
academic/ccolamd: Change i486 to i586
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2022-06-07 02:23:03 -04:00 |
|
cdo
|
academic/cdo: Updated for version 2.1.1.
|
2022-12-17 10:50:29 +07:00 |
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celestia
|
academic/celestia: Wrap README at 72 columns.
|
2022-03-12 14:34:16 -05:00 |
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chartgeany
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All: Support $PRINT_PACKAGE_NAME env var
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2021-07-17 21:55:09 +02:00 |
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chemtool
|
academic/chemtool: Fix build failure with gcc10.
|
2022-02-21 02:41:03 -06:00 |
|
cholmod
|
academic/cholmod: Change i486 to i586
|
2022-06-07 02:23:03 -04:00 |
|
cistrome-CEAS
|
All: Support $PRINT_PACKAGE_NAME env var
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2021-07-17 21:55:09 +02:00 |
|
cistrome-conductGO
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
cistrome-extra
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
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cistrome-MACS
|
academic/cistrome-MACS: Handle content-disposition download.
|
2022-03-05 00:18:21 +13:00 |
|
cistrome-mdseqpos
|
academic/cistrome-mdseqpos: Fix deps.
|
2022-11-12 22:33:12 +07:00 |
|
clark-ugene
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
cld2
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
clustalo
|
academic/clustalo: Remove .la files.
|
2022-03-08 09:44:26 +07:00 |
|
clustalw
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
clustalx
|
academic/clustalx: Updated to use qmake-qt5. BUILD bumped.
|
2022-08-06 20:16:07 +07:00 |
|
colamd
|
academic/colamd: Change i486 to i586
|
2022-06-07 02:23:03 -04:00 |
|
colin
|
academic/colin: Use qt4.
|
2022-02-27 22:29:05 -06:00 |
|
convertall
|
academic/convertall: Fix docs.
|
2022-04-05 12:28:40 -04:00 |
|
copasi
|
academic/copasi: Updated for version 4.39.272.
|
2023-02-04 07:19:52 +07:00 |
|
cryptominisat
|
academic/cryptominisat: Updated for version 5.11.3.
|
2022-10-15 10:47:22 +07:00 |
|
csparse
|
academic/csparse: Change i486 to i586
|
2022-06-07 02:23:03 -04:00 |
|
cufflinks
|
academic/cufflinks: Fix info file.
|
2022-03-12 11:26:42 +13:00 |
|
cutadapt
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
cvc4
|
various: Use zulu jdk builds for REQUIRES.
|
2022-03-03 15:56:51 +07:00 |
|
cxsparse
|
academic/cxsparse: Change i486 to i586
|
2022-06-07 02:23:03 -04:00 |
|
dakota
|
academic/dakota: Updated for version 6.17.0.
|
2023-01-28 08:23:05 +07:00 |
|
Data2FCS
|
academic/Data2FCS: Use zulu-openjdk11.
|
2022-03-03 15:56:48 +07:00 |
|
datamash
|
academic/datamash: Updated for version 1.8.
|
2022-09-04 04:44:58 +01:00 |
|
DendroPy
|
academic/DendroPy: Updated for version 4.5.1.
|
2022-09-08 08:11:03 +01:00 |
|
diamond
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
dimod
|
academic/dimod: Added (A shared API for samplers)
|
2022-11-12 22:32:58 +07:00 |
|
DRAMPower
|
academic/DRAMPower: Fix github tarball handling.
|
2022-11-26 09:11:46 +07:00 |
|
DRAMSim2
|
academic/DRAMSim2: Added (A cycle accurate DRAM simulator)
|
2022-10-15 10:47:28 +07:00 |
|
DRAMsim3
|
academic/DRAMsim3: Fix github tarball handling.
|
2022-11-05 21:15:16 +07:00 |
|
DRAMSys
|
academic/DRAMSys: Fix github tarball handling.
|
2023-01-07 08:13:28 +07:00 |
|
ds9
|
academic/ds9: Updated for version 8.4.1.
|
2023-02-04 07:19:56 +07:00 |
|
dwave-cloud-client
|
academic/dwave-cloud-client: Added (REST interface for D-Wave API)
|
2022-11-12 22:32:58 +07:00 |
|
dwave-greedy
|
academic/dwave-greedy: Added (steepest descent solver for (BQM))
|
2022-11-12 22:32:58 +07:00 |
|
dwave-hybrid
|
academic/dwave-hybrid: Added (Hybrid Async Decomposition Sampler)
|
2022-11-12 22:32:59 +07:00 |
|
dwave-inspector
|
academic/dwave-inspector: Added (visualize D-Wave structured solver)
|
2022-11-12 22:32:59 +07:00 |
|
dwave-neal
|
academic/dwave-neal: Added (a simulated annealing sampler)
|
2022-11-12 22:32:59 +07:00 |
|
dwave-networkx
|
academic/dwave-networkx: Added (D-Wave Systems network exploration)
|
2022-11-12 22:32:59 +07:00 |
|
dwave-ocean-sdk
|
academic/dwave-ocean-sdk: Fix deps.
|
2022-11-19 10:08:09 +07:00 |
|
dwave-preprocessing
|
academic/dwave-preprocessing: Added (binary quadratic models tools)
|
2022-11-12 22:32:59 +07:00 |
|
dwave-system
|
academic/dwave-system: Added (basic API for D-Wave system)
|
2022-11-12 22:32:59 +07:00 |
|
dwave-tabu
|
academic/dwave-tabu: Added (C/C++ implementation of MST2 for QUBO)
|
2022-11-12 22:32:59 +07:00 |
|
dwavebinarycsp
|
academic/dwavebinarycsp: Added (contruct binary quadratic models)
|
2022-11-12 22:32:58 +07:00 |
|
easy_spice
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
ed-v6
|
academic/ed-v6: Fix github tarball handling.
|
2022-03-01 19:35:43 +07:00 |
|
edsim51di
|
academic/edsim51di: Update DOWNLOAD to https.
|
2022-03-04 02:48:05 +00:00 |
|
elk
|
academic/elk: Fix SlackBuild permissions.
|
2022-11-12 22:33:05 +07:00 |
|
EMBASSY
|
academic/EMBASSY: Update binaries location.
|
2022-07-29 22:21:46 +07:00 |
|
EMBOSS
|
academic/EMBOSS: Update binaries location.
|
2022-07-29 22:20:39 +07:00 |
|
engauge
|
academic/engauge: Updated for version 12.1.
|
2022-02-27 22:29:05 -06:00 |
|
ent
|
academic/ent: Update email address.
|
2022-06-08 12:25:40 -04:00 |
|
eprover
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
equalx
|
academic/equalx: Update email address.
|
2022-06-08 12:25:40 -04:00 |
|
ess
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
evopedia_qt
|
academic/evopedia_qt: Use qt4.
|
2022-02-27 22:29:05 -06:00 |
|
exonerate
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
extrema
|
academic/extrema: Remove .la files.
|
2022-03-08 09:44:26 +07:00 |
|
fann
|
academic/fann: Change i486 to i586
|
2022-06-07 02:23:03 -04:00 |
|
fastqc
|
various: Use zulu jdk builds for REQUIRES.
|
2022-03-03 15:56:51 +07:00 |
|
FCSalyzer
|
academic/FCSalyzer: Handle url-encoded filenames.
|
2022-03-05 00:17:45 +13:00 |
|
fet
|
academic/fet: Updated for version 6.8.7.
|
2023-03-25 10:01:49 +07:00 |
|
fiji
|
academic/fiji: Updated for version 20220414_1745.
|
2022-08-06 20:16:08 +07:00 |
|
finchtv
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
fityk
|
academic/fityk: Fix wxPython/wxGTK3 conflict.
|
2022-03-09 17:20:43 +07:00 |
|
flann
|
academic/flann: Fix building with the newer cmake, cleanups.
|
2022-02-06 15:47:07 +07:00 |
|
flexbar
|
academic/flexbar: Update copyright year.
|
2021-10-16 00:20:48 +07:00 |
|
free42
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
FreeFem
|
academic/FreeFem: Updated for version 4.12.
|
2023-01-07 08:03:29 +07:00 |
|
g3data
|
academic/g3data: Update github tarball handling.
|
2022-03-01 19:35:44 +07:00 |
|
Gabedit
|
academic/Gabedit: Install references.
|
2022-07-09 10:06:07 +07:00 |
|
galculator
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
gaw3
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
Gblocks
|
academic/Gblocks: Fix download.
|
2022-02-27 22:29:06 -06:00 |
|
gchemutils
|
academic/gchemutils: Fix typo in script.
|
2022-03-09 14:41:35 -05:00 |
|
gcompris-qt
|
academic/gcompris-qt: Updated for version 3.1.
|
2023-01-28 08:23:07 +07:00 |
|
geda-gaf
|
academic/geda-gaf: Remove .la files.
|
2022-03-08 09:44:26 +07:00 |
|
gelemental
|
academic/gelemental: Updated for version 2.0.1.
|
2022-10-15 10:47:27 +07:00 |
|
gem5
|
academic/gem5: Added (open-source system-level & CPU simulator)
|
2022-10-29 10:28:33 +07:00 |
|
geneconv
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
genius
|
academic/genius: Updated for version 1.0.27.
|
2022-02-27 22:29:05 -06:00 |
|
genometools
|
academic/genometools: Updated for version 1.6.2.
|
2022-09-04 04:51:14 +01:00 |
|
genpak
|
academic/genpak: Fix docs.
|
2022-04-09 15:45:11 +07:00 |
|
GeoGebra
|
academic/GeoGebra: Use zulu-openjdk7.
|
2022-03-03 15:56:45 +07:00 |
|
geomview
|
academic/geomview: Updated for version 1.9.5.
|
2023-02-04 07:19:52 +07:00 |
|
gerbv
|
academic/gerbv: Remove .la files.
|
2022-03-08 09:44:27 +07:00 |
|
getdp
|
academic/getdp: Updated for version 3.5.0.
|
2022-08-13 10:40:35 +07:00 |
|
getfem
|
academic/getfem: Fix deps.
|
2022-11-12 22:33:19 +07:00 |
|
ggobi
|
academic/ggobi: Updated for version 2.1.11.
|
2022-03-09 17:20:42 +07:00 |
|
ghemical
|
academic/ghemical: Fix build.
|
2022-02-27 22:29:05 -06:00 |
|
glpk
|
academic/glpk: Remove .la files.
|
2022-03-08 09:44:25 +07:00 |
|
glvis
|
academic/glvis: Added (finite element visualization tool).
|
2022-11-25 14:22:50 +07:00 |
|
gmsh
|
academic/gmsh: Updated for version 4.11.1.
|
2023-01-14 08:50:10 +07:00 |
|
gnucap
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
gp2fasta
|
academic/gp2fasta: Change i486 to i586
|
2022-06-07 02:23:03 -04:00 |
|
gpredict
|
academic/gpredict: revert to latest stable version 2.2.1
|
2022-02-24 22:05:13 +07:00 |
|
grace
|
academic/grace: Update download url.
|
2022-09-10 15:19:08 +07:00 |
|
gresistor
|
academic/gresistor: Change i486 to i586
|
2022-06-07 02:23:03 -04:00 |
|
gretl
|
academic/gretl: Remove .la files.
|
2022-03-08 09:44:27 +07:00 |
|
gri
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
Gridcoin-Research
|
academic/Gridcoin-Research: fix md5sum
|
2022-12-03 11:46:53 +07:00 |
|
gromacs
|
academic/gromacs: Minor template nitpick.
|
2023-02-18 10:07:13 +07:00 |
|
grpn
|
academic/grpn: Change i486 to i586
|
2022-06-07 02:23:03 -04:00 |
|
gspiceui
|
academic/gspiceui: Depend on wxGTK3 instead of wxPython3
|
2021-10-02 16:50:37 +07:00 |
|
gtkwave
|
academic/gtkwave: Updated for version 3.3.111.
|
2022-02-27 22:29:05 -06:00 |
|
gtypist
|
academic/gtypist: Updated maintainer info.
|
2022-11-18 22:02:50 +07:00 |
|
gwyddion
|
academic/gwyddion: Updated for version 2.62.
|
2022-11-12 22:32:56 +07:00 |
|
h5utils
|
academic/h5utils: Updated for version 1.13.2.
|
2023-02-18 10:06:44 +07:00 |
|
harminv
|
academic/harminv: Updated for version 1.4.2.
|
2023-02-18 10:06:44 +07:00 |
|
HMMER
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
hyphy
|
academic/hyphy: Updated for version 2.5.42.
|
2022-10-15 10:47:27 +07:00 |
|
IGV
|
academic/IGV: Updated for version 2.14.1.
|
2022-10-15 10:47:27 +07:00 |
|
io_lib
|
academic/io_lib: Remove .la files.
|
2022-03-08 09:44:28 +07:00 |
|
iqtree
|
academic/iqtree: Added (Efficient phylogenomic software by ML)
|
2022-09-09 04:23:03 +01:00 |
|
irsim
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
isoelectric-point
|
academic/isoelectric-point: Change i486 to i586
|
2022-06-07 02:23:04 -04:00 |
|
iTest
|
academic/iTest: Use qt4.
|
2022-02-27 22:29:06 -06:00 |
|
itex2mml
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
ITK
|
academic/ITK: Update the internal patch for gcc 11.x.
|
2021-08-19 18:33:48 +07:00 |
|
jalview
|
academic/jalview: Updated for version 2.11.2.4.
|
2022-10-15 10:47:27 +07:00 |
|
jellyfish_k-mer
|
academic/jellyfish_k-mer: Remove .la files.
|
2022-03-08 09:44:28 +07:00 |
|
jpicedt
|
academic/jpicedt: Change i486 to i586
|
2022-06-07 02:23:04 -04:00 |
|
jugglinglab
|
various: Use zulu jdk builds for REQUIRES.
|
2022-03-03 15:56:51 +07:00 |
|
karma
|
academic/karma: Allow ARCH=i586 in environment.
|
2022-03-20 20:45:13 +07:00 |
|
klavaro
|
academic/klavaro: Updated for version 3.14.
|
2022-12-31 09:14:42 +07:00 |
|
klu
|
academic/klu: Change i486 to i586
|
2022-06-07 02:23:04 -04:00 |
|
knime
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
kraken
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
Kst
|
academic/Kst: Updated for version 20221025_5fdd819.
|
2023-02-22 12:09:51 +07:00 |
|
ktikz
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
kurso
|
academic/kurso: x86 is unsupported.
|
2022-03-12 11:30:45 +13:00 |
|
labplot2
|
academic/labplot2: Align with template.
|
2023-02-18 10:07:03 +07:00 |
|
ladr
|
academic/ladr: Wrap README at 72 columns.
|
2022-03-12 14:35:24 -05:00 |
|
laghos
|
academic/laghos: Added (LAGrangian High-Order Solver)
|
2022-12-17 09:13:53 +07:00 |
|
lalnview
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
lapack95
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
lapacke
|
academic/lapacke: Updated for version 3.11.0
|
2022-11-26 09:11:52 +07:00 |
|
latex2html
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
ldl
|
academic/ldl: Change i486 to i586
|
2022-06-07 02:23:04 -04:00 |
|
libghemical
|
academic/libghemical: Change i486 to i586
|
2022-06-07 02:23:04 -04:00 |
|
link-grammar
|
academic/link-grammar: Change i486 to i586
|
2022-06-07 02:23:04 -04:00 |
|
locarna
|
academic/locarna: Remove .la files.
|
2022-03-08 09:44:28 +07:00 |
|
lpsolve
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
mafft
|
academic/mafft: Updated for version 7.505.
|
2022-09-08 08:11:03 +01:00 |
|
magic
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
mathics
|
academic/mathics: Fix deps.
|
2022-11-12 22:33:12 +07:00 |
|
mathjax2
|
academic/mathjax2: Fix github tarball handling.
|
2022-03-01 19:35:44 +07:00 |
|
mathomatic
|
academic/mathomatic: Change i486 to i586
|
2022-06-07 02:23:04 -04:00 |
|
matio
|
academic/matio: Updated for version 1.5.23.
|
2023-02-11 09:30:46 +07:00 |
|
maxima
|
academic/maxima: Updated for version 5.46.0.
|
2022-10-08 09:12:41 +07:00 |
|
meep
|
academic/meep: Updated for version 1.25.0.
|
2023-02-25 09:18:06 +07:00 |
|
megax
|
academic/megax: Updated for version 11.0.11_1.
|
2022-08-06 20:16:04 +07:00 |
|
meme-db-gomo
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
meme-db-motif
|
academic/meme-db-motif: Updated for version 12.23.
|
2022-09-04 04:57:25 +01:00 |
|
meme-db-tgene
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
meme-suite
|
academic/meme-suite: Updated for version 5.4.1.
|
2022-09-04 05:41:14 +01:00 |
|
mendeleydesktop
|
academic/mendeleydesktop: Change i486 to i586
|
2022-06-07 02:23:04 -04:00 |
|
metalwalls
|
academic/metalwalls: Added (Molecular modelling systems).
|
2022-10-19 01:02:36 +07:00 |
|
MetaPhlAn2
|
academic/MetaPhlAn2: Fix ARCH and deps.
|
2022-11-12 22:33:20 +07:00 |
|
metis
|
academic/metis: Change i486 to i586
|
2022-06-07 02:23:04 -04:00 |
|
mfem
|
academic/mfem: Added (library for finite element methods).
|
2022-11-20 09:37:41 +07:00 |
|
minorminer
|
academic/minorminer: Added (heuristic tool for minor embedding).
|
2022-11-12 10:48:01 +07:00 |
|
mkDSSP
|
academic/mkDSSP: Updated for version 4.0.3, switch to cmake.
|
2022-02-07 23:04:38 +07:00 |
|
molequeue
|
academic/molequeue: Updated for version 0.9.0.
|
2022-04-24 01:47:09 +07:00 |
|
mpb
|
academic/mpb: Remove .la files.
|
2022-03-08 09:44:29 +07:00 |
|
mrbayes
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
mumsa
|
academic/mumsa: Added (A tool to assess MSA quality)
|
2022-09-25 13:59:42 +07:00 |
|
muscle
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
muscle5
|
academic/muscle5: Added (MUSCLE 5: Next-generation MUSCLE)
|
2022-10-15 10:47:28 +07:00 |
|
ncbi-blast
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
ncbi-blast+
|
academic/ncbi-blast+: Updated for version 2.13.0.
|
2022-09-04 14:40:01 +01:00 |
|
ncbi-rmblastn
|
academic/ncbi-rmblastn: Allow ARCH=i586 in environment.
|
2022-03-20 20:45:13 +07:00 |
|
nco
|
academic/nco: Updated for version 5.1.4.
|
2023-01-14 08:50:01 +07:00 |
|
ncview
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
ngspice
|
academic/ngspice: Updated for version 39.
|
2023-02-25 08:52:03 +07:00 |
|
novocraft
|
academic/novocraft: files update.
|
2021-10-16 00:19:04 +07:00 |
|
NWChem
|
academic/NWChem: Added (High-Performance Computational Chemistry)
|
2022-12-10 07:43:12 +07:00 |
|
octave
|
academic/octave: Updated for version 7.3.0
|
2022-11-12 22:33:22 +07:00 |
|
openboard
|
academic/openboard: Fix build with newer ffmpeg.
|
2022-10-13 10:19:15 +07:00 |
|
OpenFOAM
|
academic/OpenFOAM: Updated for version 10.
|
2022-07-29 22:50:17 +07:00 |
|
OpenMM
|
academic/OpenMM: Fix github tarball handling.
|
2022-11-05 21:15:16 +07:00 |
|
OpenVSP
|
academic/OpenVSP: Moved from graphics. Updated for version 3.31.1.
|
2023-01-21 10:22:03 +07:00 |
|
pal2nal
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
paml
|
academic/paml: Remove stray symlink.
|
2022-10-20 23:32:13 +07:00 |
|
pamlX
|
academic/pamlX: Rebuild for paml update.
|
2022-10-15 10:47:28 +07:00 |
|
papi
|
academic/papi: Updated for version 6.0.0.1.
|
2022-02-27 22:29:06 -06:00 |
|
pari
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
parmetis
|
academic/parmetis: Change i486 to i586
|
2022-06-07 02:23:04 -04:00 |
|
patsy
|
academic/patsy: Fix deps.
|
2022-11-12 22:33:12 +07:00 |
|
pcalc
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
pcb
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
penaltymodel
|
academic/penaltymodel: Added (penalty model solver).
|
2022-11-12 10:49:57 +07:00 |
|
perlprimer
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
petsc
|
academic/petsc: Fix deps.
|
2022-11-12 22:33:16 +07:00 |
|
PhyML
|
academic/PhyML: Updated for version 3.3.20220408.
|
2022-09-04 13:49:57 +01:00 |
|
pianobooster
|
academic/pianobooster: Update email address.
|
2022-06-08 12:25:51 -04:00 |
|
plasmidomics
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
plus42
|
academic/plus42: Updated for version 1.0.15.
|
2023-01-14 08:50:07 +07:00 |
|
pomoxis
|
academic/pomoxis: Added (bioinformatics tools for nanopore research)
|
2023-03-18 09:50:22 +07:00 |
|
prank-msa
|
academic/prank-msa: Added (probabilistic multiple alignment program)
|
2022-09-08 22:18:25 +01:00 |
|
primer3
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
pspp
|
academic/pspp: Updated for version 1.6.2.
|
2023-03-04 07:16:37 +07:00 |
|
pulseview
|
academic/pulseview: Updated for version 20220225_4efbe9b.
|
2022-02-27 22:29:06 -06:00 |
|
PyAMG
|
academic/PyAMG: Fix deps.
|
2022-11-12 22:33:11 +07:00 |
|
pyCRAC
|
academic/pyCRAC: Fix deps.
|
2022-11-12 22:33:16 +07:00 |
|
pyfits
|
academic/pyfits: Fix deps.
|
2022-11-12 22:33:13 +07:00 |
|
pysam
|
academic/pysam: upgraded to version 0.20.0
|
2022-11-24 22:15:19 +07:00 |
|
python2-kiwisolver
|
academic/python2-kiwisolver: Added (Cassowary algorithm)
|
2022-11-05 21:15:10 +07:00 |
|
python2-scipy
|
academic/python2-scipy: Added (math, science, & engineering py2 lib)
|
2022-11-05 21:15:09 +07:00 |
|
python3-ase
|
academic/python3-ase: Added (Atomic Simulation Environment (ASE))
|
2022-12-10 07:43:12 +07:00 |
|
python3-scipy
|
academic/python3-scipy: Added (py3 math, science, and engineering)
|
2022-11-05 21:15:10 +07:00 |
|
qalculate-gtk
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
qcl
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
qhull
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
qrupdate
|
academic/qrupdate: Change i486 to i586
|
2022-06-07 02:23:04 -04:00 |
|
qucs
|
academic/qucs: Align to template.
|
2022-03-26 11:46:45 +13:00 |
|
qucs-s
|
academic/qucs-s: Added (circuit simulator)
|
2023-03-25 10:01:48 +07:00 |
|
R
|
academic/R: Updated for version 4.2.2.
|
2022-11-12 22:33:08 +07:00 |
|
ramulator
|
academic/ramulator: Fix github tarball handling.
|
2022-11-26 09:11:46 +07:00 |
|
RAxML
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
rbio
|
academic/rbio: Change i486 to i586
|
2022-06-07 02:23:04 -04:00 |
|
reduce-algebra
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
RepeatMasker
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
root
|
academic/root: Fix permissions on README and subdirs
|
2022-11-20 08:51:29 +07:00 |
|
rpy2
|
academic/rpy2: upgraded to version 3.5.6
|
2022-11-24 22:14:51 +07:00 |
|
sage
|
academic/sage: Updated for version 9.4
|
2022-01-17 09:00:27 +07:00 |
|
sage-bin
|
academic/sage-bin: Fix .info.
|
2022-05-28 09:11:22 +07:00 |
|
samtools
|
academic/samtools: Ugrade to version 1.16.1
|
2022-10-15 09:25:55 +07:00 |
|
samtools-legacy
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
scidavis
|
academic/scidavis: Updated for version 2.9.0.
|
2022-06-18 09:09:57 +07:00 |
|
scilab
|
various: Use zulu jdk builds for REQUIRES.
|
2022-03-03 15:56:51 +07:00 |
|
seaview
|
academic/seaview: Updated for version 5.0.5.
|
2022-09-04 14:49:33 +01:00 |
|
seqkit
|
academic/seqkit: Updated for version 2.2.0.
|
2022-08-06 20:16:11 +07:00 |
|
SeqMonk
|
academic/SeqMonk: Updated for version 1.48.1.
|
2022-08-06 20:16:13 +07:00 |
|
sequence-analysis
|
academic/sequence-analysis: Use zulu-openjdk11.
|
2022-03-03 15:56:49 +07:00 |
|
Shark
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
sigrok-cli
|
academic/sigrok-cli: Updated for version 20220222_525f481.
|
2022-03-01 19:35:46 +07:00 |
|
SimEng
|
academic/SimEng: Fix github tarball handling.
|
2022-11-26 09:11:46 +07:00 |
|
siril
|
academic/siril: Fix VERSION.
|
2022-03-12 11:36:35 +13:00 |
|
smath-studio
|
academic/smath-studio: Updated for version 1.0.8348
|
2022-12-03 11:46:53 +07:00 |
|
snpEff
|
academic/snpEff: Build cleanup.
|
2022-08-13 10:40:38 +07:00 |
|
solfege
|
academic/solfege: Change i486 to i586
|
2022-06-07 02:23:04 -04:00 |
|
spades
|
academic/spades: Updated for version 3.15.4.
|
2022-08-06 20:16:13 +07:00 |
|
speedcrunch
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
spiceopus
|
academic/spiceopus: Change i486 to i586
|
2022-06-07 02:23:05 -04:00 |
|
spidey
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
spqr
|
academic/spqr: Change i486 to i586
|
2022-06-07 02:23:05 -04:00 |
|
squizz
|
academic/squizz: Remove .la files.
|
2022-03-08 09:44:29 +07:00 |
|
staden
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
STAR
|
academic/STAR: ugraded to version 2.7.10b
|
2022-11-24 22:14:26 +07:00 |
|
stellarium
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
stellarsolver
|
academic/stellarsolver: Added (Astrometric Plate Solver)
|
2022-08-20 10:06:38 +07:00 |
|
stringtie
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
SU2
|
academic/SU2: Mark as 64-bit only.
|
2022-03-26 01:20:12 +07:00 |
|
suitesparse
|
academic/suitesparse: Updated for version 5.11.0
|
2022-04-09 15:46:03 +07:00 |
|
suitesparseconfig
|
academic/suitesparseconfig: Change i486 to i586
|
2022-06-07 02:23:05 -04:00 |
|
sundials
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
sword
|
academic/sword: Updated for version 1.9.0.
|
2022-04-16 12:12:42 +07:00 |
|
sword-data-kjv
|
academic/sword-data-kjv: Updated for version 1.9.0_1.
|
2022-04-16 12:12:42 +07:00 |
|
t_coffee
|
academic/t_coffee: Updated for version 13.45.58.c355d11.
|
2022-03-01 19:35:46 +07:00 |
|
tabix-legacy
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
tiemu
|
academic/tiemu: New maintainer.
|
2023-02-25 09:18:10 +07:00 |
|
tilem
|
academic/tilem: Fix for gcc >= 10.x.
|
2022-03-01 19:35:46 +07:00 |
|
tilem2
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
tkgate
|
academic/tkgate: Change i486 to i586
|
2022-06-07 02:23:05 -04:00 |
|
topdraw
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
tophat
|
academic/tophat: Use -std=c++14.
|
2022-03-03 09:38:11 +00:00 |
|
treebest-ensembl
|
academic/treebest-ensembl: Wrap README at 72 columns.
|
2022-03-12 14:40:15 -05:00 |
|
TreeGraph
|
academic/TreeGraph: Use zulu-openjdk11.
|
2022-03-03 15:56:48 +07:00 |
|
treeviewx
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
trfind
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
trimmomatic
|
academic/trimmomatic: Use zulu-openjdk11.
|
2022-03-03 15:56:49 +07:00 |
|
tuxmath
|
academic/tuxmath: Rename blits. Remove dupe lan player.
|
2022-03-04 09:46:12 +00:00 |
|
tuxtype2
|
academic/tuxtype2: Change i486 to i586
|
2022-06-07 02:23:05 -04:00 |
|
ucsc-blat
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
ugene
|
academic/ugene: Updated for version 44.0.
|
2022-09-08 08:11:03 +01:00 |
|
umfpack
|
academic/umfpack: Change i486 to i586
|
2022-06-07 02:23:05 -04:00 |
|
units
|
academic/units: Updated for version 2.22
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2022-09-10 15:19:08 +07:00 |
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vCAPS_coevolution
|
academic/vCAPS_coevolution: Added (Coevolution Analysis)
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2022-09-09 03:10:09 +01:00 |
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vcftools
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All: Support $PRINT_PACKAGE_NAME env var
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2021-07-17 21:55:09 +02:00 |
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velocyto
|
academic/velocyto: Added (library for the analysis of RNA velocity)
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2023-03-18 09:50:22 +07:00 |
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verilator
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academic/verilator: Make slack-desc ASCII.
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2022-03-17 12:38:15 -04:00 |
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verilog
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academic/verilog: Fix download url.
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2022-11-05 12:56:05 +07:00 |
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veusz
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academic/veusz: Fix deps.
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2022-11-12 22:33:18 +07:00 |
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ViennaRNA
|
academic/ViennaRNA: Fix build.
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2023-03-11 21:19:45 +07:00 |
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voro++
|
academic/voro++: Added (A 3D Voronoi cell software library)
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2022-10-15 10:47:38 +07:00 |
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wehi-cellsymphony
|
academic/wehi-cellsymphony: Use zulu-openjdk11.
|
2022-03-03 15:56:49 +07:00 |
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wehi-deid
|
academic/wehi-deid: Use zulu-openjdk11.
|
2022-03-03 15:56:49 +07:00 |
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wehi-hackit
|
academic/wehi-hackit: Use zulu-openjdk11.
|
2022-03-03 15:56:49 +07:00 |
|
wehi-weasel
|
academic/wehi-weasel: Use zulu-openjdk11.
|
2022-03-03 15:56:48 +07:00 |
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WEVOTE
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
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wmcalc
|
academic/wmcalc: Fix doinst.sh.
|
2022-12-31 09:14:48 +07:00 |
|
WolframEngine
|
academic/WolframEngine: Updated for version 13.2.0.
|
2023-03-11 21:15:48 +07:00 |
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WordNet
|
academic/WordNet: Change i486 to i586
|
2022-06-07 02:23:02 -04:00 |
|
wxMaxima
|
academic/wxMaxima: Fix github tarball handling.
|
2022-03-01 19:35:44 +07:00 |
|
x48
|
academic/x48: Added (HP48 Calculator emulator)
|
2022-04-30 13:51:49 +07:00 |
|
xcircuit
|
academic/xcircuit: Updated for version 3.10.30. New maintainer.
|
2023-03-25 10:01:45 +07:00 |
|
xephem
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
xflr5
|
academic/xflr5: Updated for version 6.54.
|
2022-04-16 12:12:52 +07:00 |
|
xfoil
|
academic/xfoil: Updated the patch to fix build.
|
2021-08-14 21:18:00 +07:00 |
|
xiphos
|
academic/xiphos: Update DEP.
|
2023-02-25 08:54:00 +07:00 |
|
xoscope
|
academic/xoscope: Change i486 to i586
|
2022-06-07 02:23:05 -04:00 |
|
xsimd
|
academic/xsimd: Updated for version 10.0.0.
|
2022-12-03 09:09:23 +07:00 |
|
yices2
|
academic/yices2: Added (Satisfiability modulo theories solver).
|
2022-11-05 12:46:15 +07:00 |
|
z3
|
academic/z3: Updated for version 4.11.2.
|
2022-10-08 09:12:54 +07:00 |
|
ZeGrapher
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
zotero
|
academic/zotero: Updated for version 6.0.22.
|
2023-03-04 08:06:31 +07:00 |
f7ea463738