| .. |
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abella
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academic/abella: Fix README.
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2020-10-17 09:36:38 +07:00 |
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abntex
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aenig4
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academic/aenig4: Fix README.
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2020-10-17 09:36:38 +07:00 |
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aline
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aliview
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academic/aliview: Updated for version 1.26.
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2019-08-03 06:46:55 +07:00 |
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amd
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academic/amd: BUILD bump for SuiteSparse 5.8.1.
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2021-01-17 08:45:04 +07:00 |
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amplicon
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amplifx
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academic/amplifx: Change URLs.
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2020-09-15 08:28:29 +07:00 |
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antiprism
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academic/antiprism: Added -fpermissive to the CXXFLAGS.
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2021-04-17 23:08:20 -05:00 |
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archaeopteryx
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aris
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academic/aris: Updated for version 2. New maintainer.
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2021-02-14 06:27:53 +07:00 |
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arka
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armadillo
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academic/armadillo: Fix README.
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2020-10-17 09:36:39 +07:00 |
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arpack
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arpack-ng
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academic/arpack-ng: Updated for version 3.8.0.
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2021-01-17 08:45:03 +07:00 |
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artha
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academic/artha: Updated for version 1.0.5.
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2021-04-17 23:09:19 -05:00 |
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avl
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avogadro
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academic/avogadro: Fix README.
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2020-10-17 09:36:40 +07:00 |
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bcftools
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academic/bcftools: Updated for version 1.12.
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2021-03-27 10:23:16 +07:00 |
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bedGraphToBigWig
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bedtools
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academic/bedtools: Updated for version 2.29.2.
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2020-09-15 08:30:05 +07:00 |
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biblesync
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academic/biblesync: Update README.
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2020-06-28 08:16:52 +07:00 |
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bibletime
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academic/bibletime: Do not use hardcoded path.
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2021-01-17 08:44:52 +07:00 |
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bibus
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academic/bibus: Fix README.
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2020-10-17 09:36:40 +07:00 |
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biopython
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academic/biopython: Added (Python tools for biological computation).
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2019-08-03 06:41:13 +07:00 |
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boinc
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academic/boinc: Updated for version 7.16.16
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2021-04-10 17:04:57 +07:00 |
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bowtie
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bowtie2
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academic/bowtie2: Updated for version 2.4.2.
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2020-10-10 10:18:46 +07:00 |
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bowtie2-legacy
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academic/bowtie2-legacy: Fixed PRGNAM in build script.
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2020-01-03 02:06:16 -06:00 |
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bpp-core
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bpp-phyl
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bpp-phyl-omics
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bpp-popgen
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bpp-seq
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bpp-seq-omics
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bpp1.9-numcalc
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academic/bpp1.9-numcalc: Added (Bio++ 1.9 NumCalc Library)
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2020-10-10 10:18:47 +07:00 |
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bpp1.9-phyl
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academic/bpp1.9-phyl: Fix slack-desc.
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2020-10-17 09:37:28 +07:00 |
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bpp1.9-seq
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academic/bpp1.9-seq: Added (Bio++ 1.9 Seq Library)
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2020-10-10 10:18:47 +07:00 |
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bpp1.9-utils
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academic/bpp1.9-utils: Added (Bio++ 1.9 Utils Library)
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2020-10-10 10:18:47 +07:00 |
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bppsuite
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btf
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academic/btf: BUILD bump for SuiteSparse 5.8.1.
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2021-01-17 08:45:05 +07:00 |
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bwa
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cadabra2
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academic/cadabra2: Updated for version 2.3.6.3.
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2021-01-22 23:42:13 +07:00 |
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CAFS_divergence
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academic/CAFS_divergence: Fix README.
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2020-10-17 09:36:33 +07:00 |
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calc
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sbo/scripts: Email changes
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2020-01-18 12:25:16 +07:00 |
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calcoo
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academic/calcoo: Fix README.
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2020-10-17 09:36:41 +07:00 |
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camd
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academic/camd: BUILD bump for SuiteSparse 5.8.1.
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2021-01-17 08:45:04 +07:00 |
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cap3
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academic/cap3: Fix README.
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2020-10-17 09:36:41 +07:00 |
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CAPS_coevolution
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cblas
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academic/cblas: Updated for version 3.9.1.
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2021-04-17 11:47:42 +07:00 |
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ccolamd
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academic/ccolamd: BUILD bump for SuiteSparse 5.8.1.
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2021-01-17 08:45:04 +07:00 |
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cdo
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academic/cdo: Updated for version 1.9.10.
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2021-02-14 06:28:01 +07:00 |
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celestia
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chartgeany
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academic/chartgeany: Added (market analysis tool)
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2020-05-10 08:37:02 +07:00 |
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chemtool
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cholmod
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academic/cholmod: Updated for version 3.0.14.
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2021-01-17 08:45:06 +07:00 |
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cistrome-CEAS
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academic/cistrome-CEAS: updated download link and misc cleanups
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2020-01-12 08:47:59 +07:00 |
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cistrome-conductGO
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cistrome-extra
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cistrome-MACS
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academic/cistrome-MACS: updated homepage and misc cleanups
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2020-01-12 08:48:00 +07:00 |
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cistrome-mdseqpos
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clark-ugene
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academic/clark-ugene: Fixed PRGNAM in build script.
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2020-01-03 02:06:16 -06:00 |
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cld2
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academic/cld2: Fix README.
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2020-10-17 09:36:42 +07:00 |
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clustalo
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clustalw
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clustalx
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colamd
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academic/colamd: BUILD bump for SuiteSparse 5.8.1.
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2021-01-17 08:45:04 +07:00 |
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colin
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academic/colin: Various fixes. Rebuilt.
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2020-11-14 17:16:40 +07:00 |
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convertall
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academic/convertall: Updated for version 0.8.0.
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2021-02-21 00:05:02 +07:00 |
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copasi
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academic/copasi: Updated for version 4.28.226.
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2020-06-20 07:59:28 +07:00 |
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coq
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academic/coq: Updated for version 8.9.0.
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2020-01-18 07:49:05 +07:00 |
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cryptominisat
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academic/cryptominisat: Updated for version 5.7.1.
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2020-05-10 08:36:56 +07:00 |
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csparse
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academic/csparse: BUILD bump for SuiteSparse 5.8.1.
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2021-01-17 08:45:05 +07:00 |
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cufflinks
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cutadapt
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cvc4
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academic/cvc4: Updated for version 1.8.
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2020-09-05 08:26:44 +07:00 |
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cxsparse
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academic/cxsparse: BUILD bump for SuiteSparse 5.8.1.
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2021-01-17 08:45:05 +07:00 |
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dakota
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academic/dakota: Fix README.
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2020-10-17 09:36:43 +07:00 |
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Data2FCS
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datamash
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academic/datamash: Added (Basic numeric, textual & statistical ops)
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2020-12-12 07:09:22 +07:00 |
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DendroPy
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academic/DendroPy: Added (A Phylogenetic Computing Library).
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2019-08-02 00:18:53 +07:00 |
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diamond
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academic/diamond: Updated for version 0.9.36.
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2020-09-15 08:30:45 +07:00 |
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drawtiming
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ds9
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academic/ds9: Updated for version 8.2.1.
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2021-04-02 10:31:08 +07:00 |
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easy_spice
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ed-v6
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academic/ed-v6: Fix README.
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2020-10-17 09:36:43 +07:00 |
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edsim51di
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academic/edsim51di: Update DEP.
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2019-05-30 09:57:35 +07:00 |
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EMBASSY
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EMBOSS
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engauge
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academic/engauge: Fix README.
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2020-10-17 09:36:44 +07:00 |
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ent
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eprover
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academic/eprover: Updated for version 2.5.
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2020-09-05 08:26:44 +07:00 |
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equalx
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academic/equalx: Add .desktop and patch
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2020-01-12 08:47:47 +07:00 |
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ess
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academic/ess: Fix README.
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2020-10-17 09:36:44 +07:00 |
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evopedia_qt
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academic/evopedia_qt: Use proper github URL.
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2020-02-24 06:10:05 +07:00 |
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exonerate
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extrema
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fann
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academic/fann: Fix README.
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2020-10-17 09:36:44 +07:00 |
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fastqc
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academic/fastqc: Updated for version 0.11.9.
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2020-02-08 02:17:03 +07:00 |
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FCSalyzer
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academic/FCSalyzer: Updated for version 0.9.18_alpha.
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2020-01-12 08:48:01 +07:00 |
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fet
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academic/fet: Updated for version 5.49.1.
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2021-03-20 11:00:42 +07:00 |
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fiji
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academic/fiji: Updated for version 20200902_2101.
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2020-09-15 08:31:23 +07:00 |
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finchtv
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fityk
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academic/fityk: Fix README.
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2020-10-17 09:36:44 +07:00 |
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flann
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academic/flann: Fix README.
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2020-10-17 09:36:45 +07:00 |
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flashqard
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flexbar
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academic/flexbar: Updated for version 3.5.0.
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2019-05-11 07:14:20 +07:00 |
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free42
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academic/free42: Fix README.
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2020-10-17 09:36:45 +07:00 |
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FreeFem
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academic/FreeFem: Fix README.
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2020-10-17 09:36:33 +07:00 |
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g3data
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galculator
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academic/galculator: Fix build on current.
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2021-01-24 00:00:48 +07:00 |
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gaw3
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Gblocks
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gchemutils
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gcompris
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academic/gcompris: Fix README.
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2020-10-17 09:36:45 +07:00 |
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gcompris-qt
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academic/gcompris-qt: Updated for version 1.1.
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2021-03-27 09:15:33 +07:00 |
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geda-gaf
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academic/geda-gaf: Added the new dependency guile1.8.
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2021-04-17 23:24:31 -05:00 |
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gelemental
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academic/gelemental: Patch for the newer gcc.
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2021-04-17 23:24:32 -05:00 |
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geneconv
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genius
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academic/genius: Added the new dependency vte2.
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2021-04-17 23:24:32 -05:00 |
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genometools
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academic/genometools: Disabled some warnings-as-errors.
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2021-04-17 23:24:32 -05:00 |
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genpak
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GeoGebra
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academic/GeoGebra: Update DEP.
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2019-05-30 09:56:51 +07:00 |
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geomview
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academic/geomview: New maintainer.
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2020-02-15 09:51:07 +07:00 |
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gerbv
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academic/gerbv: Fix README.
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2020-10-17 09:36:46 +07:00 |
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getdp
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academic/getdp: Fix README, slack-desc.
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2020-10-17 09:36:49 +07:00 |
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ggobi
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academic/ggobi: Fix README.
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2020-10-17 09:37:32 +07:00 |
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ghemical
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glpk
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gmsh
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academic/gmsh: Fix README, slack-desc.
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2020-10-17 09:36:49 +07:00 |
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gnucap
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academic/gnucap: Fix README.
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2020-10-17 09:37:32 +07:00 |
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gp2fasta
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gpredict
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grace
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academic/grace: Fix README.
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2020-10-17 09:37:32 +07:00 |
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gresistor
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gretl
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gri
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academic/gri: Update HOMEPAGE.
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2020-04-10 00:21:09 +07:00 |
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Gridcoin-Research
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academic/Gridcoin-Research: Patched for boost >= 1.73.0.
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2021-04-17 22:53:30 -05:00 |
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grpn
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academic/grpn: Fix README.
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2020-10-17 09:37:33 +07:00 |
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gspiceui
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academic/gspiceui: Updated for version 1.2.36.
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2019-08-17 20:07:20 +07:00 |
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gtkwave
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academic/gtkwave: Fix README.
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2020-10-17 09:37:33 +07:00 |
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gtypist
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gwyddion
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academic/gwyddion: Updated for version 2.58.
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2021-02-14 06:28:01 +07:00 |
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h5utils
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academic/h5utils: Fixed the md5sum.
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2020-04-04 09:50:02 +07:00 |
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harminv
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academic/harminv: Added (harmonic inversion from a time series).
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2019-07-08 05:50:43 +07:00 |
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HMMER
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academic/HMMER: Updated for version 3.3.1.
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2020-09-15 08:26:08 +07:00 |
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hyphy
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IGV
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academic/IGV: Added (Integrative Genomics Viewer)
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2020-11-22 01:14:24 +07:00 |
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io_lib
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academic/io_lib: Updated for version 1.14.13.
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2020-09-15 08:34:19 +07:00 |
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irsim
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isoelectric-point
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iTest
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itex2mml
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ITK
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academic/ITK: Downgrade and add GCC 10 support.
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2021-04-18 02:00:20 -05:00 |
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jalview
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academic/jalview: Updated for version 2.11.1.0.
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2020-09-15 08:35:34 +07:00 |
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jellyfish_k-mer
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academic/jellyfish_k-mer: Fixed PRGNAM in build script.
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2020-01-03 02:06:16 -06:00 |
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jpicedt
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academic/jpicedt: Fix README.
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2020-10-17 09:37:33 +07:00 |
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jugglinglab
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karma
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kiwisolver
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academic/kiwisolver: Fix README.
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2020-10-17 09:37:33 +07:00 |
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klavaro
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academic/klavaro: Updated for version 3.03.
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2019-11-16 20:27:48 +07:00 |
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klu
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academic/klu: BUILD bump for SuiteSparse 5.8.1.
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2021-01-17 08:45:06 +07:00 |
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knime
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kraken
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academic/kraken: Updated for version 1.1.1.
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2019-08-03 07:04:42 +07:00 |
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Kst
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academic/Kst: Fix README.
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2020-10-17 09:36:34 +07:00 |
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ktikz
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kurso
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labplot2
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ladr
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lalnview
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academic/lalnview: Update script.
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2020-09-19 01:01:15 +07:00 |
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lapack95
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academic/lapack95: Convert script to utf-8.
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2020-10-17 09:36:35 +07:00 |
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lapacke
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academic/lapacke: Updated for version 3.9.1.
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2021-04-17 11:47:43 +07:00 |
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latex2html
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academic/latex2html: Updated for version 2020.
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2020-05-16 08:44:12 +07:00 |
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ldl
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academic/ldl: BUILD bump for SuiteSparse 5.8.1.
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2021-01-17 08:45:05 +07:00 |
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libghemical
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link-grammar
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academic/link-grammar: Fix README.
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2020-10-17 09:37:35 +07:00 |
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locarna
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academic/locarna: Updated for version 1.9.2.3.
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2019-09-08 07:30:07 +07:00 |
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loggerpro
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lpsolve
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mafft
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academic/mafft: Updated for version 7.471.
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2020-09-15 08:37:09 +07:00 |
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magic
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mathics
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mathomatic
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academic/mathomatic: Fix README.
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2020-10-17 09:37:35 +07:00 |
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matio
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maxima
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academic/maxima: Updated for version 5.44.0.
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2021-03-20 11:00:46 +07:00 |
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meep
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academic/meep: Updated for version 1.17.1.
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2021-01-30 09:19:18 +07:00 |
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megax
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academic/megax: Updated for version 10.1.8_1.
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2020-09-15 08:37:49 +07:00 |
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meme-db-gomo
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academic/meme-db-gomo: Added (MEME Suite GOMo databases)
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2020-01-12 08:48:00 +07:00 |
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meme-db-motif
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academic/meme-db-motif: Added (MEME Suite motif databases)
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2020-01-12 08:48:00 +07:00 |
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meme-db-tgene
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academic/meme-db-tgene: Added (MEME Suite T-gene databases)
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2020-01-12 08:48:00 +07:00 |
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meme-suite
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academic/meme-suite: Updated for version 5.1.1.
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2020-09-15 08:39:20 +07:00 |
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mendeleydesktop
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MetaPhlAn2
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academic/MetaPhlAn2: Fix README.
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2020-10-17 09:36:34 +07:00 |
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metis
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mkDSSP
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Mnemosyne
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academic/Mnemosyne: Fix README.
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2020-10-17 09:36:35 +07:00 |
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mpb
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academic/mpb: Updated for version 1.11.1.
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2021-01-30 09:23:19 +07:00 |
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mrbayes
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academic/mrbayes: Updated for version 3.2.7a.
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2019-08-03 07:05:50 +07:00 |
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muscle
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academic/muscle: Update script and added manual page.
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2020-05-22 23:39:23 +07:00 |
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ncbi-blast
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ncbi-blast+
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academic/ncbi-blast+: Updated for version 2.10.1.
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2020-09-15 08:39:58 +07:00 |
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ncbi-rmblastn
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nco
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academic/nco: Updated for version 4.9.7.
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2021-02-14 06:28:00 +07:00 |
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ncview
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ngspice
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academic/ngspice: KiCAD build fixes.
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2021-03-13 09:02:37 +07:00 |
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novocraft
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academic/novocraft: Updated for version 3.09.03.
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2019-08-03 06:20:02 +07:00 |
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octave
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academic/octave: Updated for version 6.2.0.
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2021-04-17 11:47:43 +07:00 |
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OpenFOAM
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academic/OpenFOAM: Fix README.
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2020-10-17 09:36:34 +07:00 |
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pal2nal
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paml
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academic/paml: Updated for version 4.9j.
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2020-09-15 08:40:44 +07:00 |
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pamlX
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academic/pamlX: Update substitution.
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2020-09-15 08:41:31 +07:00 |
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papi
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pari
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academic/pari: Updated for version 2.13.1.
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2021-04-17 11:47:40 +07:00 |
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parmetis
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academic/parmetis: Fix README.
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2020-10-17 09:37:36 +07:00 |
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patsy
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pcalc
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academic/pcalc: Remove empty doinst.sh.
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2020-01-12 08:47:44 +07:00 |
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pcb
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perlprimer
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academic/perlprimer: Updated for version 1.2.4.
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2019-08-03 07:08:27 +07:00 |
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PhyML
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academic/PhyMLR: Updated for version 3.3.20200621.
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2020-09-15 08:26:50 +07:00 |
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pianobooster
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academic/pianobooster: Fix README.
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2020-10-17 09:37:36 +07:00 |
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plasmidomics
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prank-msa
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primer3
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academic/primer3: Respect our CFLAGS, added -fpermissive.
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2021-04-17 23:54:36 -05:00 |
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pspp
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pulseview
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academic/pulseview: Updated for version 20210103_d023660.
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2021-04-17 23:54:36 -05:00 |
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PyAMG
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academic/PyAMG: Fix README.
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2020-10-17 09:36:37 +07:00 |
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pyCRAC
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academic/pyCRAC: Updated for version 1.5.0.
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2021-02-27 08:24:29 +07:00 |
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pyfits
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pysam
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academic/pysam: Updated for version 0.16.0.1.
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2020-10-10 10:18:46 +07:00 |
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qalculate-gtk
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academic/qalculate-gtk: Updated to version 3.10.0
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2020-05-16 08:44:19 +07:00 |
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qcl
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qhull
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qrupdate
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academic/qrupdate: Workaround to build with gcc >= 10.x.
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2021-04-17 23:56:17 -05:00 |
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QtiPlot
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qucs
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academic/qucs: Updated for version 0.0.19.
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2020-01-12 11:17:50 +07:00 |
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R
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academic/R: Updated for version 4.0.0.
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2020-06-03 15:09:15 +07:00 |
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RAxML
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academic/RAxML: Added (Randomized Axelerated Maximum Likelihood).
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2019-08-02 00:45:41 +07:00 |
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rbio
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academic/rbio: BUILD bump for SuiteSparse 5.8.1.
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2021-01-17 08:45:05 +07:00 |
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reduce-algebra
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academic/reduce-algebra: Updated for version 20201007svn5424.
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2020-10-10 10:18:44 +07:00 |
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RepeatMasker
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academic/RepeatMasker: Updated for version 4.1.1.
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2020-09-15 08:27:40 +07:00 |
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root
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academic/root: Updated for version 6.10.02.
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2021-04-17 23:57:12 -05:00 |
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rpy2
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academic/rpy2: Updated for version 3.4.3.
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2021-04-02 09:17:41 +07:00 |
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sage
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academic/sage: Updated for version 9.2.
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2021-04-17 23:57:58 -05:00 |
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sage-bin
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samtools
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academic/samtools: Updated for version 1.12.
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2021-03-27 10:23:15 +07:00 |
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samtools-legacy
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academic/samtools-legacy: Fixed PRGNAM in build script.
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2020-01-03 02:06:16 -06:00 |
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scidavis
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academic/scidavis: Updated for version 1.26.
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2019-12-19 22:47:21 +07:00 |
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scilab
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academic/scilab: Fix md5sum.
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2020-06-28 08:16:48 +07:00 |
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scipy
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academic/scipy: Fix README.
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2020-10-17 09:37:36 +07:00 |
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scipy3
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academic/scipy3: Updated for version 1.5.4.
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2021-04-17 23:58:00 -05:00 |
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seaview
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academic/seaview: Updated for version 5.0.4.
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2020-09-15 08:42:25 +07:00 |
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seqkit
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academic/seqkit: Updated for version 0.13.2.
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2020-09-15 08:43:09 +07:00 |
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SeqMonk
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academic/SeqMonk: Added (A Mapped Sequence Analysis tool)
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2020-10-31 11:15:27 +07:00 |
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sequence-analysis
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Shark
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academic/Shark: Updated for version 4.0.1.
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2021-04-18 02:00:20 -05:00 |
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sigrok-cli
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siril
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academic/siril: Fix README.
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2020-10-17 09:37:36 +07:00 |
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slatec
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smath-studio
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snpEff
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solfege
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spades
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academic/spades: Updated for version 3.14.1.
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2020-09-15 08:43:44 +07:00 |
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speedcrunch
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spiceopus
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spidey
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spqr
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academic/spqr: Updated for SuiteSparse 5.8.1.
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2021-01-17 08:45:06 +07:00 |
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squizz
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staden
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STAR
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academic/STAR: Updated for version 2.7.8a.
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2021-03-06 11:11:55 +07:00 |
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stellarium
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academic/stellarium: Updated for version 0.20.4.
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2021-01-15 19:33:43 +00:00 |
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stringtie
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academic/stringtie: Remove template comment from script.
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2020-01-12 08:47:38 +07:00 |
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SU2
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academic/SU2: Fix slack-desc.
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2020-01-12 08:47:29 +07:00 |
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suitesparse
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academic/suitesparse: Update README
|
2021-01-17 08:45:02 +07:00 |
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suitesparseconfig
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academic/suitesparseconfig: Updated for version 5.8.1.
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2021-01-17 08:45:04 +07:00 |
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sundials
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academic/sundials: Fix download link.
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2021-04-17 11:47:50 +07:00 |
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sword
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academic/sword: Update README.
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2020-06-28 08:16:51 +07:00 |
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sword-data-kjv
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academic/sword-data-kjv: Updated for version 1.8.1_1.
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2021-04-10 17:04:36 +07:00 |
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t_coffee
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academic/t_coffee: Updated for version 13.41.0_git28bdc39.
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2020-01-12 08:48:00 +07:00 |
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tabix-legacy
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academic/tabix-legacy: Fixed PRGNAM in build script.
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2020-01-03 02:06:16 -06:00 |
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tiemu
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academic/tiemu: Fix README.
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2020-10-17 09:37:37 +07:00 |
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tilem
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tilem2
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tkgate
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topdraw
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tophat
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academic/tophat: Patched for gcc >= 6.x.
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2021-04-18 00:02:32 -05:00 |
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treebest-ensembl
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academic/treebest-ensembl: Added (Tree Building).
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2020-01-11 20:58:11 +07:00 |
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TreeGraph
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academic/TreeGraph: Updated for version 2.15.0_887_beta.
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2020-01-12 08:48:01 +07:00 |
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treerecs
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academic/treerecs: Fix README, install doinst.
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2020-10-17 09:36:51 +07:00 |
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treeviewx
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academic/treeviewx: Updated for version 1.18.4.2171_ac2afe5f8.
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2020-01-08 05:04:50 +07:00 |
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trfind
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academic/trfind: Updated for version 4.09.1.
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2020-09-16 07:33:44 +07:00 |
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trimmomatic
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academic/trimmomatic: Updated for version 0.39.
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2020-09-16 07:34:27 +07:00 |
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tuxmath
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academic/tuxmath: Fix README.
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2020-10-17 09:37:38 +07:00 |
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tuxtype2
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ucsc-blat
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ugene
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academic/ugene: Patch to avoid hardcoding headers location.
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2021-04-18 00:03:07 -05:00 |
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umfpack
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academic/umfpack: Updated for SuiteSparse 5.8.1.
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2021-01-17 08:45:06 +07:00 |
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units
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academic/units: Updated for version 2.20.
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2020-10-03 08:39:32 +07:00 |
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vCAPS_coevolution
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academic/vCAPS_coevolution: Added (Coevolution Analysis)
|
2020-10-10 10:18:48 +07:00 |
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vcftools
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verilator
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academic/verilator: Added (Verilog HDL Simulator).
|
2020-03-20 19:30:05 +07:00 |
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verilog
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academic/verilog: Fix README.
|
2020-10-17 09:37:38 +07:00 |
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veusz
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academic/veusz: Use sip as provided by current.
|
2021-04-18 00:04:04 -05:00 |
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ViennaRNA
|
academic/ViennaRNA: Update DOWNLOAD.
|
2020-12-18 12:41:29 +07:00 |
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wehi-cellsymphony
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wehi-deid
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wehi-hackit
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wehi-weasel
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academic/wehi-weasel: Updated for version 3.7.1.18.
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2020-09-15 08:24:56 +07:00 |
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WEVOTE
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wmcalc
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academic/wmcalc: Fix README.
|
2020-10-17 09:37:38 +07:00 |
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WordNet
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academic/WordNet: Fix README.
|
2020-10-17 09:36:37 +07:00 |
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wxmacmolplt
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wxMaxima
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academic/wxMaxima: Updated for version 21.01.0.
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2021-04-10 17:04:42 +07:00 |
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xcircuit
|
academic/xcircuit: Assume maintainership
|
2020-01-18 12:25:03 +07:00 |
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xephem
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academic/xephem: Fix README.
|
2020-10-17 09:37:38 +07:00 |
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xflr5
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academic/xflr5: Updated for version 6.47.
|
2020-01-26 07:11:20 +07:00 |
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xfoil
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academic/xfoil: Fix README.
|
2020-10-17 09:37:39 +07:00 |
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xiphos
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academic/xiphos: Do not use hardcoded path.
|
2021-01-17 08:44:53 +07:00 |
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xoscope
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Xyce
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academic/Xyce: Fix README.
|
2020-10-17 09:36:37 +07:00 |
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z3
|
academic/z3: Updated for version 4.8.7.
|
2020-01-12 12:36:18 +07:00 |
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ZeGrapher
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zotero
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academic/zotero: Updated for version 5.0.85.
|
2020-04-01 18:56:51 +07:00 |
