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academic/jalview: Updated for version 2.11.1.0.

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Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
This commit is contained in:
Petar Petrov 2020-09-15 08:35:34 +07:00 committed by Willy Sudiarto Raharjo
parent 9579608d99
commit fe7468106d
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GPG key ID: 3F617144D7238786
3 changed files with 9 additions and 42 deletions
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16
academic/jalview/jalview
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@ -1,16 +1,2 @@
#!/bin/sh
# This wrapper script is taken from Arch Linux AUR entry of jalview.
# https://aur.archlinux.org/packages/jalview/
# Maintainer of the PKGBUILD is Stefan Seemayer.
progname="jalview"
mainclass="jalview.bin.Jalview"
basedir="/usr/share/java/$progname"
# build classpath: all jars in $basedir
cp=$( ls $basedir/*.jar | xargs echo | sed "s/ /:/g" );
# run jar
"$JAVA_HOME/bin/java" -cp $cp $mainclass
java -jar /opt/jalview/jalview

27
academic/jalview/jalview.SlackBuild
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@ -2,7 +2,7 @@
# Slackware build script for jalview
# Copyright 2013-2016 Petar Petrov slackalaxy@gmail.com
# Copyright 2013-2020 Petar Petrov slackalaxy@gmail.com
# All rights reserved.
#
# Redistribution and use of this script, with or without modification, is
@ -22,15 +22,14 @@
# OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
# With help from the jalview PKGBUILD at Arch linux AUR:
# https://aur.archlinux.org/packages/jalview/
PRGNAM=jalview
VERSION=${VERSION:-2.10.0b1}
VERSION=${VERSION:-2.11.1.0}
BUILD=${BUILD:-1}
TAG=${TAG:-_SBo}
ARCH=noarch
JAVA=j1.8
CWD=$(pwd)
TMP=${TMP:-/tmp/SBo}
@ -42,27 +41,11 @@ set -e
rm -rf $PKG
mkdir -p $TMP $PKG $OUTPUT
cd $TMP
rm -rf $PRGNAM-$VERSION
tar xvf $CWD/$PRGNAM-$VERSION.tar.gz
cd $PRGNAM-$VERSION
chown -R root:root .
find -L . \
\( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 \
-o -perm 511 \) -exec chmod 755 {} \; -o \
\( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \
-o -perm 440 -o -perm 400 \) -exec chmod 644 {} \;
mkdir -p $PKG/usr/share/java/$PRGNAM
cp -a *.jar $PKG/usr/share/java/$PRGNAM
# The wrapper is from Arch. Thank you!
install -D -m755 $CWD/$PRGNAM-all-$VERSION-$JAVA.jar $PKG/opt/$PRGNAM/$PRGNAM
install -D -m755 $CWD/$PRGNAM $PKG/usr/bin/$PRGNAM
mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION
cp -a \
building.html exampleFeatures.txt LICENSE README_IA \
$PKG/usr/doc/$PRGNAM-$VERSION
cat $CWD/TheJalviewTutorial_screen.pdf > $PKG/usr/doc/$PRGNAM-$VERSION/Tutorial.pdf
cat $CWD/References > $PKG/usr/doc/$PRGNAM-$VERSION/References
cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild

8
academic/jalview/jalview.info
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@ -1,10 +1,8 @@
PRGNAM="jalview"
VERSION="2.10.0b1"
VERSION="2.11.1.0"
HOMEPAGE="http://www.jalview.org/"
DOWNLOAD="http://sourceforge.net/projects/sboppetrov/files/JalView/2.10/jalview-2.10.0b1.tar.gz \
http://sourceforge.net/projects/sboppetrov/files/JalView/TheJalviewTutorial_screen.pdf"
MD5SUM="fb5b30202210e21647ecc7da5242bab3 \
5e2f8da8f2528049f055263aecd2f8af"
DOWNLOAD="http://www.jalview.org/getdown/release/jalview-all-2.11.1.0-j1.8.jar"
MD5SUM="7f79b598a5bfd25d89adf6fe8c9b98f7"
DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
REQUIRES="jdk"