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academic/ugene: Patch to avoid hardcoding headers location.

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Signed-off-by: Matteo Bernardini <ponce@slackbuilds.org>
This commit is contained in:
Matteo Bernardini 2017-07-26 17:54:50 +02:00 committed by Robby Workman
parent 5b57c6efd3
commit 9ea2c40eee
2 changed files with 27 additions and 0 deletions
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24
academic/ugene/ugene-1.22.0-dont_hardcode_includes.patch Normal file
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@ -0,0 +1,24 @@
diff -up ugene-1.22.0/src/libs_3rdparty/samtools/samtools.pri.dont_hardcode_includes ugene-1.22.0/src/libs_3rdparty/samtools/samtools.pri
--- ugene-1.22.0/src/libs_3rdparty/samtools/samtools.pri.dont_hardcode_includes 2016-03-31 07:21:56.000000000 -0500
+++ ugene-1.22.0/src/libs_3rdparty/samtools/samtools.pri 2016-06-02 17:49:02.383069490 -0500
@@ -3,7 +3,7 @@ UGENE_RELATIVE_DESTDIR = ''
TEMPLATE = lib
CONFIG +=thread debug_and_release staticlib warn_off
-INCLUDEPATH += src src/samtools ../../include /usr/include
+INCLUDEPATH += src src/samtools ../../include
win32 : INCLUDEPATH += src/samtools/win32
DEFINES+="_FILE_OFFSET_BITS=64" _LARGEFILE64_SOURCE _USE_KNETFILE
win32 : DEFINES += _USE_MATH_DEFINES "inline=__inline" "__func__=__FUNCTION__" "R_OK=4" "atoll=_atoi64" "alloca=_alloca"
diff -up ugene-1.22.0/src/plugins_3rdparty/variants/variants.pri.dont_hardcode_includes ugene-1.22.0/src/plugins_3rdparty/variants/variants.pri
--- ugene-1.22.0/src/plugins_3rdparty/variants/variants.pri.dont_hardcode_includes 2016-03-31 07:22:09.000000000 -0500
+++ ugene-1.22.0/src/plugins_3rdparty/variants/variants.pri 2016-06-02 20:26:35.265356432 -0500
@@ -20,7 +20,7 @@ use_bundled_zlib() {
win32 : LIBS += -lwsock32
-INCLUDEPATH += src ../../include /usr/include
+INCLUDEPATH += src ../../include
INCLUDEPATH += ../../libs_3rdparty/samtools/src/samtools
INCLUDEPATH += ../../libs_3rdparty/samtools/src
INCLUDEPATH += ../../libs_3rdparty/samtools/src/samtools/bcftools

3
academic/ugene/ugene.SlackBuild
View file

@ -73,6 +73,9 @@ find -L . \
\( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \
-o -perm 440 -o -perm 400 \) -exec chmod 644 {} \;
# Thanks fedora
patch -p1 < $CWD/ugene-1.22.0-dont_hardcode_includes.patch
# Fix libraries and man pages paths
sed -i "s:/lib:/lib${LIBDIRSUFFIX}:g" src/ugene_globals.pri
sed -i "s:/share/man:/man:g" src/ugene_globals.pri