| .. |
|
abntex
|
|
|
|
aenig4
|
academic/aenig4: Updated for version 1.04.
|
2018-11-03 07:46:38 +07:00 |
|
aline
|
|
|
|
aliview
|
academic/aliview: Updated for version 1.23.
|
2018-06-17 22:44:42 +01:00 |
|
amd
|
academic/amd: BUILD bump for SuiteSparse 5.2.0.
|
2018-03-24 06:50:38 +07:00 |
|
amplicon
|
|
|
|
amplifx
|
|
|
|
antiprism
|
|
|
|
archaeopteryx
|
academic/archaeopteryx: Updated for version 0.9920b.
|
2017-10-11 06:19:45 +07:00 |
|
aris
|
|
|
|
arka
|
|
|
|
armadillo
|
academic/armadillo: Updated for version 8.100.0.
|
2017-10-07 00:34:52 +01:00 |
|
arpack
|
|
|
|
arpack-ng
|
|
|
|
artha
|
academic/artha: Mirror download url.
|
2018-03-06 02:04:16 +07:00 |
|
avl
|
|
|
|
avogadro
|
academic/avogadro: Mirror download url.
|
2018-03-10 07:11:14 +07:00 |
|
bedGraphToBigWig
|
|
|
|
bedtools
|
academic/bedtools: Updated for version 2.27.1.
|
2018-01-13 07:13:04 +07:00 |
|
biblesync
|
academic/biblesync: Updated for version 2.0.1.
|
2018-05-01 22:01:17 +01:00 |
|
bibletime
|
academic/bibletime: Updated for version 2.11.2.
|
2018-06-28 22:22:10 +01:00 |
|
bibus
|
|
|
|
boinc
|
academic/boinc: Added (Open-source software for grid computing).
|
2018-08-18 08:39:47 +07:00 |
|
bowtie
|
|
|
|
bowtie2
|
|
|
|
bpp-core
|
academic/bpp-core: Updated for version 2.4.0.
|
2018-06-17 22:52:37 +01:00 |
|
bpp-phyl
|
academic/bpp-phyl: Updated for version 2.4.0.
|
2018-06-17 23:04:19 +01:00 |
|
bpp-phyl-omics
|
academic/bpp-phyl-omics: Updated for version 2.4.0.
|
2018-06-17 23:09:55 +01:00 |
|
bpp-popgen
|
academic/bpp-popgen: Updated for version 2.4.0.
|
2018-06-17 23:16:12 +01:00 |
|
bpp-seq
|
academic/bpp-seq: Updated for version 2.4.0.
|
2018-06-17 22:56:32 +01:00 |
|
bpp-seq-omics
|
academic/bpp-seq-omics: Updated for version 2.4.0.
|
2018-06-17 23:06:16 +01:00 |
|
bppsuite
|
academic/bppsuite: Updated for version 2.4.0.
|
2018-06-17 23:17:59 +01:00 |
|
btf
|
academic/btf: BUILD bump for SuiteSparse 5.2.0.
|
2018-03-24 06:50:39 +07:00 |
|
bwa
|
academic/bwa: Updated for version 0.7.17.
|
2018-01-13 07:13:04 +07:00 |
|
cadabra2
|
academic/cadabra2: Fix DOWNLOAD url.
|
2018-04-27 00:41:02 +07:00 |
|
CAFS_divergence
|
|
|
|
calc
|
academic/calc: Updated for version 2.12.6.5.
|
2018-05-19 00:45:04 +01:00 |
|
calcoo
|
|
|
|
camd
|
academic/camd: BUILD bump for SuiteSparse 5.2.0.
|
2018-03-24 06:50:39 +07:00 |
|
cap3
|
|
|
|
CAPS_coevolution
|
|
|
|
cblas
|
academic/cblas: Updated for version 3.8.0.
|
2017-12-21 08:19:39 +07:00 |
|
ccolamd
|
academic/ccolamd: BUILD bump for SuiteSparse 5.2.0.
|
2018-03-24 06:50:39 +07:00 |
|
celestia
|
|
|
|
chemtool
|
|
|
|
cholmod
|
academic/cholmod: Updated for version 3.0.12.
|
2018-03-24 06:50:39 +07:00 |
|
cistrome-CEAS
|
|
|
|
cistrome-conductGO
|
|
|
|
cistrome-extra
|
academic/cistrome-extra: Updated for version git_20170829_6334683.
|
2017-10-11 06:19:48 +07:00 |
|
cistrome-MACS
|
|
|
|
cistrome-mdseqpos
|
academic/cistrome-mdseqpos: Updated for v. git_20170829_6334683.
|
2017-10-11 06:19:48 +07:00 |
|
cld2
|
academic/cld2: Fix build on current.
|
2018-03-17 08:51:42 +07:00 |
|
clustalo
|
|
|
|
clustalw
|
|
|
|
clustalx
|
|
|
|
colamd
|
academic/colamd: BUILD bump for SuiteSparse 5.2.0.
|
2018-03-24 06:50:39 +07:00 |
|
convertall
|
|
|
|
copasi
|
academic/copasi: Fix DOWNLOAD_x86_64.
|
2018-08-05 02:04:56 +07:00 |
|
coq
|
|
|
|
cryptominisat
|
academic/cryptominisat: Added (SAT solver).
|
2018-09-14 09:26:36 +01:00 |
|
csparse
|
academic/csparse: BUILD bump for SuiteSparse 5.2.0.
|
2018-03-24 06:50:39 +07:00 |
|
cufflinks
|
|
|
|
cutadapt
|
academic/cutadapt: Updated for version 1.14.
|
2017-10-11 06:19:48 +07:00 |
|
cxsparse
|
academic/cxsparse: BUILD bump for SuiteSparse 5.2.0.
|
2018-03-24 06:50:39 +07:00 |
|
dakota
|
academic/dakota: Updated for version 6.8.
|
2018-06-07 14:33:56 +01:00 |
|
Data2FCS
|
|
|
|
drawtiming
|
|
|
|
ds9
|
academic/ds9: Updated for version 7.6.
|
2018-05-12 06:58:27 +07:00 |
|
easy_spice
|
academic/easy_spice: Use tgz.
|
2017-08-26 07:20:03 +07:00 |
|
edsim51di
|
|
|
|
EMBASSY
|
|
|
|
EMBOSS
|
|
|
|
engauge
|
academic/engauge: Updated for version 10.10.
|
2018-10-21 06:45:27 +07:00 |
|
ent
|
|
|
|
equalx
|
|
|
|
ess
|
academic/ess: Updated for version 17.11.
|
2018-07-27 21:33:34 +07:00 |
|
evopedia_qt
|
|
|
|
exonerate
|
academic/exonerate: Switch to https.
|
2017-10-26 09:25:14 +07:00 |
|
extrema
|
|
|
|
fann
|
|
|
|
fastqc
|
academic/fastqc: Updated for version 0.11.7.
|
2018-06-17 23:28:44 +01:00 |
|
FCSalyzer
|
academic/FCSalyzer: Updated for version 0.9.15_alpha.
|
2018-06-17 22:32:35 +01:00 |
|
fet
|
academic/fet: Updated for version 5.36.1.
|
2018-06-28 20:39:23 +01:00 |
|
finchtv
|
academic/finchtv: Updated for version 1.3.1.
|
2017-10-11 06:19:49 +07:00 |
|
fityk
|
|
|
|
flann
|
|
|
|
flashqard
|
|
|
|
flexbar
|
academic/flexbar: Updated for version 3.4.0.
|
2018-07-07 06:54:16 +07:00 |
|
free42
|
academic/free42: Updated for version 2.0.4.
|
2017-07-29 17:50:21 +07:00 |
|
freechartgeany
|
|
|
|
g3data
|
|
|
|
galculator
|
academic/galculator: Fix download url.
|
2018-03-06 01:27:35 +07:00 |
|
gaw3
|
academic/gaw3: Updated for version 20170716.
|
2017-12-02 06:30:53 +07:00 |
|
Gblocks
|
academic/Gblocks: Fix download url.
|
2018-03-03 08:42:14 +07:00 |
|
gcalctool
|
|
|
|
gchemutils
|
academic/gchemutils: Updated for version 0.14.17.
|
2018-07-08 19:28:35 +01:00 |
|
gcompris
|
academic/gcompris: Updated for version 17.05.
|
2017-12-27 18:10:01 -06:00 |
|
geda-gaf
|
|
|
|
gelemental
|
|
|
|
geneconv
|
academic/geneconv: Switch to https.
|
2017-12-13 16:05:14 +07:00 |
|
genius
|
academic/genius: Updated for version 1.0.23.
|
2018-02-17 07:42:45 +07:00 |
|
genometools
|
academic/genometools: Updated for version 1.5.10.
|
2018-07-08 19:32:20 +01:00 |
|
genpak
|
|
|
|
GeoGebra
|
academic/GeoGebra: Update homepage.
|
2018-06-02 07:32:36 +07:00 |
|
geomview
|
|
|
|
gerbv
|
|
|
|
ggobi
|
|
|
|
ghemical
|
|
|
|
glpk
|
|
|
|
gnucap
|
|
|
|
gp2fasta
|
academic/gp2fasta: Update HOMEPAGE and DOWNLOAD urls.
|
2017-08-12 06:58:19 +07:00 |
|
gpredict
|
academic/gpredict: Updated for version 2.2.1 + new maintainer.
|
2018-09-29 07:47:37 +07:00 |
|
grace
|
|
|
|
gresistor
|
|
|
|
gretl
|
academic/gretl: Updated for version 2017c.
|
2017-07-29 17:50:22 +07:00 |
|
Gridcoin-Research
|
academic/Gridcoin-Research: Updated for version 4.0.0.0.
|
2018-10-21 18:39:03 +01:00 |
|
grpn
|
|
|
|
gspiceui
|
academic/gspiceui: Updated for version 1.1.00.
|
2017-09-02 10:19:45 +01:00 |
|
gtkwave
|
|
|
|
gtypist
|
|
|
|
gwyddion
|
academic/gwyddion: Updated for version 2.51.
|
2018-06-28 20:28:21 +01:00 |
|
HMMER
|
academic/HMMER: Updated for version 3.2.1.
|
2018-06-17 22:34:10 +01:00 |
|
hyphy
|
academic/hyphy: Updated for version 2.3.13.
|
2018-07-08 19:33:53 +01:00 |
|
ij-plugins-LOCI
|
academic/ij-plugins-LOCI: Updated for version 5.8.2.
|
2018-06-17 23:31:07 +01:00 |
|
ij-plugins-UCSD
|
|
|
|
ImageJ
|
academic/ImageJ: Updated for version 1.52.
|
2018-06-17 22:35:46 +01:00 |
|
io_lib
|
|
|
|
irsim
|
|
|
|
isoelectric-point
|
|
|
|
iTest
|
|
|
|
itex2mml
|
academic/itex2mml: Remove obsolete patch.
|
2017-11-04 07:17:46 +07:00 |
|
ITK
|
academic/ITK: Updated for version 4.13.1.
|
2018-09-08 08:37:51 +07:00 |
|
jalview
|
|
|
|
jpicedt
|
|
|
|
jugglinglab
|
|
|
|
karma
|
|
|
|
kile
|
|
|
|
kiwisolver
|
academic/kiwisolver: Added (Cassowary algorithm).
|
2018-11-03 07:45:00 +07:00 |
|
klavaro
|
|
|
|
klu
|
academic/klu: Updated for version 1.3.9.
|
2018-03-24 06:50:39 +07:00 |
|
knime
|
|
|
|
Kst
|
|
|
|
ktikz
|
|
|
|
kurso
|
|
|
|
labplot2
|
|
|
|
ladr
|
academic/ladr: Switch homepage and download to https.
|
2018-10-06 07:25:21 +07:00 |
|
lalnview
|
|
|
|
lapack95
|
|
|
|
lapacke
|
academic/lapacke: Updated for version 3.8.0.
|
2017-12-21 08:19:39 +07:00 |
|
ldl
|
academic/ldl: BUILD bump for SuiteSparse 5.2.0.
|
2018-03-24 06:50:39 +07:00 |
|
libghemical
|
|
|
|
libqalculate
|
academic/libqalculate: Updated for version 2.2.0
|
2018-01-17 19:46:27 +07:00 |
|
link-grammar
|
|
|
|
loggerpro
|
academic/loggerpro: Update homepage.
|
2018-07-17 07:15:39 +07:00 |
|
lpsolve
|
|
|
|
mafft
|
academic/mafft: Updated for version 7.402.
|
2018-06-17 23:32:05 +01:00 |
|
magic
|
|
|
|
mathics
|
|
|
|
mathomatic
|
|
|
|
matio
|
|
|
|
maxima
|
|
|
|
megax
|
academic/megax: Added (Molecular Evolutionary Genetics Analysis).
|
2018-07-13 23:14:52 +01:00 |
|
meme-suite
|
academic/meme-suite: Added (Motif based sequence analysis tools).
|
2017-10-11 06:19:52 +07:00 |
|
mendeleydesktop
|
|
|
|
metis
|
|
|
|
mkDSSP
|
|
|
|
Mnemosyne
|
academic/Mnemosyne: Fix whitespaces.
|
2017-10-07 07:01:53 +07:00 |
|
mpmath
|
|
|
|
mrbayes
|
academic/mrbayes: Fixed download url.
|
2018-06-23 08:44:06 +07:00 |
|
muscle
|
|
|
|
ncbi-blast
|
academic/ncbi-blast: Updated downloar urls.
|
2018-03-02 08:15:00 +07:00 |
|
ncbi-blast-plus
|
academic/ncbi-blast-plus: Updated for version 2.7.1.
|
2018-01-13 07:13:04 +07:00 |
|
ncbi-rmblastn
|
academic/ncbi-rmblastn: Added (NCBI RMBlast).
|
2018-01-13 07:13:04 +07:00 |
|
ncview
|
academic/ncview: Added (a netCDF visual browser).
|
2018-04-07 08:13:13 +07:00 |
|
ngspice
|
academic/ngspice: Updated for version 28.
|
2018-06-08 23:08:21 +01:00 |
|
novocraft
|
academic/novocraft: Updated for version 3.08.02.
|
2018-01-27 07:43:47 +07:00 |
|
octave
|
academic/octave: Updated for version 4.2.2.
|
2018-03-24 06:50:40 +07:00 |
|
OpenFOAM
|
academic/OpenFOAM: Updated for version 6.
|
2018-07-17 07:15:42 +07:00 |
|
pal2nal
|
academic/pal2nal: Updated for version 14.1.
|
2018-01-13 07:13:04 +07:00 |
|
paml
|
academic/paml: Updated for version 4.9h.
|
2018-06-17 23:34:22 +01:00 |
|
pamlX
|
academic/pamlX: Updated to build with paml-4.9h.
|
2018-06-17 23:41:03 +01:00 |
|
papi
|
academic/papi: Fixed ownership.
|
2018-03-10 07:11:02 +07:00 |
|
pari
|
academic/pari: Updated for version 2.11.0.
|
2018-08-24 00:51:31 +01:00 |
|
parmetis
|
academic/parmetis: Update info.
|
2018-05-29 08:25:33 +07:00 |
|
patsy
|
|
|
|
pcb
|
academic/pcb: Updated for version 4.0.2.
|
2018-01-10 23:55:51 +07:00 |
|
perlprimer
|
academic/perlprimer: Updated for version 1.2.3_f7d3bd0.
|
2018-07-08 19:40:22 +01:00 |
|
PhyML
|
academic/PhyML: Updated for version 3.3.20180621.
|
2018-07-08 19:25:48 +01:00 |
|
pianobooster
|
|
|
|
plasmidomics
|
|
|
|
prank-msa
|
academic/prank-msa: Updated for version 170427.
|
2017-10-11 06:19:49 +07:00 |
|
primer3
|
academic/primer3: Updated for version 2.4.0.
|
2018-07-08 19:42:08 +01:00 |
|
pspp
|
academic/pspp: Updated for version 1.0.1.
|
2018-06-17 19:13:25 +01:00 |
|
pulseview
|
academic/pulseview: Switch to https.
|
2017-08-26 09:29:14 +07:00 |
|
PyAMG
|
|
|
|
pyCRAC
|
academic/pyCRAC: Updated for version 1.3.2.
|
2018-07-07 06:54:17 +07:00 |
|
pyfits
|
academic/pyfits: Update download url.
|
2018-03-02 08:16:03 +07:00 |
|
pysam
|
academic/pysam: Change EMAIL.
|
2018-07-07 06:54:17 +07:00 |
|
qalculate-gtk
|
academic/qalculate-gtk: Updated for version 2.2.0
|
2018-01-17 19:46:27 +07:00 |
|
qcl
|
academic/qcl: Added (A Programming Language for Quantum Computers).
|
2018-02-17 07:42:46 +07:00 |
|
qhull
|
|
|
|
qrupdate
|
|
|
|
QtiPlot
|
academic/QtiPlot: Updated homepage.
|
2018-05-02 22:58:31 +01:00 |
|
qtoctave
|
academic/qtoctave: Mirror download url.
|
2018-03-06 02:04:16 +07:00 |
|
qucs
|
academic/qucs: Noted orphan status (no SBo maintainer).
|
2018-06-23 08:44:12 +07:00 |
|
R
|
academic/R: Updated for version 3.5.1.
|
2018-07-21 06:53:34 +07:00 |
|
rbio
|
academic/rbio: BUILD bump for SuiteSparse 5.2.0.
|
2018-03-24 06:50:39 +07:00 |
|
reduce-algebra
|
academic/reduce-algebra: Updated for version 20180920svn4765.
|
2018-09-21 21:40:29 +01:00 |
|
RepeatMasker
|
academic/RepeatMasker: Added (Screen DNA sequence).
|
2018-01-13 07:13:05 +07:00 |
|
root
|
|
|
|
sage
|
academic/sage: Unmaintained.
|
2018-08-11 07:23:09 +07:00 |
|
sage-bin
|
academic/sage-bin: Added (python based mathematics software).
|
2018-09-15 17:50:08 +01:00 |
|
samtools
|
|
|
|
scidavis
|
academic/scidavis: Patched to fix crashes.
|
2018-08-02 19:40:39 +07:00 |
|
scilab
|
academic/scilab: Updated for version 6.0.1.
|
2018-08-11 07:23:09 +07:00 |
|
scipy
|
academic/scipy: Switch homepage to https.
|
2018-06-02 11:24:14 +01:00 |
|
scipy3
|
|
|
|
seaview
|
academic/seaview: Updated for version 4.7.
|
2018-06-17 23:42:33 +01:00 |
|
sequence-analysis
|
|
|
|
Shark
|
academic/Shark: Added (machine learning library).
|
2018-04-28 06:40:13 +07:00 |
|
sigrok-cli
|
academic/sigrok-cli: Switch to https.
|
2017-08-26 09:30:34 +07:00 |
|
siril
|
|
|
|
slatec
|
|
|
|
smath-studio
|
academic/smath-studio: Changed maintainer.
|
2018-06-23 08:44:12 +07:00 |
|
snpEff
|
academic/snpEff: Updated for version 4.3t.
|
2018-01-13 07:13:05 +07:00 |
|
solfege
|
|
|
|
spades
|
academic/spades: Updated for version 3.12.0.
|
2018-06-17 23:45:19 +01:00 |
|
speedcrunch
|
academic/speedcrunch: Fixed tarball handling.
|
2018-01-21 11:35:28 +00:00 |
|
spiceopus
|
|
|
|
spidey
|
|
|
|
spqr
|
academic/spqr: BUILD bump for SuiteSparse 5.2.0.
|
2018-03-24 06:50:40 +07:00 |
|
squizz
|
|
|
|
staden
|
|
|
|
STAR
|
academic/STAR: Updated for version 2.6.1c.
|
2018-10-21 06:47:02 +07:00 |
|
stellarium
|
academic/stellarium: Updated for version 0.18.1.
|
2018-08-11 07:23:05 +07:00 |
|
suitesparse
|
academic/suitesparse: Updated for version 5.3.0
|
2018-07-07 06:54:25 +07:00 |
|
suitesparseconfig
|
academic/suitesparseconfig: Updated for version 5.2.0.
|
2018-03-24 06:50:38 +07:00 |
|
sundials
|
academic/sundials: Updated for version 3.1.1.
|
2018-08-02 19:22:21 +07:00 |
|
sword
|
academic/sword: Fix for newer icu4c.
|
2018-04-27 01:22:08 +07:00 |
|
sword-data-kjv
|
academic/sword-data-kjv: Updated for version 1.8.1.
|
2018-01-17 19:46:31 +07:00 |
|
sympy
|
|
|
|
t_coffee
|
|
|
|
tabix
|
|
|
|
tilem
|
|
|
|
tilem2
|
|
|
|
tkgate
|
academic/tkgate: Mirror download url.
|
2018-03-10 07:11:14 +07:00 |
|
topdraw
|
|
|
|
tophat
|
academic/tophat: Force a single make job.
|
2017-07-29 17:50:23 +07:00 |
|
TreeGraph
|
academic/TreeGraph: Added (A feature rich phylogenetic tree editor).
|
2018-06-23 08:44:00 +07:00 |
|
treeviewx
|
academic/treeviewx: Added (Program to display phylogenetic trees).
|
2018-07-10 10:07:47 +01:00 |
|
trfind
|
academic/trfind: Fix executable for use with RepeatMasker.
|
2018-01-17 19:46:30 +07:00 |
|
tuxmath
|
academic/tuxmath: Update homepage.
|
2018-07-17 07:15:40 +07:00 |
|
tuxtype2
|
academic/tuxtype2: Update homepage.
|
2018-07-17 07:15:40 +07:00 |
|
ucsc-blat
|
|
|
|
ugene
|
academic/ugene: Updated for version 1.30.0.
|
2018-06-18 00:09:53 +01:00 |
|
umfpack
|
academic/umfpack: BUILD bump for SuiteSparse 5.2.0.
|
2018-03-24 06:50:40 +07:00 |
|
units
|
academic/units: Updated for version 2.18.
|
2018-11-10 07:46:57 +07:00 |
|
vcftools
|
academic/vcftools: Updated for version 0.1.15.
|
2017-10-11 06:19:50 +07:00 |
|
verilog
|
|
|
|
veusz
|
academic/veusz: Fix build against new Qt5.
|
2018-09-23 06:11:51 +07:00 |
|
wehi-cellsymphony
|
|
|
|
wehi-deid
|
|
|
|
wehi-hackit
|
|
|
|
wehi-weasel
|
academic/wehi-weasel: Updated for version 3.4.2.17.
|
2017-10-11 06:19:51 +07:00 |
|
wmcalc
|
academic/wmcalc: Updated for version 0.7.
|
2018-09-15 19:23:41 +01:00 |
|
WordNet
|
academic/WordNet: Switch homepage to https.
|
2018-03-17 13:58:49 +00:00 |
|
wxmacmolplt
|
|
|
|
wxMaxima
|
academic/wxMaxima: Switch homepage to https.
|
2018-10-06 07:25:18 +07:00 |
|
xcircuit
|
|
|
|
xephem
|
|
|
|
xflr5
|
academic/xflr5: Updated for version 6.42.
|
2018-06-23 02:22:22 +07:00 |
|
xfoil
|
|
|
|
xiphos
|
academic/xiphos: Updated for version 4.1.0.
|
2018-04-28 06:40:13 +07:00 |
|
xoscope
|
|
|
|
Xyce
|
academic/Xyce: Update info.
|
2018-05-29 08:28:21 +07:00 |
|
ZeGrapher
|
academic/ZeGrapher: Added (math graphing).
|
2018-01-19 11:45:00 +00:00 |
|
zotero
|
academic/zotero: Updated for version 5.0.52.
|
2018-07-08 19:44:33 +01:00 |
