| .. |
|
abntex
|
|
|
|
aenig4
|
|
|
|
aline
|
|
|
|
amd
|
academic/amd: BUILD bump for SuiteSparse 5.1.0.
|
2017-12-21 08:19:40 +07:00 |
|
amplicon
|
|
|
|
amplifx
|
|
|
|
antiprism
|
|
|
|
archaeopteryx
|
academic/archaeopteryx: Updated for version 0.9920b.
|
2017-10-11 06:19:45 +07:00 |
|
aris
|
|
|
|
arka
|
|
|
|
armadillo
|
academic/armadillo: Updated for version 8.100.0.
|
2017-10-07 00:34:52 +01:00 |
|
arpack
|
|
|
|
arpack-ng
|
|
|
|
artha
|
|
|
|
avl
|
|
|
|
avogadro
|
|
|
|
bedGraphToBigWig
|
|
|
|
bedtools
|
academic/bedtools: Updated for version 2.27.1.
|
2018-01-13 07:13:04 +07:00 |
|
biblesync
|
|
|
|
bibletime
|
academic/bibletime: Updated for version 2.11.1.
|
2017-10-04 10:57:52 +01:00 |
|
bibus
|
|
|
|
bowtie
|
|
|
|
bowtie2
|
|
|
|
bpp-core
|
academic/bpp-core: Updated for version 2.3.1.
|
2017-10-11 06:19:46 +07:00 |
|
bpp-phyl
|
academic/bpp-phyl: Updated for version 2.3.1.
|
2017-10-11 06:19:46 +07:00 |
|
bpp-phyl-omics
|
academic/bpp-phyl-omics: Updated for version 2.3.1.
|
2017-10-11 06:19:47 +07:00 |
|
bpp-popgen
|
academic/bpp-popgen: Updated for version 2.3.1.
|
2017-10-11 06:19:47 +07:00 |
|
bpp-seq
|
academic/bpp-seq: Updated for version 2.3.1.
|
2017-10-11 06:19:46 +07:00 |
|
bpp-seq-omics
|
academic/bpp-seq-omics: Updated for version 2.3.1.
|
2017-10-11 06:19:46 +07:00 |
|
bppsuite
|
academic/bppsuite: Updated for version 2.3.1.
|
2017-10-11 06:19:47 +07:00 |
|
btf
|
academic/btf: BUILD bump for SuiteSparse 5.1.0.
|
2017-12-21 08:19:40 +07:00 |
|
bwa
|
academic/bwa: Updated for version 0.7.17.
|
2018-01-13 07:13:04 +07:00 |
|
cadabra2
|
academic/cadabra2: Updated for version 2.1.7.
|
2017-12-02 06:31:04 +07:00 |
|
CAFS_divergence
|
|
|
|
calc
|
|
|
|
calcoo
|
|
|
|
camd
|
academic/camd: BUILD bump for SuiteSparse 5.1.0.
|
2017-12-21 08:19:40 +07:00 |
|
cap3
|
|
|
|
CAPS_coevolution
|
|
|
|
cblas
|
academic/cblas: Updated for version 3.8.0.
|
2017-12-21 08:19:39 +07:00 |
|
ccolamd
|
academic/ccolamd: BUILD bump for SuiteSparse 5.1.0.
|
2017-12-21 08:19:40 +07:00 |
|
celestia
|
|
|
|
chemtool
|
|
|
|
cholmod
|
academic/cholmod: BUILD bump for SuiteSparse 5.1.0.
|
2017-12-21 08:19:40 +07:00 |
|
cistrome-CEAS
|
|
|
|
cistrome-conductGO
|
|
|
|
cistrome-extra
|
academic/cistrome-extra: Updated for version git_20170829_6334683.
|
2017-10-11 06:19:48 +07:00 |
|
cistrome-MACS
|
|
|
|
cistrome-mdseqpos
|
academic/cistrome-mdseqpos: Updated for v. git_20170829_6334683.
|
2017-10-11 06:19:48 +07:00 |
|
cld2
|
|
|
|
clustalo
|
|
|
|
clustalw
|
|
|
|
clustalx
|
|
|
|
colamd
|
academic/colamd: BUILD bump for SuiteSparse 5.1.0.
|
2017-12-21 08:19:40 +07:00 |
|
convertall
|
|
|
|
copasi
|
academic/copasi: Updated for version 4.22.170.
|
2017-11-17 01:25:54 +07:00 |
|
coq
|
|
|
|
csparse
|
academic/csparse: Updated for version 3.2.0.
|
2017-12-21 08:19:40 +07:00 |
|
cufflinks
|
|
|
|
cutadapt
|
academic/cutadapt: Updated for version 1.14.
|
2017-10-11 06:19:48 +07:00 |
|
cxsparse
|
academic/cxsparse: Updated for version 3.2.0.
|
2017-12-21 08:19:40 +07:00 |
|
dakota
|
academic/dakota: Updated for version 6.7.
|
2017-12-16 07:32:03 +07:00 |
|
Data2FCS
|
|
|
|
drawtiming
|
|
|
|
ds9
|
|
|
|
easy_spice
|
academic/easy_spice: Use tgz.
|
2017-08-26 07:20:03 +07:00 |
|
edsim51di
|
|
|
|
EMBASSY
|
|
|
|
EMBOSS
|
|
|
|
engauge
|
|
|
|
ent
|
|
|
|
equalx
|
|
|
|
ess
|
|
|
|
evopedia_qt
|
|
|
|
exonerate
|
academic/exonerate: Switch to https.
|
2017-10-26 09:25:14 +07:00 |
|
extrema
|
|
|
|
fann
|
|
|
|
fastqc
|
|
|
|
FCSalyzer
|
academic/FCSalyzer: Updated for version 0.9.14_alpha.
|
2017-10-11 06:19:32 +07:00 |
|
fet
|
academic/fet: Updated for version 5.34.0.
|
2017-11-20 17:59:05 +07:00 |
|
finchtv
|
academic/finchtv: Updated for version 1.3.1.
|
2017-10-11 06:19:49 +07:00 |
|
fityk
|
|
|
|
flann
|
|
|
|
flashqard
|
|
|
|
flexbar
|
academic/flexbar: Added (barcode and adapter removal).
|
2017-09-16 07:15:01 +07:00 |
|
free42
|
academic/free42: Updated for version 2.0.4.
|
2017-07-29 17:50:21 +07:00 |
|
freechartgeany
|
|
|
|
g3data
|
|
|
|
galculator
|
|
|
|
gaw3
|
academic/gaw3: Updated for version 20170716.
|
2017-12-02 06:30:53 +07:00 |
|
Gblocks
|
|
|
|
gcalctool
|
|
|
|
gchemutils
|
|
|
|
gcompris
|
academic/gcompris: Updated for version 17.05.
|
2017-12-27 18:10:01 -06:00 |
|
geda-gaf
|
|
|
|
gelemental
|
|
|
|
geneconv
|
academic/geneconv: Switch to https.
|
2017-12-13 16:05:14 +07:00 |
|
genius
|
|
|
|
genometools
|
|
|
|
genpak
|
|
|
|
GeoGebra
|
|
|
|
geomview
|
|
|
|
gerbv
|
|
|
|
ggobi
|
|
|
|
ghemical
|
|
|
|
glpk
|
|
|
|
gnucap
|
|
|
|
gp2fasta
|
academic/gp2fasta: Update HOMEPAGE and DOWNLOAD urls.
|
2017-08-12 06:58:19 +07:00 |
|
gpredict
|
|
|
|
grace
|
|
|
|
gresistor
|
|
|
|
gretl
|
academic/gretl: Updated for version 2017c.
|
2017-07-29 17:50:22 +07:00 |
|
grpn
|
|
|
|
gspiceui
|
academic/gspiceui: Updated for version 1.1.00.
|
2017-09-02 10:19:45 +01:00 |
|
gtkwave
|
|
|
|
gtypist
|
|
|
|
gwyddion
|
academic/gwyddion: Updated for version 2.49.
|
2017-08-19 07:10:31 +07:00 |
|
HMMER
|
|
|
|
hyphy
|
academic/hyphy: Updated for version 2.3.8.
|
2018-01-13 07:13:04 +07:00 |
|
ij-plugins-LOCI
|
|
|
|
ij-plugins-UCSD
|
|
|
|
ImageJ
|
|
|
|
io_lib
|
|
|
|
irsim
|
|
|
|
isoelectric-point
|
|
|
|
iTest
|
|
|
|
itex2mml
|
academic/itex2mml: Remove obsolete patch.
|
2017-11-04 07:17:46 +07:00 |
|
jalview
|
|
|
|
jpicedt
|
|
|
|
jugglinglab
|
|
|
|
karma
|
|
|
|
kile
|
|
|
|
klavaro
|
|
|
|
klu
|
academic/klu: BUILD bump for SuiteSparse 5.1.0.
|
2017-12-21 08:19:40 +07:00 |
|
knime
|
|
|
|
Kst
|
|
|
|
ktikz
|
|
|
|
kurso
|
|
|
|
labplot2
|
|
|
|
ladr
|
|
|
|
lalnview
|
|
|
|
lapack95
|
|
|
|
lapacke
|
academic/lapacke: Updated for version 3.8.0.
|
2017-12-21 08:19:39 +07:00 |
|
ldl
|
academic/ldl: BUILD bump for SuiteSparse 5.1.0.
|
2017-12-21 08:19:40 +07:00 |
|
libghemical
|
|
|
|
libqalculate
|
academic/libqalculate: Updated for version 2.2.0
|
2018-01-17 19:46:27 +07:00 |
|
link-grammar
|
|
|
|
loggerpro
|
|
|
|
lpsolve
|
|
|
|
mafft
|
academic/mafft: Updated for version 7.313.
|
2018-01-13 07:13:04 +07:00 |
|
magic
|
|
|
|
mathics
|
|
|
|
mathomatic
|
|
|
|
matio
|
|
|
|
maxima
|
|
|
|
megacc
|
academic/megacc: Updated for version 7.0.26_1.
|
2017-10-11 06:19:49 +07:00 |
|
meme-suite
|
academic/meme-suite: Added (Motif based sequence analysis tools).
|
2017-10-11 06:19:52 +07:00 |
|
mendeleydesktop
|
|
|
|
metis
|
|
|
|
mkDSSP
|
|
|
|
Mnemosyne
|
academic/Mnemosyne: Fix whitespaces.
|
2017-10-07 07:01:53 +07:00 |
|
mpmath
|
|
|
|
mrbayes
|
|
|
|
muscle
|
|
|
|
ncbi-blast
|
|
|
|
ncbi-blast-plus
|
academic/ncbi-blast-plus: Updated for version 2.7.1.
|
2018-01-13 07:13:04 +07:00 |
|
ncbi-rmblastn
|
academic/ncbi-rmblastn: Added (NCBI RMBlast).
|
2018-01-13 07:13:04 +07:00 |
|
ngspice
|
academic/ngspice: Fixed md5sums.
|
2017-12-16 07:32:03 +07:00 |
|
novocraft
|
academic/novocraft: Added (map short reads onto reference genome).
|
2017-09-16 07:15:01 +07:00 |
|
octave
|
|
|
|
OpenFOAM
|
academic/OpenFOAM: Fix build.
|
2017-09-30 00:42:08 +01:00 |
|
pal2nal
|
academic/pal2nal: Updated for version 14.1.
|
2018-01-13 07:13:04 +07:00 |
|
paml
|
academic/paml: Updated for version 4.9g.
|
2018-01-13 07:13:04 +07:00 |
|
pamlX
|
academic/pamlX: Updated for paml-4.9g compatibility.
|
2018-01-13 07:13:04 +07:00 |
|
papi
|
|
|
|
parmetis
|
|
|
|
patsy
|
|
|
|
pcb
|
academic/pcb: Updated for version 4.0.2.
|
2018-01-10 23:55:51 +07:00 |
|
perlprimer
|
|
|
|
PhyML
|
academic/PhyML: Updated for version 3.3.20170530.
|
2017-10-11 06:19:45 +07:00 |
|
pianobooster
|
|
|
|
plasmidomics
|
|
|
|
prank-msa
|
academic/prank-msa: Updated for version 170427.
|
2017-10-11 06:19:49 +07:00 |
|
primer3
|
|
|
|
pspp
|
|
|
|
pulseview
|
academic/pulseview: Switch to https.
|
2017-08-26 09:29:14 +07:00 |
|
PyAMG
|
|
|
|
pyCRAC
|
academic/pyCRAC: Updated for version 1.2.4.0.
|
2017-11-20 17:59:07 +07:00 |
|
pyfits
|
|
|
|
pysam
|
academic/pysam: Added (read/write genomic data sets).
|
2017-09-16 07:15:00 +07:00 |
|
qalculate-gtk
|
academic/qalculate-gtk: Updated for version 2.2.0
|
2018-01-17 19:46:27 +07:00 |
|
qhull
|
|
|
|
qrupdate
|
|
|
|
QtiPlot
|
|
|
|
qtoctave
|
|
|
|
qucs
|
|
|
|
R
|
academic/R: Updated for version 3.4.3.
|
2018-01-06 06:55:32 +07:00 |
|
rbio
|
academic/rbio: BUILD bump for SuiteSparse 5.1.0.
|
2017-12-21 08:19:40 +07:00 |
|
reduce-algebra
|
academic/reduce-algebra: Updated for version 20171112svn4264.
|
2017-11-18 12:40:26 +07:00 |
|
RepeatMasker
|
academic/RepeatMasker: Added (Screen DNA sequence).
|
2018-01-13 07:13:05 +07:00 |
|
root
|
|
|
|
sage
|
academic/sage: New maintainer.
|
2017-08-12 06:57:31 +07:00 |
|
samtools
|
|
|
|
scidavis
|
academic/scidavis: Patched to fix crashes.
|
2017-12-02 06:31:04 +07:00 |
|
scilab
|
academic/scilab: Updated for version 6.0.0 + new maintainer.
|
2017-08-12 06:57:30 +07:00 |
|
scipy
|
|
|
|
scipy3
|
|
|
|
seaview
|
academic/seaview: Updated for version 4.6.3.
|
2018-01-13 07:13:05 +07:00 |
|
sequence-analysis
|
|
|
|
sigrok-cli
|
academic/sigrok-cli: Switch to https.
|
2017-08-26 09:30:34 +07:00 |
|
siril
|
|
|
|
slatec
|
|
|
|
smath-studio
|
|
|
|
snpEff
|
academic/snpEff: Updated for version 4.3t.
|
2018-01-13 07:13:05 +07:00 |
|
solfege
|
|
|
|
spades
|
academic/spades: Updated for version 3.11.1.
|
2017-10-11 06:19:50 +07:00 |
|
speedcrunch
|
academic/speedcrunch: Updated for version 0.12.0
|
2018-01-17 19:46:27 +07:00 |
|
spiceopus
|
|
|
|
spidey
|
|
|
|
spqr
|
academic/spqr: BUILD bump for SuiteSparse 5.1.0.
|
2017-12-21 08:19:41 +07:00 |
|
squizz
|
|
|
|
staden
|
|
|
|
stellarium
|
academic/stellarium: Updated for version 0.16.0.
|
2017-08-26 07:19:30 +07:00 |
|
suitesparse
|
academic/suitesparse: Updated for version 5.1.2
|
2018-01-10 23:55:45 +07:00 |
|
suitesparseconfig
|
academic/suitesparseconfig: Updated for version 5.1.0.
|
2017-12-21 08:19:39 +07:00 |
|
sundials
|
|
|
|
sword
|
|
|
|
sword-data-kjv
|
|
|
|
sympy
|
|
|
|
t_coffee
|
|
|
|
tabix
|
|
|
|
tilem
|
|
|
|
tilem2
|
|
|
|
tkgate
|
|
|
|
topdraw
|
|
|
|
tophat
|
academic/tophat: Force a single make job.
|
2017-07-29 17:50:23 +07:00 |
|
treeview
|
academic/treeview: Updated for version 0.5.1.
|
2017-08-13 09:00:13 +07:00 |
|
trfind
|
academic/trfind: Fix executable for use with RepeatMasker.
|
2018-01-17 19:46:30 +07:00 |
|
tuxmath
|
|
|
|
tuxtype2
|
|
|
|
ucsc-blat
|
|
|
|
ugene
|
academic/ugene: Updated for version 1.29.0.
|
2018-01-13 07:13:05 +07:00 |
|
umfpack
|
academic/umfpack: BUILD bump for SuiteSparse 5.1.0.
|
2017-12-21 08:19:41 +07:00 |
|
units
|
academic/units: Updated for version 2.16.
|
2018-01-06 06:41:44 +07:00 |
|
vcftools
|
academic/vcftools: Updated for version 0.1.15.
|
2017-10-11 06:19:50 +07:00 |
|
verilog
|
|
|
|
veusz
|
academic/veusz: Updated for version 2.1.1.
|
2017-11-18 12:40:26 +07:00 |
|
wehi-cellsymphony
|
|
|
|
wehi-deid
|
|
|
|
wehi-hackit
|
|
|
|
wehi-weasel
|
academic/wehi-weasel: Updated for version 3.4.2.17.
|
2017-10-11 06:19:51 +07:00 |
|
wmcalc
|
|
|
|
WordNet
|
|
|
|
wxmacmolplt
|
|
|
|
wxMaxima
|
|
|
|
xcircuit
|
|
|
|
xephem
|
|
|
|
xfoil
|
|
|
|
xiphos
|
academic/xiphos: Updated for version 4.0.7.
|
2017-10-21 06:58:09 +07:00 |
|
xoscope
|
|
|
|
Xyce
|
|
|
|
zotero
|
academic/zotero: Updated for version 5.0.33.
|
2018-01-13 07:13:05 +07:00 |
