.. |
abella
|
academic/abella: Fix README.
|
2020-10-17 09:36:38 +07:00 |
abntex
|
|
|
aenig4
|
academic/aenig4: Fix README.
|
2020-10-17 09:36:38 +07:00 |
aline
|
|
|
aliview
|
|
|
amd
|
academic/amd: BUILD bump for SuiteSparse 5.8.1.
|
2021-01-17 08:45:04 +07:00 |
amplicon
|
|
|
amplifx
|
academic/amplifx: Change URLs.
|
2020-09-15 08:28:29 +07:00 |
antiprism
|
academic/antiprism: Added -fpermissive to the CXXFLAGS.
|
2021-04-17 23:08:20 -05:00 |
archaeopteryx
|
|
|
aris
|
academic/aris: Updated for version 2. New maintainer.
|
2021-02-14 06:27:53 +07:00 |
arka
|
|
|
armadillo
|
academic/armadillo: Fix README.
|
2020-10-17 09:36:39 +07:00 |
arpack
|
|
|
arpack-ng
|
academic/arpack-ng: Updated for version 3.8.0.
|
2021-01-17 08:45:03 +07:00 |
artha
|
academic/artha: Updated for version 1.0.5.
|
2021-04-17 23:09:19 -05:00 |
avl
|
|
|
avogadro
|
academic/avogadro: Fix README.
|
2020-10-17 09:36:40 +07:00 |
bcftools
|
academic/bcftools: Updated for version 1.12.
|
2021-03-27 10:23:16 +07:00 |
bedGraphToBigWig
|
|
|
bedtools
|
academic/bedtools: Updated for version 2.29.2.
|
2020-09-15 08:30:05 +07:00 |
biblesync
|
academic/biblesync: Update README.
|
2020-06-28 08:16:52 +07:00 |
bibletime
|
academic/bibletime: Do not use hardcoded path.
|
2021-01-17 08:44:52 +07:00 |
bibus
|
academic/bibus: Fix README.
|
2020-10-17 09:36:40 +07:00 |
biopython
|
|
|
boinc
|
academic/boinc: Updated for version 7.16.16
|
2021-04-10 17:04:57 +07:00 |
bowtie
|
|
|
bowtie2
|
academic/bowtie2: Updated for version 2.4.2.
|
2020-10-10 10:18:46 +07:00 |
bowtie2-legacy
|
|
|
bpp-core
|
|
|
bpp-phyl
|
|
|
bpp-phyl-omics
|
|
|
bpp-popgen
|
|
|
bpp-seq
|
|
|
bpp-seq-omics
|
|
|
bpp1.9-numcalc
|
academic/bpp1.9-numcalc: Added (Bio++ 1.9 NumCalc Library)
|
2020-10-10 10:18:47 +07:00 |
bpp1.9-phyl
|
academic/bpp1.9-phyl: Fix slack-desc.
|
2020-10-17 09:37:28 +07:00 |
bpp1.9-seq
|
academic/bpp1.9-seq: Added (Bio++ 1.9 Seq Library)
|
2020-10-10 10:18:47 +07:00 |
bpp1.9-utils
|
academic/bpp1.9-utils: Added (Bio++ 1.9 Utils Library)
|
2020-10-10 10:18:47 +07:00 |
bppsuite
|
|
|
btf
|
academic/btf: BUILD bump for SuiteSparse 5.8.1.
|
2021-01-17 08:45:05 +07:00 |
bwa
|
|
|
cadabra2
|
academic/cadabra2: Updated for version 2.3.6.3.
|
2021-01-22 23:42:13 +07:00 |
CAFS_divergence
|
academic/CAFS_divergence: Fix README.
|
2020-10-17 09:36:33 +07:00 |
calc
|
|
|
calcoo
|
academic/calcoo: Fix README.
|
2020-10-17 09:36:41 +07:00 |
camd
|
academic/camd: BUILD bump for SuiteSparse 5.8.1.
|
2021-01-17 08:45:04 +07:00 |
cap3
|
academic/cap3: Fix README.
|
2020-10-17 09:36:41 +07:00 |
CAPS_coevolution
|
|
|
cblas
|
academic/cblas: Updated for version 3.9.1.
|
2021-04-17 11:47:42 +07:00 |
ccolamd
|
academic/ccolamd: BUILD bump for SuiteSparse 5.8.1.
|
2021-01-17 08:45:04 +07:00 |
cdo
|
academic/cdo: Updated for version 1.9.10.
|
2021-02-14 06:28:01 +07:00 |
celestia
|
|
|
chartgeany
|
academic/chartgeany: Added (market analysis tool)
|
2020-05-10 08:37:02 +07:00 |
chemtool
|
|
|
cholmod
|
academic/cholmod: Updated for version 3.0.14.
|
2021-01-17 08:45:06 +07:00 |
cistrome-CEAS
|
|
|
cistrome-conductGO
|
|
|
cistrome-extra
|
|
|
cistrome-MACS
|
|
|
cistrome-mdseqpos
|
|
|
clark-ugene
|
|
|
cld2
|
academic/cld2: Fix README.
|
2020-10-17 09:36:42 +07:00 |
clustalo
|
|
|
clustalw
|
|
|
clustalx
|
|
|
colamd
|
academic/colamd: BUILD bump for SuiteSparse 5.8.1.
|
2021-01-17 08:45:04 +07:00 |
colin
|
academic/colin: Various fixes. Rebuilt.
|
2020-11-14 17:16:40 +07:00 |
convertall
|
academic/convertall: Updated for version 0.8.0.
|
2021-02-21 00:05:02 +07:00 |
copasi
|
academic/copasi: Updated for version 4.28.226.
|
2020-06-20 07:59:28 +07:00 |
coq
|
|
|
cryptominisat
|
academic/cryptominisat: Updated for version 5.7.1.
|
2020-05-10 08:36:56 +07:00 |
csparse
|
academic/csparse: BUILD bump for SuiteSparse 5.8.1.
|
2021-01-17 08:45:05 +07:00 |
cufflinks
|
|
|
cutadapt
|
|
|
cvc4
|
academic/cvc4: Updated for version 1.8.
|
2020-09-05 08:26:44 +07:00 |
cxsparse
|
academic/cxsparse: BUILD bump for SuiteSparse 5.8.1.
|
2021-01-17 08:45:05 +07:00 |
dakota
|
academic/dakota: Fix README.
|
2020-10-17 09:36:43 +07:00 |
Data2FCS
|
|
|
datamash
|
academic/datamash: Added (Basic numeric, textual & statistical ops)
|
2020-12-12 07:09:22 +07:00 |
DendroPy
|
|
|
diamond
|
academic/diamond: Updated for version 0.9.36.
|
2020-09-15 08:30:45 +07:00 |
drawtiming
|
|
|
ds9
|
academic/ds9: Updated for version 8.2.1.
|
2021-04-02 10:31:08 +07:00 |
easy_spice
|
|
|
ed-v6
|
academic/ed-v6: Fix README.
|
2020-10-17 09:36:43 +07:00 |
edsim51di
|
|
|
EMBASSY
|
|
|
EMBOSS
|
|
|
engauge
|
academic/engauge: Fix README.
|
2020-10-17 09:36:44 +07:00 |
ent
|
|
|
eprover
|
academic/eprover: Updated for version 2.5.
|
2020-09-05 08:26:44 +07:00 |
equalx
|
|
|
ess
|
academic/ess: Fix README.
|
2020-10-17 09:36:44 +07:00 |
evopedia_qt
|
academic/evopedia_qt: Use proper github URL.
|
2020-02-24 06:10:05 +07:00 |
exonerate
|
|
|
extrema
|
|
|
fann
|
academic/fann: Fix README.
|
2020-10-17 09:36:44 +07:00 |
fastqc
|
|
|
FCSalyzer
|
|
|
fet
|
academic/fet: Updated for version 5.49.1.
|
2021-03-20 11:00:42 +07:00 |
fiji
|
academic/fiji: Updated for version 20200902_2101.
|
2020-09-15 08:31:23 +07:00 |
finchtv
|
|
|
fityk
|
academic/fityk: Fix README.
|
2020-10-17 09:36:44 +07:00 |
flann
|
academic/flann: Fix README.
|
2020-10-17 09:36:45 +07:00 |
flashqard
|
|
|
flexbar
|
|
|
free42
|
academic/free42: Fix README.
|
2020-10-17 09:36:45 +07:00 |
FreeFem
|
academic/FreeFem: Fix README.
|
2020-10-17 09:36:33 +07:00 |
g3data
|
|
|
galculator
|
academic/galculator: Fix build on current.
|
2021-01-24 00:00:48 +07:00 |
gaw3
|
|
|
Gblocks
|
|
|
gchemutils
|
|
|
gcompris
|
academic/gcompris: Fix README.
|
2020-10-17 09:36:45 +07:00 |
gcompris-qt
|
academic/gcompris-qt: Updated for version 1.1.
|
2021-03-27 09:15:33 +07:00 |
geda-gaf
|
academic/geda-gaf: Fix README.
|
2020-10-17 09:36:46 +07:00 |
gelemental
|
|
|
geneconv
|
|
|
genius
|
|
|
genometools
|
academic/genometools: Updated for version 1.6.1.
|
2020-09-15 08:32:19 +07:00 |
genpak
|
|
|
GeoGebra
|
|
|
geomview
|
|
|
gerbv
|
academic/gerbv: Fix README.
|
2020-10-17 09:36:46 +07:00 |
getdp
|
academic/getdp: Fix README, slack-desc.
|
2020-10-17 09:36:49 +07:00 |
ggobi
|
academic/ggobi: Fix README.
|
2020-10-17 09:37:32 +07:00 |
ghemical
|
|
|
glpk
|
|
|
gmsh
|
academic/gmsh: Fix README, slack-desc.
|
2020-10-17 09:36:49 +07:00 |
gnucap
|
academic/gnucap: Fix README.
|
2020-10-17 09:37:32 +07:00 |
gp2fasta
|
|
|
gpredict
|
|
|
grace
|
academic/grace: Fix README.
|
2020-10-17 09:37:32 +07:00 |
gresistor
|
|
|
gretl
|
|
|
gri
|
academic/gri: Update HOMEPAGE.
|
2020-04-10 00:21:09 +07:00 |
Gridcoin-Research
|
academic/Gridcoin-Research: Patched for boost >= 1.73.0.
|
2021-04-17 22:53:30 -05:00 |
grpn
|
academic/grpn: Fix README.
|
2020-10-17 09:37:33 +07:00 |
gspiceui
|
|
|
gtkwave
|
academic/gtkwave: Fix README.
|
2020-10-17 09:37:33 +07:00 |
gtypist
|
|
|
gwyddion
|
academic/gwyddion: Updated for version 2.58.
|
2021-02-14 06:28:01 +07:00 |
h5utils
|
academic/h5utils: Fixed the md5sum.
|
2020-04-04 09:50:02 +07:00 |
harminv
|
|
|
HMMER
|
academic/HMMER: Updated for version 3.3.1.
|
2020-09-15 08:26:08 +07:00 |
hyphy
|
|
|
IGV
|
academic/IGV: Added (Integrative Genomics Viewer)
|
2020-11-22 01:14:24 +07:00 |
io_lib
|
academic/io_lib: Updated for version 1.14.13.
|
2020-09-15 08:34:19 +07:00 |
irsim
|
|
|
isoelectric-point
|
|
|
iTest
|
|
|
itex2mml
|
|
|
ITK
|
academic/ITK: Do not use hardcoded path.
|
2021-01-17 08:44:52 +07:00 |
jalview
|
academic/jalview: Updated for version 2.11.1.0.
|
2020-09-15 08:35:34 +07:00 |
jellyfish_k-mer
|
|
|
jpicedt
|
academic/jpicedt: Fix README.
|
2020-10-17 09:37:33 +07:00 |
jugglinglab
|
|
|
karma
|
|
|
kile
|
|
|
kiwisolver
|
academic/kiwisolver: Fix README.
|
2020-10-17 09:37:33 +07:00 |
klavaro
|
|
|
klu
|
academic/klu: BUILD bump for SuiteSparse 5.8.1.
|
2021-01-17 08:45:06 +07:00 |
knime
|
|
|
kraken
|
|
|
Kst
|
academic/Kst: Fix README.
|
2020-10-17 09:36:34 +07:00 |
ktikz
|
|
|
kurso
|
|
|
labplot2
|
|
|
ladr
|
|
|
lalnview
|
academic/lalnview: Update script.
|
2020-09-19 01:01:15 +07:00 |
lapack95
|
academic/lapack95: Convert script to utf-8.
|
2020-10-17 09:36:35 +07:00 |
lapacke
|
academic/lapacke: Updated for version 3.9.1.
|
2021-04-17 11:47:43 +07:00 |
latex2html
|
academic/latex2html: Updated for version 2020.
|
2020-05-16 08:44:12 +07:00 |
ldl
|
academic/ldl: BUILD bump for SuiteSparse 5.8.1.
|
2021-01-17 08:45:05 +07:00 |
libghemical
|
|
|
libqalculate
|
academic/libqalculate: Fix README.
|
2020-10-17 09:37:35 +07:00 |
link-grammar
|
academic/link-grammar: Fix README.
|
2020-10-17 09:37:35 +07:00 |
locarna
|
|
|
loggerpro
|
|
|
lpsolve
|
|
|
mafft
|
academic/mafft: Updated for version 7.471.
|
2020-09-15 08:37:09 +07:00 |
magic
|
|
|
mathics
|
|
|
mathomatic
|
academic/mathomatic: Fix README.
|
2020-10-17 09:37:35 +07:00 |
matio
|
|
|
maxima
|
academic/maxima: Updated for version 5.44.0.
|
2021-03-20 11:00:46 +07:00 |
meep
|
academic/meep: Updated for version 1.17.1.
|
2021-01-30 09:19:18 +07:00 |
megax
|
academic/megax: Updated for version 10.1.8_1.
|
2020-09-15 08:37:49 +07:00 |
meme-db-gomo
|
|
|
meme-db-motif
|
|
|
meme-db-tgene
|
|
|
meme-suite
|
academic/meme-suite: Updated for version 5.1.1.
|
2020-09-15 08:39:20 +07:00 |
mendeleydesktop
|
|
|
MetaPhlAn2
|
academic/MetaPhlAn2: Fix README.
|
2020-10-17 09:36:34 +07:00 |
metis
|
|
|
mkDSSP
|
|
|
Mnemosyne
|
academic/Mnemosyne: Fix README.
|
2020-10-17 09:36:35 +07:00 |
mpb
|
academic/mpb: Updated for version 1.11.1.
|
2021-01-30 09:23:19 +07:00 |
mrbayes
|
|
|
muscle
|
academic/muscle: Update script and added manual page.
|
2020-05-22 23:39:23 +07:00 |
ncbi-blast
|
|
|
ncbi-blast+
|
academic/ncbi-blast+: Updated for version 2.10.1.
|
2020-09-15 08:39:58 +07:00 |
ncbi-rmblastn
|
|
|
nco
|
academic/nco: Updated for version 4.9.7.
|
2021-02-14 06:28:00 +07:00 |
ncview
|
|
|
ngspice
|
academic/ngspice: KiCAD build fixes.
|
2021-03-13 09:02:37 +07:00 |
novocraft
|
|
|
octave
|
academic/octave: Updated for version 6.2.0.
|
2021-04-17 11:47:43 +07:00 |
OpenFOAM
|
academic/OpenFOAM: Fix README.
|
2020-10-17 09:36:34 +07:00 |
pal2nal
|
|
|
paml
|
academic/paml: Updated for version 4.9j.
|
2020-09-15 08:40:44 +07:00 |
pamlX
|
academic/pamlX: Update substitution.
|
2020-09-15 08:41:31 +07:00 |
papi
|
|
|
pari
|
academic/pari: Updated for version 2.13.1.
|
2021-04-17 11:47:40 +07:00 |
parmetis
|
academic/parmetis: Fix README.
|
2020-10-17 09:37:36 +07:00 |
patsy
|
|
|
pcalc
|
|
|
pcb
|
|
|
perlprimer
|
|
|
PhyML
|
academic/PhyMLR: Updated for version 3.3.20200621.
|
2020-09-15 08:26:50 +07:00 |
pianobooster
|
academic/pianobooster: Fix README.
|
2020-10-17 09:37:36 +07:00 |
plasmidomics
|
|
|
prank-msa
|
|
|
primer3
|
|
|
pspp
|
|
|
pulseview
|
|
|
PyAMG
|
academic/PyAMG: Fix README.
|
2020-10-17 09:36:37 +07:00 |
pyCRAC
|
academic/pyCRAC: Updated for version 1.5.0.
|
2021-02-27 08:24:29 +07:00 |
pyfits
|
|
|
pysam
|
academic/pysam: Updated for version 0.16.0.1.
|
2020-10-10 10:18:46 +07:00 |
qalculate-gtk
|
academic/qalculate-gtk: Updated to version 3.10.0
|
2020-05-16 08:44:19 +07:00 |
qcl
|
|
|
qhull
|
|
|
qrupdate
|
|
|
QtiPlot
|
|
|
qucs
|
|
|
R
|
academic/R: Updated for version 4.0.0.
|
2020-06-03 15:09:15 +07:00 |
RAxML
|
|
|
rbio
|
academic/rbio: BUILD bump for SuiteSparse 5.8.1.
|
2021-01-17 08:45:05 +07:00 |
reduce-algebra
|
academic/reduce-algebra: Updated for version 20201007svn5424.
|
2020-10-10 10:18:44 +07:00 |
RepeatMasker
|
academic/RepeatMasker: Updated for version 4.1.1.
|
2020-09-15 08:27:40 +07:00 |
root
|
|
|
rpy2
|
academic/rpy2: Updated for version 3.4.3.
|
2021-04-02 09:17:41 +07:00 |
sage
|
academic/sage: Fix README, info.
|
2020-10-17 09:36:50 +07:00 |
sage-bin
|
|
|
samtools
|
academic/samtools: Updated for version 1.12.
|
2021-03-27 10:23:15 +07:00 |
samtools-legacy
|
|
|
scidavis
|
|
|
scilab
|
academic/scilab: Fix md5sum.
|
2020-06-28 08:16:48 +07:00 |
scipy
|
academic/scipy: Fix README.
|
2020-10-17 09:37:36 +07:00 |
scipy3
|
|
|
seaview
|
academic/seaview: Updated for version 5.0.4.
|
2020-09-15 08:42:25 +07:00 |
seqkit
|
academic/seqkit: Updated for version 0.13.2.
|
2020-09-15 08:43:09 +07:00 |
SeqMonk
|
academic/SeqMonk: Added (A Mapped Sequence Analysis tool)
|
2020-10-31 11:15:27 +07:00 |
sequence-analysis
|
|
|
Shark
|
|
|
sigrok-cli
|
|
|
siril
|
academic/siril: Fix README.
|
2020-10-17 09:37:36 +07:00 |
slatec
|
|
|
smath-studio
|
|
|
snpEff
|
|
|
solfege
|
|
|
spades
|
academic/spades: Updated for version 3.14.1.
|
2020-09-15 08:43:44 +07:00 |
speedcrunch
|
|
|
spiceopus
|
|
|
spidey
|
|
|
spqr
|
academic/spqr: Updated for SuiteSparse 5.8.1.
|
2021-01-17 08:45:06 +07:00 |
squizz
|
|
|
staden
|
|
|
STAR
|
academic/STAR: Updated for version 2.7.8a.
|
2021-03-06 11:11:55 +07:00 |
stellarium
|
academic/stellarium: Updated for version 0.20.4.
|
2021-01-15 19:33:43 +00:00 |
stringtie
|
|
|
SU2
|
|
|
suitesparse
|
academic/suitesparse: Update README
|
2021-01-17 08:45:02 +07:00 |
suitesparseconfig
|
academic/suitesparseconfig: Updated for version 5.8.1.
|
2021-01-17 08:45:04 +07:00 |
sundials
|
academic/sundials: Fix download link.
|
2021-04-17 11:47:50 +07:00 |
sword
|
academic/sword: Update README.
|
2020-06-28 08:16:51 +07:00 |
sword-data-kjv
|
academic/sword-data-kjv: Updated for version 1.8.1_1.
|
2021-04-10 17:04:36 +07:00 |
t_coffee
|
|
|
tabix-legacy
|
|
|
tiemu
|
academic/tiemu: Fix README.
|
2020-10-17 09:37:37 +07:00 |
tilem
|
|
|
tilem2
|
|
|
tkgate
|
|
|
topdraw
|
|
|
tophat
|
|
|
treebest-ensembl
|
|
|
TreeGraph
|
|
|
treerecs
|
academic/treerecs: Fix README, install doinst.
|
2020-10-17 09:36:51 +07:00 |
treeviewx
|
|
|
trfind
|
academic/trfind: Updated for version 4.09.1.
|
2020-09-16 07:33:44 +07:00 |
trimmomatic
|
academic/trimmomatic: Updated for version 0.39.
|
2020-09-16 07:34:27 +07:00 |
tuxmath
|
academic/tuxmath: Fix README.
|
2020-10-17 09:37:38 +07:00 |
tuxtype2
|
|
|
ucsc-blat
|
|
|
ugene
|
academic/ugene: Updated for version 35.0.
|
2020-09-16 07:35:05 +07:00 |
umfpack
|
academic/umfpack: Updated for SuiteSparse 5.8.1.
|
2021-01-17 08:45:06 +07:00 |
units
|
academic/units: Updated for version 2.20.
|
2020-10-03 08:39:32 +07:00 |
vCAPS_coevolution
|
academic/vCAPS_coevolution: Added (Coevolution Analysis)
|
2020-10-10 10:18:48 +07:00 |
vcftools
|
|
|
verilator
|
academic/verilator: Added (Verilog HDL Simulator).
|
2020-03-20 19:30:05 +07:00 |
verilog
|
academic/verilog: Fix README.
|
2020-10-17 09:37:38 +07:00 |
veusz
|
academic/veusz: Updated for version 3.3.1.
|
2020-12-12 07:09:22 +07:00 |
ViennaRNA
|
academic/ViennaRNA: Update DOWNLOAD.
|
2020-12-18 12:41:29 +07:00 |
wehi-cellsymphony
|
|
|
wehi-deid
|
|
|
wehi-hackit
|
|
|
wehi-weasel
|
academic/wehi-weasel: Updated for version 3.7.1.18.
|
2020-09-15 08:24:56 +07:00 |
WEVOTE
|
|
|
wmcalc
|
academic/wmcalc: Fix README.
|
2020-10-17 09:37:38 +07:00 |
WordNet
|
academic/WordNet: Fix README.
|
2020-10-17 09:36:37 +07:00 |
wxmacmolplt
|
|
|
wxMaxima
|
academic/wxMaxima: Updated for version 21.01.0.
|
2021-04-10 17:04:42 +07:00 |
xcircuit
|
|
|
xephem
|
academic/xephem: Fix README.
|
2020-10-17 09:37:38 +07:00 |
xflr5
|
|
|
xfoil
|
academic/xfoil: Fix README.
|
2020-10-17 09:37:39 +07:00 |
xiphos
|
academic/xiphos: Do not use hardcoded path.
|
2021-01-17 08:44:53 +07:00 |
xoscope
|
|
|
Xyce
|
academic/Xyce: Fix README.
|
2020-10-17 09:36:37 +07:00 |
z3
|
|
|
ZeGrapher
|
|
|
zotero
|
academic/zotero: Updated for version 5.0.85.
|
2020-04-01 18:56:51 +07:00 |