David Spencer ecaab058cc academic/itex2mml: Updated for version 1.5.1. ... Fixed build failure with bison-3. Removed bashisms and hardcoded Ruby version. (The itexToMML.tar.gz version was already 1.5.1...) Signed-off-by: David Spencer <baildon.research@googlemail.com> Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>		2016-01-17 09:40:16 +07:00
..
abntex
aline	academic/aline: Add option to change row length.	2015-04-11 18:20:35 +07:00
amd	academic/amd: BUILD bump for SuiteSparse 4.4.6.	2016-01-09 07:12:48 +07:00
amplicon
amplifx
antiprism	academic/antiprism: Compress man pages.	2016-01-06 23:38:29 +00:00
archeopteryx	academic/archeopteryx: Updated for version 0.9901_beta.	2015-02-05 06:31:04 +07:00
aris
arka
armadillo	academic/armadillo: Added (C++ linear algebra library).	2015-02-28 11:16:30 +07:00
arpack
arpack-ng	academic/arpack-ng: Updated for version 3.3.0.	2015-10-31 08:33:23 +07:00
artha
avogadro	academic/avogadro: Fixed underlinking with gcc-5.3.0.	2016-01-17 09:40:16 +07:00
bedtools	academic/bedtools: Updated for version 2.25.0.	2015-11-11 23:02:49 +07:00
biblesync	academic/biblesync: Added (Bible Software Navigation Library).	2015-04-03 20:50:28 +07:00
bibletime	academic/bibletime: Updated for version 2.10.1.	2015-03-28 02:22:09 +07:00
bibus	academic/bibus: Updated for version 1.5.2 + new maintainer.	2014-05-04 10:52:53 +07:00
bowtie	academic/bowtie: Fix DOWNLOAD link.	2014-10-03 10:16:48 +07:00
bowtie2
btf	academic/btf: BUILD bump for SuiteSparse 4.4.6.	2016-01-09 07:12:48 +07:00
bwa	academic/bwa: Updated for version 0.7.12.	2015-02-05 06:31:05 +07:00
calc	academic/calc: Updated for 2.12.5.0.	2014-12-16 09:11:50 +07:00
calcoo
camd	academic/camd: BUILD bump for SuiteSparse 4.4.6.	2016-01-09 07:12:48 +07:00
cap3
cblas	academic/cblas: Updated for version 3.6.0 + new maintainer.	2016-01-09 07:12:48 +07:00
ccolamd	academic/ccolamd: BUILD bump for SuiteSparse 4.4.6.	2016-01-09 07:12:48 +07:00
celestia
chemtool
cholmod	academic/cholmod: Updated for version 3.0.6.	2016-01-09 07:12:48 +07:00
cistrome-CEAS
cistrome-MACS
cld2	academic/cld2: Fix file ownership.	2016-01-06 23:40:59 +00:00
clustalo	academic/clustalo: Updated for version 1.2.1.	2014-03-03 01:31:21 +07:00
clustalw
clustalx
colamd	academic/colamd: BUILD bump for SuiteSparse 4.4.6.	2016-01-09 07:12:48 +07:00
convertall
copasi	academic/copasi: Updated for version 4.16.104.	2015-09-26 07:15:37 +07:00
coq
csparse	academic/csparse: BUILD bump for SuiteSparse 4.4.6.	2016-01-09 07:12:48 +07:00
cufflinks	Multiple: Fixed .info file (removed eigen3)	2016-01-17 09:40:16 +07:00
cutadapt	academic/cutadapt: Updated for version 1.9.	2015-11-11 23:04:26 +07:00
cxsparse	academic/cxsparse: BUILD bump for SuiteSparse 4.4.6.	2016-01-09 07:12:48 +07:00
drawtiming	academic/drawtiming: Added (tool for drawing timing diagrams).	2014-06-22 11:18:20 +07:00
EMBASSY	academic/EMBASSY: Use self-hosted.	2014-07-20 19:02:33 +07:00
EMBOSS	academic/EMBOSS: Use self-hosted.	2014-07-20 19:03:16 +07:00
engauge	academic/engauge: Added (Graphs to Numbers Digitizer).	2014-06-12 06:51:38 +07:00
ent
equalx	academic/equalx: Added (equation editor).	2015-03-12 22:28:03 +07:00
ess
evopedia_qt	academic/evopedia_qt: Fix MD5SUM.	2015-10-31 08:33:10 +07:00
extrema	academic/extrema: New maintainer.	2014-06-21 01:22:49 +07:00
fann	academic/fann: Fix .pc file location.	2016-01-07 00:24:13 +00:00
fastqc	academic/fastqc: Updated for version 0.11.3.	2015-04-11 18:23:57 +07:00
fet	academic/fet: Fixed typo in slack-desc.	2016-01-10 21:34:39 -06:00
finchtv	academic/finchtv: Added (Brilliant Trace Viewer).	2015-04-11 22:39:24 +07:00
flann
flashqard
free42	academic/free42: Fix MD5SUM.	2014-08-17 18:23:48 +07:00
freechartgeany	academic/freechartgeany: Updated for version 2.0.2.	2015-12-30 18:39:47 +07:00
g3data
galculator	academic/galculator: Updated for version 2.1.4.	2015-09-16 12:23:28 +07:00
gaw3	academic/gaw3: Updated for version 20150228.	2015-07-29 06:41:29 +07:00
Gblocks
gcalctool
gchemutils	academic/gchemutils: Updated for version 0.14.10.	2015-02-05 06:31:05 +07:00
gcompris	academic/gcompris: Updated for version 15.10.	2015-11-02 19:21:15 +07:00
geda-gaf
gelemental
geneconv	academic/geneconv: Use cp instead of cp -a.	2014-07-20 18:36:51 +07:00
genius
genometools	academic/genometools: Updated for version 1.5.7.	2015-11-14 07:07:34 +07:00
genpak
GeoGebra	academic/GeoGebra: Updated for version 5.0.156.0.	2015-10-06 22:14:07 +07:00
geomview
gerbv
ggobi
ghemical
glpk	academic/glpk: Updated for version 4.55.	2015-04-12 10:07:04 +07:00
gnucap	academic/gnucap: Added (A modern analog and mixed signal circuit simulator)	2014-06-11 08:17:59 -05:00
gp2fasta
gpredict
grace
gresistor
gretl	academic/gretl: Updated for version 2015d.	2015-10-28 23:54:19 +07:00
grpn
gspiceui	academic/gspiceui: Added (A GUI for Ng-Spice and GNUcap).	2014-06-12 06:51:48 +07:00
gtkwave
gtypist	academic/gtypist: Update desktop file.	2014-11-02 08:27:44 +07:00
gwyddion	academic/gwyddion: Updated for version 2.43.	2015-12-03 23:44:25 +07:00
ij-plugins-LOCI	academic/ij-plugins-LOCI: Updated for version 5.1.5.	2015-11-11 23:05:06 +07:00
ij-plugins-UCSD
ImageJ	academic/ImageJ: Updated for version 1.49.	2015-07-04 10:38:19 +07:00
io_lib	academic/io_lib: Updated for version 1.14.6.	2015-11-14 07:07:34 +07:00
isoelectric-point
iTest	academic/iTest: Added (computer-based tests software).	2014-05-04 22:27:22 +07:00
itex2mml	academic/itex2mml: Updated for version 1.5.1.	2016-01-17 09:40:16 +07:00
jalview	academic/jalview: Updated for version 2.9.	2015-11-11 23:07:05 +07:00
jpicedt	academic/jpicedt: Fix VERSION.	2015-08-17 23:17:31 +07:00
jugglinglab	academic/jugglinglab: Updated for version 0.6.2.	2014-08-19 16:39:24 +07:00
kile
klavaro	academic/klavaro: Added (Free touch typing tutor program).	2015-07-11 14:10:52 +07:00
klu	academic/klu: Updated for version 1.3.3.	2016-01-09 07:12:48 +07:00
knime	academic/knime: Updated for version 2.12.0.	2015-08-01 07:31:11 +07:00
Kst	academic/Kst: Added (KDE4 Plotting Tool).	2014-12-12 14:19:06 +07:00
ktikz	academic/ktikz: Update HOMEPAGE and DOWNLOAD.	2014-08-19 16:39:19 +07:00
kurso	academic/kurso: Workaround CRLF issue.	2015-06-22 08:04:36 +07:00
labplot2	academic/labplot2: Update DOWNLOAD url.	2015-10-23 03:07:51 +07:00
ladr
lalnview
lapack95
ldl	academic/ldl: BUILD bump for SuiteSparse 4.4.6.	2016-01-09 07:12:48 +07:00
libghemical
link-grammar
lpsolve	academic/lpsolve: Added (linear pogramming solver).	2014-10-11 00:14:13 +07:00
mafft	academic/mafft: Updated for version 7.221.	2015-06-20 00:42:09 +07:00
mathics	academic/mathics: Added (computer algebra system).	2015-07-16 10:57:22 -05:00
mathomatic
maxima	academic/maxima: Updated for version 5.37.2.	2015-10-19 01:38:32 +07:00
mendeleydesktop	academic/mendeleydesktop: Updated for version 1.15.	2015-10-19 01:36:29 +07:00
metis	academic/metis: Fix potential linking problems.	2015-06-14 07:55:32 +07:00
mkDSSP
Mnemosyne	academic/Mnemosyne: Updated for version 2.3.4.	2015-10-17 07:52:20 +07:00
mpmath	academic/mpmath: Added (arithmetic library).	2015-07-16 10:57:22 -05:00
mrbayes	academic/mrbayes: Updated for version 3.2.5.	2015-06-20 00:44:12 +07:00
muscle
ncbi-blast
ncbi-blast-plus	academic/ncbi-blast-plus: Updated for version 2.2.31.	2015-11-11 23:08:17 +07:00
ngspice	academic/ngspice: Updated for version 26 + new maintainer.	2014-07-28 11:10:32 +07:00
octave	academic/octave: Updated for version 4.0.0.	2015-06-14 07:55:36 +07:00
omlibraries	academic/omlibraries: Updated for version svn20150624.	2015-06-26 00:50:25 +07:00
opengrads
openmodelica	academic/openmodelica: Fix build failure.	2016-01-07 22:21:23 +00:00
paml	academic/paml: Fixed CHECKSUM.	2015-04-11 18:27:02 +07:00
pamlX	academic/pamlX: Updated for version 1.3.1.	2015-04-11 18:27:43 +07:00
parmetis	academic/parmetis: Added (parallel library).	2015-09-11 01:15:23 +07:00
patsy	Multiple: Fixed .info file (removed pysetuptools)	2016-01-17 09:40:16 +07:00
pcb
perlprimer
PhyML
pianobooster	academic/pianobooster: Update .info.	2014-10-30 21:06:44 +07:00
plasmidomics
primer3
pspp	Multiple: Fixed .info file (removed gsl)	2016-01-17 09:40:16 +07:00
pulseview	academic/pulseview: Added (GUI for sigrok).	2015-08-03 08:39:14 +07:00
PyAMG	academic/PyAMG: Added (Algebraic Multigrid Library).	2015-03-15 23:32:08 +07:00
pyfits
qhull	academic/qhull: New Maintainer.	2014-04-07 14:43:50 +07:00
qrupdate	academic/qrupdate: Fix doc permission.	2015-01-01 15:58:08 +07:00
QtiPlot	academic/QtiPlot: Patched for gsl-2.1.	2016-01-17 09:40:16 +07:00
qtoctave
qucs	academic/qucs: Updated for version 0.0.18.	2014-11-28 09:09:56 +07:00
R	academic/R: Updated for version 3.2.2.	2015-08-22 01:11:06 +07:00
rbio	academic/rbio: BUILD bump for SuiteSparse 4.4.6.	2016-01-09 07:12:48 +07:00
root	academic/root: Patched for gsl-2.1.	2016-01-17 09:40:16 +07:00
sage	academic/sage: Updated for version 6.10.	2015-12-19 16:32:22 +07:00
samtools
scilab	academic/scilab: Fix .pc file location.	2016-01-07 01:39:05 +00:00
scipy	academic/scipy: Updated for version 0.14.0.	2014-10-30 20:27:29 +07:00
seaview	academic/seaview: Updated for version 4.5.4.	2015-03-27 07:58:54 +07:00
sequence-analysis	academic/sequence-analysis: Updated for version 1.7.2.	2015-11-11 23:09:52 +07:00
sigrok-cli	academic/sigrok-cli: Added (command-line frontend for sigrok).	2015-08-01 00:47:12 +07:00
slatec
smath-studio	academic/smath-studio: Updated for version 0.97.5346.	2014-11-27 13:10:04 +07:00
snpEff	academic/snpEff: Updated for version 4.1l.	2015-11-11 23:10:46 +07:00
solfege
spades	academic/spades: Updated for version 3.6.1.	2015-11-14 07:07:34 +07:00
spatialite-tools	academic/spatialite-tools: Fixed download link	2016-01-10 21:36:31 -06:00
spatialite_gui	academic/spatialite_gui: Removed APPROVED line.	2015-03-22 15:51:29 +07:00
speedcrunch	academic/speedcrunch: Fix DOWNLOAD.	2015-10-31 08:33:10 +07:00
spiceopus	academic/spiceopus: Added (circuit simulator).	2014-06-25 00:09:05 +07:00
spidey	academic/spidey: Added x86_64 source.	2015-02-05 06:31:08 +07:00
spqr	academic/spqr: Updated for version 2.0.2.	2016-01-09 07:12:48 +07:00
squizz	academic/squizz: Fix VERSION.	2015-11-14 22:48:18 +07:00
staden	academic/staden: Fix build against tklib 0.6.	2015-02-05 06:31:08 +07:00
stellarium	academic/stellarium: Updated for version 0.13.3.	2015-10-17 07:44:54 +07:00
suitesparse	academic/suitesparse: Update DOWNLOAD url.	2015-09-05 17:53:34 +07:00
suitesparseconfig	academic/suitesparseconfig: Updated for version 4.4.6.	2016-01-09 07:12:48 +07:00
sundials	academic/sundials: Use /usr/lib64 on x86_64.	2016-01-07 01:40:19 +00:00
sword	academic/sword: Update EMAIL.	2015-04-25 04:00:12 +07:00
sword-data-kjv	academic/sword-data-kjv: Update MD5SUM.	2016-01-09 07:12:22 +07:00
sympy	academic/sympy: Updated for version 0.7.6.	2015-07-16 10:57:21 -05:00
t_coffee	academic/t_coffee: Updated for version 11.00.8cbe486.	2014-10-03 10:16:52 +07:00
tabix
TauDEM	academic/TauDEM: Updated for version 5.2.0.	2015-03-16 00:09:22 +07:00
tilem
tilem2
tkgate	academic/tkgate: Added (An event driven digital circuit simulator).	2014-06-21 19:28:03 +07:00
topdraw
tophat	academic/tophat: Updated for version 2.1.0.	2015-11-11 23:11:21 +07:00
treeview
tuxmath
tuxtype2
ucsc-blat
ugene	academic/ugene: Updated for version 1.16.2.	2015-06-20 00:57:59 +07:00
umfpack	academic/umfpack: BUILD bump for SuiteSparse 4.4.6.	2016-01-09 07:12:48 +07:00
units	academic/units: Updated for version 2.12.	2015-11-28 07:25:59 +07:00
vcftools	academic/vcftools: Updated for version 0.1.14_2_g78add55.	2015-11-11 23:12:27 +07:00
verilog
veusz	academic/veusz: Updated for version 1.23.	2015-05-13 23:07:40 +07:00
wmcalc	academic/wmcalc: Fix MD5SUM.	2015-10-31 08:33:10 +07:00
WordNet
wxmacmolplt	academic/wxmacmolplt: Update DOWNLOAD url.	2015-11-05 00:45:20 +07:00
wxMaxima	academic/wxMaxima: Updated for version 15.08.2.	2015-12-30 17:46:28 +07:00
xcircuit
xephem
xiphos	academic/xiphos: Updated for version 4.0.4.	2015-09-05 06:25:08 +07:00
xoscope	academic/xoscope: Updated for version 2.1.	2015-02-21 09:03:58 +07:00
Xyce	academic/Xyce: Update README.	2015-10-22 07:20:21 +07:00
zotero	academic/zotero: Updated for version 4.0.28.	2015-11-11 23:13:32 +07:00