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academic/clustalo: Updated for version 1.2.1.

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Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
This commit is contained in:
Petar Petrov 2014-03-03 01:31:21 +07:00 committed by Willy Sudiarto Raharjo
parent d903bd6c78
commit 282a9d6a01
3 changed files with 16 additions and 12 deletions
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6
academic/clustalo/README
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@ -5,8 +5,10 @@ allowing hundreds of thousands of sequences to be aligned in only a
few hours. In addition, the quality of alignments is superior to
previous versions, as measured by a range of popular benchmarks.
Clustal Omega is currently a command line-only tool, and is only
suitable for aligning protein sequences, not DNA or RNA.
Clustal Omega is currently a command line-only tool, but the following
independent programs provide an easy to use GUI:
- seaview
- ugene
If you like Clustal-Omega please cite:

14
academic/clustalo/clustalo.SlackBuild
View file

@ -2,7 +2,7 @@
# Slackware build script for clustalo
# Copyright 2011-2013 Petar Petrov, ppetrov@paju.oulu.fi
# Copyright 2011-2014 Petar Petrov, petar.petrov@student.oulu.fi
# All rights reserved.
#
# Redistribution and use of this script, with or without modification, is
@ -23,7 +23,7 @@
# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
PRGNAM=clustalo
VERSION=${VERSION:-1.2.0}
VERSION=${VERSION:-1.2.1}
BUILD=${BUILD:-1}
TAG=${TAG:-_SBo}
@ -66,13 +66,15 @@ tar xvf $CWD/$SRCNAM-$VERSION.tar.gz
cd $SRCNAM-$VERSION
chown -R root:root .
find -L . \
\( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 -o -perm 511 \) \
-exec chmod 755 {} \; -o \
\( -perm 666 -o -perm 664 -o -perm 600 -o -perm 444 -o -perm 440 -o -perm 400 \) \
-exec chmod 644 {} \;
\( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 \
-o -perm 511 \) -exec chmod 755 {} \; -o \
\( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \
-o -perm 440 -o -perm 400 \) -exec chmod 644 {} \;
CFLAGS="$SLKCFLAGS" \
CXXFLAGS="$SLKCFLAGS" \
AM_CFLAGS="$SLKCFLAGS" \
AM_CXXFLAGS="$SLKCFLAGS" \
./configure \
--prefix=/usr \
--libdir=/usr/lib${LIBDIRSUFFIX} \

8
academic/clustalo/clustalo.info
View file

@ -1,10 +1,10 @@
PRGNAM="clustalo"
VERSION="1.2.0"
VERSION="1.2.1"
HOMEPAGE="http://www.clustal.org/omega/"
DOWNLOAD="http://www.clustal.org/omega/clustal-omega-1.2.0.tar.gz"
MD5SUM="23d03e5512c86f7175a148930e210fab"
DOWNLOAD="http://www.clustal.org/omega/clustal-omega-1.2.1.tar.gz"
MD5SUM="7ea360ef0c615d3a07c872e2345df3e1"
DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
REQUIRES="argtable"
MAINTAINER="Petar Petrov"
EMAIL="ppetrov@paju.oulu.fi"
EMAIL="petar.petrov@student.oulu.fi"