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academic/clustalo: Updated for version 1.2.1.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
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3 changed files with 16 additions and 12 deletions
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@ -5,8 +5,10 @@ allowing hundreds of thousands of sequences to be aligned in only a
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few hours. In addition, the quality of alignments is superior to
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previous versions, as measured by a range of popular benchmarks.
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Clustal Omega is currently a command line-only tool, and is only
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suitable for aligning protein sequences, not DNA or RNA.
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Clustal Omega is currently a command line-only tool, but the following
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independent programs provide an easy to use GUI:
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- seaview
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- ugene
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If you like Clustal-Omega please cite:
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@ -2,7 +2,7 @@
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# Slackware build script for clustalo
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# Copyright 2011-2013 Petar Petrov, ppetrov@paju.oulu.fi
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# Copyright 2011-2014 Petar Petrov, petar.petrov@student.oulu.fi
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# All rights reserved.
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#
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# Redistribution and use of this script, with or without modification, is
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@ -23,7 +23,7 @@
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# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
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PRGNAM=clustalo
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VERSION=${VERSION:-1.2.0}
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VERSION=${VERSION:-1.2.1}
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BUILD=${BUILD:-1}
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TAG=${TAG:-_SBo}
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@ -66,13 +66,15 @@ tar xvf $CWD/$SRCNAM-$VERSION.tar.gz
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cd $SRCNAM-$VERSION
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chown -R root:root .
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find -L . \
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\( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 -o -perm 511 \) \
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-exec chmod 755 {} \; -o \
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\( -perm 666 -o -perm 664 -o -perm 600 -o -perm 444 -o -perm 440 -o -perm 400 \) \
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-exec chmod 644 {} \;
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\( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 \
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-o -perm 511 \) -exec chmod 755 {} \; -o \
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\( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \
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-o -perm 440 -o -perm 400 \) -exec chmod 644 {} \;
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CFLAGS="$SLKCFLAGS" \
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CXXFLAGS="$SLKCFLAGS" \
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AM_CFLAGS="$SLKCFLAGS" \
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AM_CXXFLAGS="$SLKCFLAGS" \
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./configure \
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--prefix=/usr \
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--libdir=/usr/lib${LIBDIRSUFFIX} \
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@ -1,10 +1,10 @@
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PRGNAM="clustalo"
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VERSION="1.2.0"
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VERSION="1.2.1"
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HOMEPAGE="http://www.clustal.org/omega/"
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DOWNLOAD="http://www.clustal.org/omega/clustal-omega-1.2.0.tar.gz"
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MD5SUM="23d03e5512c86f7175a148930e210fab"
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DOWNLOAD="http://www.clustal.org/omega/clustal-omega-1.2.1.tar.gz"
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MD5SUM="7ea360ef0c615d3a07c872e2345df3e1"
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DOWNLOAD_x86_64=""
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MD5SUM_x86_64=""
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REQUIRES="argtable"
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MAINTAINER="Petar Petrov"
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EMAIL="ppetrov@paju.oulu.fi"
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EMAIL="petar.petrov@student.oulu.fi"
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