slackbuilds_ponce/academic
Nick Smallbone 3f3095188a
academic/z3: Updated for version 4.11.2.
Signed-off-by: Andrew Clemons <andrew.clemons@gmail.com>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2022-10-08 09:12:54 +07:00
..
abntex academic/abntex: Updated for version 20200715_f0a4d3c. 2022-02-27 22:29:04 -06:00
aenig4
aeskulap academic/aeskulap: Fix shebang. 2022-04-09 15:45:58 +07:00
aline
aliview academic/aliview: Updated for version 1.28. 2022-07-29 21:57:48 +07:00
AlphaPlot academic/AlphaPlot: Added (data analysis and visualization) 2022-04-30 13:51:47 +07:00
amd academic/amd: Change i486 to i586 2022-06-07 02:23:02 -04:00
amplicon
amplifx academic/amplifx: Fix download URL. 2022-04-02 12:20:16 -04:00
antiprism academic/antiprism: Change i486 to i586 2022-06-07 02:23:02 -04:00
archaeopteryx academic/archaeopteryx: Use zulu-openjdk11. 2022-03-03 15:56:50 +07:00
aris academic/aris: New maintainer. Update patch. 2022-08-13 10:40:37 +07:00
arka
armadillo academic/armadillo: Fix download URL, doc dir. 2022-04-02 12:27:10 -04:00
arpack academic/arpack: Change i486 to i586 2022-06-07 02:23:02 -04:00
arpack-ng academic/arpack-ng: Change i486 to i586 2022-06-07 02:23:02 -04:00
artha
avl
avogadroapp academic/avogadroapp: Updated for version 1.97.0. 2022-08-13 10:40:39 +07:00
avogadrolibs academic/avogadrolibs: Updated for version 1.97.0. 2022-08-13 10:40:39 +07:00
bcftools academic/bcftools: Updted to version 1.15.1 2022-04-16 12:12:48 +07:00
bedGraphToBigWig academic/bedGraphToBigWig: Strip binary. 2022-04-04 12:54:04 -04:00
bedtools
biblesync
bibletime academic/bibletime: Update email address. 2022-06-09 13:19:35 -04:00
bibus
biopython academic/biopython: Updated for version 1.79. 2022-08-06 20:16:08 +07:00
boinc academic/boinc: Upgraded to version 7.18.1 2022-05-07 13:59:13 +07:00
bowtie academic/bowtie: Updated install all binaries. 2022-08-13 10:40:38 +07:00
bowtie2 academic/bowtie2: Mark x86 as unsupported. 2022-03-18 00:26:11 +07:00
bowtie2-legacy academic/bowtie2-legacy: Patch source. 2022-03-03 09:38:11 +00:00
bpp-core academic/bpp-core: Added (Bio++ Core Library) 2022-09-08 08:11:03 +01:00
bpp-phyl academic/bpp-phyl: Added (Bio++ Phylogenetic Library) 2022-09-08 08:11:03 +01:00
bpp-phyl-omics academic/bpp-phyl-omics: Added (Bio++ Phylogenetic Omics Library) 2022-09-08 08:11:04 +01:00
bpp-popgen academic/bpp-popgen: Added (Bio++ Population Genetics Library) 2022-09-08 08:11:04 +01:00
bpp-seq academic/bpp-seq: Added (Bio++ Sequence library) 2022-09-08 08:11:03 +01:00
bpp-seq-omics academic/bpp-seq-omics: Added (Bio++ Sequence Omics Library) 2022-09-08 08:11:03 +01:00
bpp1.9-numcalc academic/bpp1.9-numcalc: Added (Bio++ 1.9 NumCalc Library) 2022-09-09 02:55:53 +01:00
bpp1.9-phyl academic/bpp1.9-phyl: Added (Bio++ 1.9 Phyl Library) 2022-09-09 03:07:45 +01:00
bpp1.9-seq academic/bpp1.9-seq: Added (Bio++ 1.9 Seq Library) 2022-09-09 02:58:46 +01:00
bpp1.9-utils academic/bpp1.9-utils: Added (Bio++ 1.9 Utils Library) 2022-09-09 02:53:27 +01:00
bppsuite academic/bppsuite: Added (Bio++ program suite) 2022-09-08 08:11:04 +01:00
btf academic/btf: Change i486 to i586 2022-06-07 02:23:03 -04:00
bwa
cadabra2 academic/cadabra2: Updated for version 2.4.0.2. 2022-10-08 09:12:47 +07:00
CAFS_divergence
calc
calcoo various: Use zulu jdk builds for REQUIRES. 2022-03-03 15:56:51 +07:00
camd academic/camd: Change i486 to i586 2022-06-07 02:23:03 -04:00
cap3 academic/cap3: DOWLOAD updated. 2022-08-06 20:16:08 +07:00
CAPS_coevolution
cblas academic/cblas: Change i486 to i586 2022-06-07 02:23:03 -04:00
ccolamd academic/ccolamd: Change i486 to i586 2022-06-07 02:23:03 -04:00
cdo academic/cdo: Updated for version 2.0.4. 2022-02-17 12:59:54 +07:00
celestia academic/celestia: Wrap README at 72 columns. 2022-03-12 14:34:16 -05:00
chartgeany
chemtool academic/chemtool: Fix build failure with gcc10. 2022-02-21 02:41:03 -06:00
cholmod academic/cholmod: Change i486 to i586 2022-06-07 02:23:03 -04:00
cistrome-CEAS
cistrome-conductGO
cistrome-extra
cistrome-MACS academic/cistrome-MACS: Handle content-disposition download. 2022-03-05 00:18:21 +13:00
cistrome-mdseqpos
clark-ugene
cld2
clustalo academic/clustalo: Remove .la files. 2022-03-08 09:44:26 +07:00
clustalw
clustalx academic/clustalx: Updated to use qmake-qt5. BUILD bumped. 2022-08-06 20:16:07 +07:00
colamd academic/colamd: Change i486 to i586 2022-06-07 02:23:03 -04:00
colin academic/colin: Use qt4. 2022-02-27 22:29:05 -06:00
convertall academic/convertall: Fix docs. 2022-04-05 12:28:40 -04:00
copasi
cryptominisat
csparse academic/csparse: Change i486 to i586 2022-06-07 02:23:03 -04:00
cufflinks academic/cufflinks: Fix info file. 2022-03-12 11:26:42 +13:00
cutadapt
cvc4 various: Use zulu jdk builds for REQUIRES. 2022-03-03 15:56:51 +07:00
cxsparse academic/cxsparse: Change i486 to i586 2022-06-07 02:23:03 -04:00
dakota academic/dakota: Updated for version 6.16.0. 2022-07-30 11:26:22 +07:00
Data2FCS academic/Data2FCS: Use zulu-openjdk11. 2022-03-03 15:56:48 +07:00
datamash academic/datamash: Updated for version 1.8. 2022-09-04 04:44:58 +01:00
DendroPy academic/DendroPy: Updated for version 4.5.1. 2022-09-08 08:11:03 +01:00
diamond
ds9 academic/ds9: Wrap README at 72 columns. 2022-03-12 14:34:33 -05:00
easy_spice
ed-v6 academic/ed-v6: Fix github tarball handling. 2022-03-01 19:35:43 +07:00
edsim51di academic/edsim51di: Update DOWNLOAD to https. 2022-03-04 02:48:05 +00:00
EMBASSY academic/EMBASSY: Update binaries location. 2022-07-29 22:21:46 +07:00
EMBOSS academic/EMBOSS: Update binaries location. 2022-07-29 22:20:39 +07:00
engauge academic/engauge: Updated for version 12.1. 2022-02-27 22:29:05 -06:00
ent academic/ent: Update email address. 2022-06-08 12:25:40 -04:00
eprover
equalx academic/equalx: Update email address. 2022-06-08 12:25:40 -04:00
ess
evopedia_qt academic/evopedia_qt: Use qt4. 2022-02-27 22:29:05 -06:00
exonerate
extrema academic/extrema: Remove .la files. 2022-03-08 09:44:26 +07:00
fann academic/fann: Change i486 to i586 2022-06-07 02:23:03 -04:00
fastqc various: Use zulu jdk builds for REQUIRES. 2022-03-03 15:56:51 +07:00
FCSalyzer academic/FCSalyzer: Handle url-encoded filenames. 2022-03-05 00:17:45 +13:00
fet academic/fet: Updated for version 6.6.2. 2022-10-08 09:12:42 +07:00
fiji academic/fiji: Updated for version 20220414_1745. 2022-08-06 20:16:08 +07:00
finchtv
fityk academic/fityk: Fix wxPython/wxGTK3 conflict. 2022-03-09 17:20:43 +07:00
flann
flexbar
free42
FreeFem academic/FreeFem: Updated for version 4.11. 2022-04-24 01:47:24 +07:00
g3data academic/g3data: Update github tarball handling. 2022-03-01 19:35:44 +07:00
Gabedit academic/Gabedit: Install references. 2022-07-09 10:06:07 +07:00
galculator
gaw3
Gblocks academic/Gblocks: Fix download. 2022-02-27 22:29:06 -06:00
gchemutils academic/gchemutils: Fix typo in script. 2022-03-09 14:41:35 -05:00
gcompris-qt academic/gcompris-qt: Updated for version 2.4. 2022-04-24 01:47:19 +07:00
geda-gaf academic/geda-gaf: Remove .la files. 2022-03-08 09:44:26 +07:00
gelemental academic/gelemental: Remove .la files. 2022-03-08 09:44:27 +07:00
geneconv
genius academic/genius: Updated for version 1.0.27. 2022-02-27 22:29:05 -06:00
genometools academic/genometools: Updated for version 1.6.2. 2022-09-04 04:51:14 +01:00
genpak academic/genpak: Fix docs. 2022-04-09 15:45:11 +07:00
GeoGebra academic/GeoGebra: Use zulu-openjdk7. 2022-03-03 15:56:45 +07:00
geomview academic/geomview: Change i486 to i586 2022-06-07 02:23:03 -04:00
gerbv academic/gerbv: Remove .la files. 2022-03-08 09:44:27 +07:00
getdp academic/getdp: Updated for version 3.5.0. 2022-08-13 10:40:35 +07:00
getfem academic/getfem: Updated for version 5.4.2. 2022-08-13 10:40:35 +07:00
ggobi academic/ggobi: Updated for version 2.1.11. 2022-03-09 17:20:42 +07:00
ghemical academic/ghemical: Fix build. 2022-02-27 22:29:05 -06:00
glpk academic/glpk: Remove .la files. 2022-03-08 09:44:25 +07:00
gmsh academic/gmsh: Updated for version 4.10.5. 2022-08-13 10:40:35 +07:00
gnucap
gp2fasta academic/gp2fasta: Change i486 to i586 2022-06-07 02:23:03 -04:00
gpredict academic/gpredict: revert to latest stable version 2.2.1 2022-02-24 22:05:13 +07:00
grace academic/grace: Update download url. 2022-09-10 15:19:08 +07:00
gresistor academic/gresistor: Change i486 to i586 2022-06-07 02:23:03 -04:00
gretl academic/gretl: Remove .la files. 2022-03-08 09:44:27 +07:00
gri
Gridcoin-Research academic/Gridcoin-Research: Updated for version 5.4.0.0 2022-08-13 10:40:41 +07:00
gromacs academic/gromacs: Added (gromacs project) 2022-10-01 09:01:15 +07:00
grpn academic/grpn: Change i486 to i586 2022-06-07 02:23:03 -04:00
gspiceui
gtkwave academic/gtkwave: Updated for version 3.3.111. 2022-02-27 22:29:05 -06:00
gtypist academic/gtypist: Change i486 to i586 2022-06-07 02:23:04 -04:00
gwyddion academic/gwyddion: Updated for version 2.61. 2022-05-07 13:59:32 +07:00
h5utils
harminv academic/harminv: Remove .la files. 2022-03-08 09:44:27 +07:00
HMMER
hyphy academic/hyphy: Updated for version 2.5.41. 2022-09-08 08:11:03 +01:00
IGV academic/IGV: Updated for version 2.13.2. 2022-08-06 20:16:07 +07:00
io_lib academic/io_lib: Remove .la files. 2022-03-08 09:44:28 +07:00
iqtree academic/iqtree: Added (Efficient phylogenomic software by ML) 2022-09-09 04:23:03 +01:00
irsim
isoelectric-point academic/isoelectric-point: Change i486 to i586 2022-06-07 02:23:04 -04:00
iTest academic/iTest: Use qt4. 2022-02-27 22:29:06 -06:00
itex2mml
ITK
jalview academic/jalview: Updated for version 2.11.2.3. 2022-08-06 20:16:06 +07:00
jellyfish_k-mer academic/jellyfish_k-mer: Remove .la files. 2022-03-08 09:44:28 +07:00
jpicedt academic/jpicedt: Change i486 to i586 2022-06-07 02:23:04 -04:00
jugglinglab various: Use zulu jdk builds for REQUIRES. 2022-03-03 15:56:51 +07:00
karma academic/karma: Allow ARCH=i586 in environment. 2022-03-20 20:45:13 +07:00
kiwisolver
klavaro
klu academic/klu: Change i486 to i586 2022-06-07 02:23:04 -04:00
knime
kraken
Kst academic/Kst: Change i486 to i586 2022-06-07 02:23:02 -04:00
ktikz
kurso academic/kurso: x86 is unsupported. 2022-03-12 11:30:45 +13:00
labplot2 academic/labplot2: Updated for version 2.9.0. 2022-05-14 19:28:00 +07:00
ladr academic/ladr: Wrap README at 72 columns. 2022-03-12 14:35:24 -05:00
lalnview
lapack95
lapacke academic/lapacke: Change i486 to i586 2022-06-07 02:23:04 -04:00
latex2html
ldl academic/ldl: Change i486 to i586 2022-06-07 02:23:04 -04:00
libghemical academic/libghemical: Change i486 to i586 2022-06-07 02:23:04 -04:00
link-grammar academic/link-grammar: Change i486 to i586 2022-06-07 02:23:04 -04:00
locarna academic/locarna: Remove .la files. 2022-03-08 09:44:28 +07:00
lpsolve
mafft academic/mafft: Updated for version 7.505. 2022-09-08 08:11:03 +01:00
magic
mathics academic/mathics: Updated for version 4.0.0. 2022-04-02 18:19:15 +07:00
mathjax2 academic/mathjax2: Fix github tarball handling. 2022-03-01 19:35:44 +07:00
mathomatic academic/mathomatic: Change i486 to i586 2022-06-07 02:23:04 -04:00
matio academic/matio: Remove .la files. 2022-03-08 09:44:28 +07:00
maxima academic/maxima: Updated for version 5.46.0. 2022-10-08 09:12:41 +07:00
meep academic/meep: Remove .la files. 2022-03-08 09:44:28 +07:00
megax academic/megax: Updated for version 11.0.11_1. 2022-08-06 20:16:04 +07:00
meme-db-gomo
meme-db-motif academic/meme-db-motif: Updated for version 12.23. 2022-09-04 04:57:25 +01:00
meme-db-tgene
meme-suite academic/meme-suite: Updated for version 5.4.1. 2022-09-04 05:41:14 +01:00
mendeleydesktop academic/mendeleydesktop: Change i486 to i586 2022-06-07 02:23:04 -04:00
MetaPhlAn2
metis academic/metis: Change i486 to i586 2022-06-07 02:23:04 -04:00
mkDSSP
molequeue academic/molequeue: Updated for version 0.9.0. 2022-04-24 01:47:09 +07:00
mpb academic/mpb: Remove .la files. 2022-03-08 09:44:29 +07:00
mrbayes
mumsa academic/mumsa: Added (A tool to assess MSA quality) 2022-09-25 13:59:42 +07:00
muscle
ncbi-blast
ncbi-blast+ academic/ncbi-blast+: Updated for version 2.13.0. 2022-09-04 14:40:01 +01:00
ncbi-rmblastn academic/ncbi-rmblastn: Allow ARCH=i586 in environment. 2022-03-20 20:45:13 +07:00
nco academic/nco: Updated for version 5.1.0. 2022-07-17 06:40:12 +07:00
ncview
ngspice academic/ngspice: Updated for version 37. 2022-08-27 22:50:29 +07:00
novocraft
octave academic/octave: Updated for version 7.2.0 2022-09-25 13:59:52 +07:00
openboard academic/openboard: Updated for version 1.6.4. 2022-10-08 08:45:40 +07:00
OpenFOAM academic/OpenFOAM: Updated for version 10. 2022-07-29 22:50:17 +07:00
pal2nal
paml
pamlX academic/pamlX: Use qt4. 2022-02-27 22:29:06 -06:00
papi academic/papi: Updated for version 6.0.0.1. 2022-02-27 22:29:06 -06:00
pari
parmetis academic/parmetis: Change i486 to i586 2022-06-07 02:23:04 -04:00
patsy academic/patsy: Change i486 to i586 2022-06-07 02:23:04 -04:00
pcalc
pcb
perlprimer
petsc academic/petsc: Added (toolkit for scientific computation). 2022-04-24 01:47:24 +07:00
PhyML academic/PhyML: Updated for version 3.3.20220408. 2022-09-04 13:49:57 +01:00
pianobooster academic/pianobooster: Update email address. 2022-06-08 12:25:51 -04:00
plasmidomics
plus42 academic/plus42: Updated for version 1.0.11. 2022-10-08 09:12:42 +07:00
prank-msa academic/prank-msa: Added (probabilistic multiple alignment program) 2022-09-08 22:18:25 +01:00
primer3
pspp academic/pspp: Updated for version 1.4.1. 2022-02-27 22:29:06 -06:00
pulseview academic/pulseview: Updated for version 20220225_4efbe9b. 2022-02-27 22:29:06 -06:00
PyAMG academic/PyAMG: Change i486 to i586 2022-06-07 02:23:02 -04:00
pyCRAC academic/pyCRAC: Update MD5SUM. 2022-03-04 03:30:43 +00:00
pyfits academic/pyfits: Change i486 to i586 2022-06-07 02:23:04 -04:00
pysam academic/pysam: Updated for version 0.19.1. 2022-06-18 09:10:04 +07:00
qalculate-gtk
qcl
qhull
qrupdate academic/qrupdate: Change i486 to i586 2022-06-07 02:23:04 -04:00
qucs academic/qucs: Align to template. 2022-03-26 11:46:45 +13:00
R academic/R: Updated for version 4.2.1. 2022-07-09 10:06:13 +07:00
RAxML
rbio academic/rbio: Change i486 to i586 2022-06-07 02:23:04 -04:00
reduce-algebra
RepeatMasker
root academic/root: Actually install doinst.sh. 2022-03-17 12:38:15 -04:00
rpy2 academic/rpy2: Updated for version 3.5.3. 2022-08-20 10:06:34 +07:00
sage
sage-bin academic/sage-bin: Fix .info. 2022-05-28 09:11:22 +07:00
samtools academic/samtools: Updated to version 1.15.1 2022-04-16 12:12:48 +07:00
samtools-legacy
scidavis academic/scidavis: Updated for version 2.9.0. 2022-06-18 09:09:57 +07:00
scilab various: Use zulu jdk builds for REQUIRES. 2022-03-03 15:56:51 +07:00
scipy
scipy3 academic/scipy3: Updated for version 1.9.1. 2022-09-03 17:58:50 +07:00
seaview academic/seaview: Updated for version 5.0.5. 2022-09-04 14:49:33 +01:00
seqkit academic/seqkit: Updated for version 2.2.0. 2022-08-06 20:16:11 +07:00
SeqMonk academic/SeqMonk: Updated for version 1.48.1. 2022-08-06 20:16:13 +07:00
sequence-analysis academic/sequence-analysis: Use zulu-openjdk11. 2022-03-03 15:56:49 +07:00
Shark
sigrok-cli academic/sigrok-cli: Updated for version 20220222_525f481. 2022-03-01 19:35:46 +07:00
siril academic/siril: Fix VERSION. 2022-03-12 11:36:35 +13:00
smath-studio
snpEff academic/snpEff: Build cleanup. 2022-08-13 10:40:38 +07:00
solfege academic/solfege: Change i486 to i586 2022-06-07 02:23:04 -04:00
spades academic/spades: Updated for version 3.15.4. 2022-08-06 20:16:13 +07:00
speedcrunch
spiceopus academic/spiceopus: Change i486 to i586 2022-06-07 02:23:05 -04:00
spidey
spqr academic/spqr: Change i486 to i586 2022-06-07 02:23:05 -04:00
squizz academic/squizz: Remove .la files. 2022-03-08 09:44:29 +07:00
staden
STAR
stellarium
stellarsolver academic/stellarsolver: Added (Astrometric Plate Solver) 2022-08-20 10:06:38 +07:00
stringtie
SU2 academic/SU2: Mark as 64-bit only. 2022-03-26 01:20:12 +07:00
suitesparse academic/suitesparse: Updated for version 5.11.0 2022-04-09 15:46:03 +07:00
suitesparseconfig academic/suitesparseconfig: Change i486 to i586 2022-06-07 02:23:05 -04:00
sundials
sword academic/sword: Updated for version 1.9.0. 2022-04-16 12:12:42 +07:00
sword-data-kjv academic/sword-data-kjv: Updated for version 1.9.0_1. 2022-04-16 12:12:42 +07:00
t_coffee academic/t_coffee: Updated for version 13.45.58.c355d11. 2022-03-01 19:35:46 +07:00
tabix-legacy
tiemu
tilem academic/tilem: Fix for gcc >= 10.x. 2022-03-01 19:35:46 +07:00
tilem2
tkgate academic/tkgate: Change i486 to i586 2022-06-07 02:23:05 -04:00
topdraw
tophat academic/tophat: Use -std=c++14. 2022-03-03 09:38:11 +00:00
treebest-ensembl academic/treebest-ensembl: Wrap README at 72 columns. 2022-03-12 14:40:15 -05:00
TreeGraph academic/TreeGraph: Use zulu-openjdk11. 2022-03-03 15:56:48 +07:00
treeviewx
trfind
trimmomatic academic/trimmomatic: Use zulu-openjdk11. 2022-03-03 15:56:49 +07:00
tuxmath academic/tuxmath: Rename blits. Remove dupe lan player. 2022-03-04 09:46:12 +00:00
tuxtype2 academic/tuxtype2: Change i486 to i586 2022-06-07 02:23:05 -04:00
ucsc-blat
ugene academic/ugene: Updated for version 44.0. 2022-09-08 08:11:03 +01:00
umfpack academic/umfpack: Change i486 to i586 2022-06-07 02:23:05 -04:00
units academic/units: Updated for version 2.22 2022-09-10 15:19:08 +07:00
vCAPS_coevolution academic/vCAPS_coevolution: Added (Coevolution Analysis) 2022-09-09 03:10:09 +01:00
vcftools
verilator academic/verilator: Make slack-desc ASCII. 2022-03-17 12:38:15 -04:00
verilog academic/verilog: Updated for version 11.0. 2022-03-03 10:24:49 +00:00
veusz
ViennaRNA academic/ViennaRNA: Updated for version 2.5.1. 2022-06-18 09:10:06 +07:00
wehi-cellsymphony academic/wehi-cellsymphony: Use zulu-openjdk11. 2022-03-03 15:56:49 +07:00
wehi-deid academic/wehi-deid: Use zulu-openjdk11. 2022-03-03 15:56:49 +07:00
wehi-hackit academic/wehi-hackit: Use zulu-openjdk11. 2022-03-03 15:56:49 +07:00
wehi-weasel academic/wehi-weasel: Use zulu-openjdk11. 2022-03-03 15:56:48 +07:00
WEVOTE
wmcalc academic/wmcalc: Update email address. 2022-06-08 12:25:51 -04:00
WordNet academic/WordNet: Change i486 to i586 2022-06-07 02:23:02 -04:00
wxMaxima academic/wxMaxima: Fix github tarball handling. 2022-03-01 19:35:44 +07:00
x48 academic/x48: Added (HP48 Calculator emulator) 2022-04-30 13:51:49 +07:00
xcircuit academic/xcircuit: Change i486 to i586 2022-06-07 02:23:05 -04:00
xephem
xflr5 academic/xflr5: Updated for version 6.54. 2022-04-16 12:12:52 +07:00
xfoil
xiphos academic/xiphos: Fix build. 2022-04-16 12:12:49 +07:00
xoscope academic/xoscope: Change i486 to i586 2022-06-07 02:23:05 -04:00
xsimd academic/xsimd: Updated for version 9.0.1. 2022-09-03 17:58:50 +07:00
z3 academic/z3: Updated for version 4.11.2. 2022-10-08 09:12:54 +07:00
ZeGrapher
zotero academic/zotero: Updated for version 6.0.10. 2022-07-23 11:13:16 +07:00