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1185 commits

Author SHA1 Message Date
Kyle Guinn
32f81b1849 academic/csparse: Updated for version 3.1.4. 
Signed-off-by: Kyle Guinn <elyk03@gmail.com>
 2015-06-14 07:55:34 +07:00
Kyle Guinn
072895894c academic/ccolamd: Updated for version 2.9.1. 
Signed-off-by: Kyle Guinn <elyk03@gmail.com>
 2015-06-14 07:55:33 +07:00
Kyle Guinn
276f0bdade academic/colamd: Updated for version 2.9.1. 
Signed-off-by: Kyle Guinn <elyk03@gmail.com>
 2015-06-14 07:55:33 +07:00
Kyle Guinn
cdb637366c academic/camd: Updated for version 2.4.1. 
Signed-off-by: Kyle Guinn <elyk03@gmail.com>
 2015-06-14 07:55:33 +07:00
Kyle Guinn
0843dc2e27 academic/amd: Updated for version 2.4.1. 
Signed-off-by: Kyle Guinn <elyk03@gmail.com>
 2015-06-14 07:55:32 +07:00
Kyle Guinn
aec10984ce academic/suitesparseconfig: Updated for version 4.4.4. 
Signed-off-by: Kyle Guinn <elyk03@gmail.com>
 2015-06-14 07:55:32 +07:00
Kyle Guinn
2783a26a39 academic/metis: Fix potential linking problems. 
_LARGEFILE64_SOURCE should be unnecessary.  _FILE_OFFSET_BITS=64
does the real work to link to the 64-bit functions.

Don't abuse libtool's -version-info to make the library version
match the package version.  These do not necessarily correspond.

Remove the .la files; these are causing libtool to overlink.  This
should save you from needlessly rebuilding some dependent packages
in the future.

Signed-off-by: Kyle Guinn <elyk03@gmail.com>
 2015-06-14 07:55:32 +07:00
Kyle Guinn
0008ce81ce academic/arpack-ng: Updated for version 3.2.0. 
Signed-off-by: Kyle Guinn <elyk03@gmail.com>
 2015-06-14 07:55:31 +07:00
Daniil Bratashov
f5432c423d academic/wxmacmolplt: Updated for version 7.6. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-06-10 04:39:58 +07:00
R. S. Ananda Murthy
d74f6386b6 academic/GeoGebra: Updated for version 5.0.124.0. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-06-10 04:39:47 +07:00
Matteo Bernardini
6bb032be51 academic/GeoGebra: Fixed download link. 
Signed-off-by: Matteo Bernardini <ponce@slackbuilds.org>
 2015-06-07 22:10:07 +07:00
Glenn Becker
ef9ca32e17 academic/mendeleydesktop: Updated for version 1.13.8. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-06-07 21:42:16 +07:00
Glenn Becker
eaa47cffe8 academic/maxima: Updated for version 5.36.1. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-06-07 21:40:07 +07:00
R.S.Ananda Murthy
88f4189720 academic/fet: Updated for version 5.27.2. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-05-31 10:36:26 +07:00
Daniil Bratashov
77597c7c8a academic/gwyddion: Updated for version 2.41. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-05-31 10:36:17 +07:00
melikamp
616d180343 academic/R: Updated for version 3.2.0. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-05-20 21:26:04 +07:00
Willy Sudiarto Raharjo
b0592b0735 academic/sage: Updated for version 6.7. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-05-19 12:44:59 +07:00
Tim Dickson
d48ed5a261 academic/xiphos: Fix typo. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-05-17 06:45:18 +07:00
Fridrich von Stauffenberg
79ab84b9db academic/scilab: Updated for version 5.5.2. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-05-16 08:50:56 +07:00
Fellype do Nascimento
eebea12125 academic/veusz: Updated for version 1.23. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-05-13 23:07:40 +07:00
R.S.Ananda Murthy
d3ef6b11fd academic/fet: Updated for version 5.27.0. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-04-30 17:15:44 +07:00
Willy Sudiarto Raharjo
7d37793b76 academic/sword: Update EMAIL. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-04-25 04:00:12 +07:00
Tim Dickson
88292126ee academic/xiphos: Updated for version 4.0.2. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-04-24 23:20:33 +07:00
R. S. Ananda Murthy
8824b75b03 academic/gretl: Updated for version 1.10.1. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-04-24 23:10:35 +07:00
R. S. Ananda Murthy
eace351b01 academic/Mnemosyne: Updated for version 2.3.3. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-04-24 18:19:11 +07:00
R. S. Ananda Murthy
dfd03895d3 academic/GeoGebra: Updated for version 5.0.82.0. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-04-24 18:17:28 +07:00
Willy Sudiarto Raharjo
8cd4a335ad academic/sage: Update README. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-04-17 00:38:47 +07:00
Glenn Becker
3a3f813349 academic/maxima: commented out gzip of info file. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-04-17 00:38:46 +07:00
Ryan P.C. McQuen
081514ca22 academic/glpk: Updated for version 4.55. 
Signed-off-by: Ryan P.C. McQuen <ryan.q@linux.com>
 2015-04-12 10:07:04 +07:00
R. S. Ananda Murthy
97076984a0 academic/omlibraries: Updated for version svn20150410. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-04-11 22:41:11 +07:00
R. S. Ananda Murthy
de163eb822 academic/openmodelica: Updated for version svn25500. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-04-11 22:40:29 +07:00
Petar Petrov
d700c3eee3 academic/finchtv: Added (Brilliant Trace Viewer). 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-04-11 22:39:24 +07:00
Petar Petrov
fefd38f6b4 academic/zotero: Updated for version 4.0.26.3. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-04-11 18:29:41 +07:00
Petar Petrov
a92a15cd13 academic/tophat: Updated for version 2.0.14. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-04-11 18:29:02 +07:00
Petar Petrov
4593278358 academic/snpEff: Updated for version 4.1c. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-04-11 18:28:24 +07:00
Petar Petrov
92c071ede3 academic/pamlX: Updated for version 1.3.1. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-04-11 18:27:43 +07:00
Petar Petrov
0119205e38 academic/paml: Fixed CHECKSUM. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-04-11 18:27:02 +07:00
Petar Petrov
ae1847ce2a academic/mafft: Updated for version 7.220. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-04-11 18:26:14 +07:00
Petar Petrov
49488459de academic/ij-plugins-LOCI: Updated for version 5.1.0. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-04-11 18:25:31 +07:00
Petar Petrov
12e0f34760 academic/genometools: Updated for version 1.5.5. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-04-11 18:24:41 +07:00
Petar Petrov
465af7bca3 academic/fastqc: Updated for version 0.11.3. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-04-11 18:23:57 +07:00
Petar Petrov
10195076aa academic/cutadapt: Updated for version 1.8.1. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-04-11 18:22:46 +07:00
Petar Petrov
04b98e22e3 academic/bedtools: Updated for version 2.23.0. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-04-11 18:21:23 +07:00
Petar Petrov
3f5f2cea71 academic/aline: Add option to change row length. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-04-11 18:20:35 +07:00
Tim Dickson
08f6a82a7a academic/xiphos: Fix source. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-04-07 21:25:23 +07:00
R.S.Ananda Murthy
f62f19ede4 academic/fet: Updated for version 5.26.2. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-04-07 19:57:02 +07:00
Benjamin Trigona-Harany
02bb880349 academic/cld2: Fix md5sum. 
Signed-off-by: Benjamin Trigona-Harany <bosth@alumni.sfu.ca>
 2015-04-05 08:38:28 +07:00
Tim Dickson
5b7d255b27 academic/biblesync: Added (Bible Software Navigation Library). 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-04-03 20:50:28 +07:00
Tim Dickson
8c507d6258 academic/xiphos: Added (A bible study application). 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-04-03 20:50:02 +07:00
Tim Dickson
c43faaa585 academic/bibletime: Updated for version 2.10.1. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-03-28 02:22:09 +07:00
Tim Dickson
6b3552d817 academic/sword: Updated for version 1.7.4. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-03-28 02:22:09 +07:00
Tim Dickson
2148eccd8a academic/sword-data-kjv: Added (King James Version Bible). 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-03-28 02:22:08 +07:00
R. S. Ananda Murthy
6d787f0176 academic/GeoGebra: Updated for version 5.0.80.0. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-03-28 02:22:08 +07:00
Petar Petrov
98b0b1410b academic/zotero: Updated for version 4.0.26.2. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-03-27 15:29:16 +07:00
Petar Petrov
8128156941 academic/ugene: Updated for version 1.16.1. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-03-27 15:28:40 +07:00
Petar Petrov
3f04be71a0 academic/spades: Added (SPAdes Genome Assembler). 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-03-27 15:27:52 +07:00
Petar Petrov
4dec57226a academic/snpEff: Added (Genes toolbox). 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-03-27 08:23:46 +07:00
Petar Petrov
c58570189a academic/seaview: Updated for version 4.5.4. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-03-27 07:58:54 +07:00
Petar Petrov
25b5e0f230 academic/fastqc: Added (quality control tool). 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-03-27 07:57:59 +07:00
Petar Petrov
b58f460047 academic/cutadapt: Added (Trim adapters). 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-03-27 07:54:43 +07:00
Willy Sudiarto Raharjo
5abf9d2a76 academic/spatialite_gui: Removed APPROVED line. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-03-22 15:51:29 +07:00
Panagiotis Nikolaou
e9ad9ab3c9 academic/squizz: Fix MD5SUM. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-03-16 01:32:30 +07:00
Alexander Bruy
6f2e715c34 academic/TauDEM: Updated for version 5.2.0. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-03-16 00:09:22 +07:00
Alexander Bruy
080ea62570 academic/PyAMG: Added (Algebraic Multigrid Library). 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-03-15 23:32:08 +07:00
Alexander Bruy
cd28d017d3 academic/spatialite_gui: Added (GUI for SpatiaLite). 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-03-15 09:23:39 +07:00
Alexander Bruy
12d22d1945 academic/spatialite-tools: Updated for version 4.2.0. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-03-15 09:15:19 +07:00
R. S. Ananda Murthy
db80bc979d academic/Mnemosyne: Updated for version 2.3.2. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-03-15 07:34:46 +07:00
R. S. Ananda Murthy
72f4265222 academic/GeoGebra: Updated for version 5.0.72.0. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-03-14 16:44:28 +07:00
Charles E. Kauffman
6d204a3c37 academic/equalx: Added (equation editor). 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-03-12 22:28:03 +07:00
R. S. Ananda Murthy
f28d9a818c academic/GeoGebra: Updated for version 5.0.68.0. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-03-03 07:26:17 +07:00
R.S.Ananda Murthy
b6193084ea academic/fet: Updated for version 5.26.1. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-03-01 11:50:50 +07:00
Thiago Nascimento
27d4a7b86a academic/armadillo: Added (C++ linear algebra library). 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-02-28 11:16:30 +07:00
Willy Sudiarto Raharjo
a5c54619cd academic/gcompris: Updated for version 15.02. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-02-24 16:56:34 +07:00
R. S. Ananda Murthy
a8195ca862 academic/omlibraries: Updated for version svn20150221. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-02-24 06:34:43 +07:00
R. S. Ananda Murthy
b96ae94ba1 academic/openmodelica: Updated for version svn24695. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-02-24 06:33:36 +07:00
Kyle Guinn
a5e1c5c82a academic/xoscope: Updated for version 2.1. 
Signed-off-by: Kyle Guinn <elyk03@gmail.com>
 2015-02-21 09:03:58 +07:00
Willy Sudiarto Raharjo
2b9473f833 academic/sage: Updated for version 6.5. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-02-19 18:22:48 +07:00
R. S. Ananda Murthy
4c9b811268 academic/patsy: Added (statistical models). 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-02-14 15:46:11 +07:00
R. S. Ananda Murthy
0777fb3368 academic/Mnemosyne: Updated for version 2.3.1. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-02-11 18:57:34 +07:00
R. S. Ananda Murthy
d3ab987da7 academic/GeoGebra: Updated for version 5.0.62.0. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-02-09 21:21:47 +07:00
Daniil Bratashov
1c7550c1a0 academic/gwyddion: Updated for version 2.40. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-02-09 00:14:57 +07:00
Petar Petrov
19d870803c academic/seaview: Updated for version 4.5.3.4. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-02-05 06:47:44 +07:00
Petar Petrov
ad590dfd87 academic/zotero: Updated for version 4.0.25.2. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-02-05 06:31:10 +07:00
Petar Petrov
ab23379524 academic/vcftools: Updated for version 0.1.12b. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-02-05 06:31:09 +07:00
Petar Petrov
7b29b771ab academic/ugene: Updated for version 1.15.1. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-02-05 06:31:09 +07:00
Petar Petrov
a2cdd781cc academic/tophat: Updated for version 2.0.13. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-02-05 06:31:09 +07:00
Petar Petrov
c7b5f68ad5 academic/staden: Fix build against tklib 0.6. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-02-05 06:31:08 +07:00
Petar Petrov
f5d420b2c1 academic/spidey: Added x86_64 source. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-02-05 06:31:08 +07:00
Petar Petrov
f19056b3ef academic/paml: Fixed MD5SUM. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-02-05 06:31:08 +07:00
Petar Petrov
b0e1f1a99e academic/ncbi-blast-plus: Updated for version 2.2.30. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-02-05 06:31:07 +07:00
Petar Petrov
4825ef51fc academic/mrbayes: Updated for version 3.2.4. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-02-05 06:31:07 +07:00
Petar Petrov
24bdcd7dda academic/mafft: Updated for version 7.215. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-02-05 06:31:06 +07:00
Petar Petrov
36c8becab8 academic/jalview: Updated for version 2.8.2. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-02-05 06:31:06 +07:00
Petar Petrov
dadca948a1 academic/ij-plugins-LOCI: Updated for version 5.0.6. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-02-05 06:31:06 +07:00
Petar Petrov
4c948ac76a academic/genometools: Updated for version 1.5.4. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-02-05 06:31:05 +07:00
Petar Petrov
db4d842e11 academic/gchemutils: Updated for version 0.14.10. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-02-05 06:31:05 +07:00
Petar Petrov
d73dde8e0b academic/bwa: Updated for version 0.7.12. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-02-05 06:31:05 +07:00
Petar Petrov
583aff01e1 academic/bedtools: Updated for version 2.22.1. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-02-05 06:31:04 +07:00
Petar Petrov
c8bd220ce2 academic/archeopteryx: Updated for version 0.9901_beta. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-02-05 06:31:04 +07:00
R.S.Ananda Murthy
3102946105 academic/fet: Updated for version 5.26.0. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2015-02-02 00:56:40 +07:00