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3721 commits

Author SHA1 Message Date
ArTourter
fac047ea05
academic/cdo: Updated for version 2.3.0. 
Signed-off-by: ArTourter <artourter@gmail.com>
Signed-off-by: Andrew Clemons <andrew.clemons@gmail.com>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2023-10-21 17:20:14 +07:00
Willy Sudiarto Raharjo
559f543032
academic/python3-scipy: Fix dep. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2023-10-20 15:43:06 +07:00
R.S.Ananda Murthy
595a42c067
academic/fet: Updated for version 6.9.7. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2023-10-19 13:45:04 +07:00
Willy Sudiarto Raharjo
ea159bae27
academic/python3-scipy: Add OpenBLAS as dep. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2023-10-16 01:19:43 +07:00
Andrew Clemons
e4fed52ac0
academic/python3-scipy: Add missing python3-mesonpy dependency. 
Signed-off-by: Andrew Clemons <andrew.clemons@gmail.com>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2023-10-16 01:19:43 +07:00
Petar Petrov
1e58ca0f61
academic/ncbi-edirect: Updated for version 20.5.20231007. 
Signed-off-by: Andrew Clemons <andrew.clemons@gmail.com>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2023-10-14 10:32:26 +07:00
Jeremy Hansen
7481647c8c
academic/python3-scipy: Version bump to 1.11.3 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2023-10-14 09:08:40 +07:00
brobr
95fcd35825
academic/ViennaRNA: upgrade to version 2.6.4; edit README 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2023-10-10 06:34:40 +07:00
brobr
47954aace3
academic/ViennaRNA: Update script. 
Enable RNAxplorer, needs setting which blas is used to compile
lapack(e), see README and ViennaRNA.SlackBuild

Signed-off-by: Andrew Clemons <andrew.clemons@gmail.com>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2023-10-07 15:58:38 +07:00
R.S.Ananda Murthy
97c6f6c024
academic/fet: Updated for version 6.9.6. 
Signed-off-by: Andrew Clemons <andrew.clemons@gmail.com>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2023-10-07 15:58:33 +07:00
cduston44
78c56d2ab1 academic/sage: Updated for 10.1 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2023-09-29 10:35:53 +07:00
Andrew Clemons
8a3b44b780
academic/SU2: Add network warning to README. 
Signed-off-by: Andrew Clemons <andrew.clemons@gmail.com>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2023-09-23 11:33:27 +07:00
Jeremy Hansen
5e7ffcb6fe
academic/python3-scipy: Correct email 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2023-09-23 11:00:00 +07:00
Jeremy Hansen
6569d72516
academic/xsimd: Correct email and clean up SlackBuild 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2023-09-23 10:59:55 +07:00
ArTourter
eb61f9270e
academic/nco: Updated for version 5.1.8. 
Signed-off-by: ArTourter <artourter@gmail.com>
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2023-09-23 08:42:58 +07:00
Giancarlo Dessi
fd6d13d8b1
academic/gaiasky: Updated for version 3.5.3. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2023-09-23 08:42:57 +07:00
Petar Petrov
3e0f2ef5f4
academic/wise: Update script. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2023-09-23 08:42:56 +07:00
Petar Petrov
42f43bfbab
academic/seqkit: Updated for version 2.5.1. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2023-09-23 08:42:56 +07:00
brobr
817dff3ca5
academic/STAR:Upgrade to version 2.7.11a 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2023-09-23 08:31:13 +07:00
brobr
a0ff841952
academic/ViennaRNA: Upgrade to version 2.6.3 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2023-09-23 08:31:13 +07:00
brobr
c084babcc4
academic/samtools: Upgrade to version 1.18 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2023-09-23 08:31:12 +07:00
brobr
cd17b2f292
academic/rpy2: Upgrade to version 3.5.14 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2023-09-23 08:31:12 +07:00
brobr
8a052f2011
academic/pysam: set to use internal htslib 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2023-09-23 08:31:12 +07:00
brobr
6bb11f8730
academic/bcftools: Upgrade to version 1.18 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2023-09-23 08:31:12 +07:00
brobr
c797ef064d
academic/fastqc: cleanup doinst.sh, info updated 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2023-09-23 08:31:12 +07:00
Petar Petrov
670cb9aa4c
academic/ncbi-edirect: Added (Entrez Direct cli utilities). 
Signed-off-by: Andrew Clemons <andrew.clemons@gmail.com>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2023-09-17 00:10:24 +07:00
Petar Petrov
7d78eb2252
academic/g3data: Fix DOWNLOAD. 
Signed-off-by: Andrew Clemons <andrew.clemons@gmail.com>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2023-09-17 00:10:23 +07:00
Petar Petrov
529d47241a
academic/RepeatMasker: Updated for version 4.1.5. 
Signed-off-by: Andrew Clemons <andrew.clemons@gmail.com>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2023-09-17 00:10:17 +07:00
Petar Petrov
907b85818e
academic/jalview: Updated for version 2.11.2.7. 
Signed-off-by: Andrew Clemons <andrew.clemons@gmail.com>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2023-09-17 00:10:16 +07:00
Petar Petrov
ba310bcb48
academic/IGV: Updated for version 2.16.2. 
Signed-off-by: Andrew Clemons <andrew.clemons@gmail.com>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2023-09-17 00:10:15 +07:00
Petar Petrov
da7369ac9c
academic/fiji: Updated for version 20230801_1717. 
Signed-off-by: Andrew Clemons <andrew.clemons@gmail.com>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2023-09-17 00:10:15 +07:00
Petar Petrov
13ba12b07d
academic/wehi-weasel: Updated for version 3.8.0.18. 
Signed-off-by: Andrew Clemons <andrew.clemons@gmail.com>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2023-09-17 00:10:15 +07:00
Petar Petrov
e53b8b3d71
academic/ugene: Updated for version 48.1. 
Signed-off-by: Andrew Clemons <andrew.clemons@gmail.com>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2023-09-17 00:10:15 +07:00
Petar Petrov
c5221254ba
academic/HMMER: Updated for version 3.4. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2023-09-13 21:53:45 +07:00
Petar Petrov
06de67c73f
academic/iqtree: Updated for version 2.2.2.7. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2023-09-13 21:53:07 +07:00
Petar Petrov
e5ca96d34b
academic/ncbi-blast+: Updated for version 2.14.1. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2023-09-13 21:52:06 +07:00
Petar Petrov
1aabc64ed3
academic/meme-suite: Updated for version 5.5.4. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2023-09-13 21:51:25 +07:00
Petar Petrov
1b4ad6d867
academic/Gblocks: Update script. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2023-09-13 21:34:07 +07:00
Petar Petrov
b95a3fae6d
academic/cistrome-MACS: update source. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2023-09-11 22:18:50 +07:00
Petar Petrov
f53c74c824
academic/topdraw: update source. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2023-09-11 22:18:50 +07:00
Petar Petrov
0aee41af6c
academic/aline: update source. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2023-09-11 22:18:50 +07:00
Petar Petrov
0dbe419cac
academic/treeviewx: update source. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2023-09-11 22:18:50 +07:00
Petar Petrov
5aa58a3eda
academic/sim: Added (local similarity program). 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2023-09-11 22:18:38 +07:00
Petar Petrov
f2352ec412 academic/FastTree: Added (Infers approximately-ML phylogenetic). 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2023-09-11 15:05:54 +07:00
Petar Petrov
ba3dffbd5e academic/kalign: Added (multipelsquence alignment program). 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2023-09-11 14:39:00 +07:00
Petar Petrov
59e0202f1a games/wise: Added (Compare protein to DNA sequence). 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2023-09-11 14:33:50 +07:00
Petar Petrov
e3b889a097 academic/FigTree: Add (A graphical viewer of phylogenetic trees). 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2023-09-11 14:31:54 +07:00
Alexander Verbovetsky
c657016ea1
academic/cadabra2: Updated for version 2.4.4. 
Signed-off-by: Andrew Clemons <andrew.clemons@gmail.com>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2023-09-09 10:14:14 +07:00
Alexander Verbovetsky
a8a3b44ad7
academic/WolframEngine: Updated for version 13.3.0. 
Signed-off-by: Andrew Clemons <andrew.clemons@gmail.com>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2023-09-09 10:14:14 +07:00
Giancarlo Dessi
469fecd964
academic/lammps: Added (molecular simulator). 
Signed-off-by: Andrew Clemons <andrew.clemons@gmail.com>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2023-09-03 09:37:13 +07:00