ArTourter 6e36231243 academic/nco: Updated for version 5.1.9. ... Signed-off-by: ArTourter <artourter@gmail.com> Signed-off-by: Andrew Clemons <andrew.clemons@gmail.com> Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>		2023-11-11 08:08:33 +07:00
..
3D-ICE
abntex
acl2	academic/acl2: Added (Computational Logic for LiSP).	2023-07-18 09:31:16 +07:00
aenig4
aeskulap
aline	academic/aline: update source.	2023-09-11 22:18:50 +07:00
aliview
AlphaPlot
amd	academic/amd: Align with template.	2023-05-20 11:17:28 +07:00
amplicon
amplifx	academic/amplifx: Fix ARCH section.	2023-05-20 11:17:57 +07:00
antiprism
archaeopteryx
aris
arka
armadillo
arpack
arpack-ng	academic/arpack-ng: Updated for version 3.9.0	2023-08-19 09:15:34 +07:00
artha
avl
avogadroapp	academic/avogadroapp: Update README.	2023-11-06 06:10:13 +07:00
avogadrolibs	academic/avogadrolibs: Update README.	2023-11-06 06:09:03 +07:00
bcftools	academic/bcftools: Upgrade to version 1.18	2023-09-23 08:31:12 +07:00
bedGraphToBigWig
bedtools	academic/bedtools: Updated for version 2.31.0.	2023-06-20 19:46:04 +07:00
biblesync
bibletime
bibus
biopython
boinc
bowtie
bowtie2	academic/bowtie2: upgrade to version 2.5.2	2023-11-08 00:00:31 +07:00
bowtie2-legacy
bpp-core
bpp-phyl
bpp-phyl-omics
bpp-popgen
bpp-seq
bpp-seq-omics
bpp1.9-numcalc
bpp1.9-phyl
bpp1.9-seq
bpp1.9-utils
bppsuite
btf	academic/btf: Align with template.	2023-05-20 11:17:28 +07:00
bwa
cadabra2	academic/cadabra2: Updated for version 2.4.4.	2023-09-09 10:14:14 +07:00
CAFS_divergence	academic/CAFS_divergence: Fix ARCH section.	2023-05-20 11:17:57 +07:00
calc	academic/calc: Updated for version 2.14.1.5.	2023-05-27 08:08:51 +07:00
calcoo
camd	academic/camd: Align with template.	2023-05-20 11:17:28 +07:00
cap3
CAPS_coevolution	academic/CAPS_coevolution: Fix ARCH section.	2023-05-20 11:17:57 +07:00
cblas	academic/cblas: Align with template.	2023-05-20 11:17:28 +07:00
ccolamd	academic/ccolamd: Align with template.	2023-05-20 11:17:29 +07:00
cdo	academic/cdo: Updated for version 2.3.0.	2023-10-21 17:20:14 +07:00
celestia
chartgeany
chemtool
cholmod	academic/cholmod: Align with template.	2023-05-20 11:17:29 +07:00
cistrome-CEAS
cistrome-conductGO
cistrome-extra
cistrome-MACS	academic/cistrome-MACS: update source.	2023-09-11 22:18:50 +07:00
cistrome-mdseqpos
clark-ugene
cld2
clustalo
clustalw
clustalx
colamd	academic/colamd: Align with template.	2023-05-20 11:17:29 +07:00
colin	academic/colin: Use template TMP assignment.	2023-05-20 11:17:27 +07:00
convertall
copasi	academic/copasi: Updated for version 4.40.278.	2023-06-10 14:01:22 +07:00
cryptominisat
csparse	academic/csparse: Align with template.	2023-05-20 11:17:29 +07:00
cufflinks
cutadapt
cvc4
cxsparse	academic/cxsparse: Align with template.	2023-05-20 11:17:29 +07:00
dakota
Data2FCS
datamash
DendroPy
diamond
dimod
DRAMPower
DRAMSim2
DRAMsim3
DRAMSys
ds9
dwave-cloud-client
dwave-greedy
dwave-hybrid
dwave-inspector
dwave-neal
dwave-networkx
dwave-ocean-sdk
dwave-preprocessing
dwave-system
dwave-tabu
dwavebinarycsp
easy_spice
ed-v6
edsim51di
elk
EMBASSY
EMBOSS
engauge
ent
ephem	academic/ephem: Added (an astronomy program).	2023-08-12 09:46:19 +09:00
eprover
equalx
ess
evopedia_qt
exonerate
extrema
fann
fastqc	academic/fastqc: cleanup doinst.sh, info updated	2023-09-23 08:31:12 +07:00
FastTree	academic/FastTree: Added (Infers approximately-ML phylogenetic).	2023-09-11 15:05:54 +07:00
FCSalyzer
fet	academic/fet: Updated for version 6.11.1.	2023-11-04 16:39:17 +07:00
FigTree	academic/FigTree: Add (A graphical viewer of phylogenetic trees).	2023-09-11 14:31:54 +07:00
fiji	academic/fiji: Updated for version 20230801_1717.	2023-09-17 00:10:15 +07:00
finchtv	academic/finchtv: Fix ARCH section.	2023-05-20 11:17:56 +07:00
fityk
flann
flexbar	academic/flexbar: incl. patches for newer tbb	2023-11-08 00:02:01 +07:00
free42
FreeFem	academic/FreeFem: Fix MD5SUM.	2023-07-08 16:41:49 +07:00
g3data	academic/g3data: Fix DOWNLOAD.	2023-09-17 00:10:23 +07:00
Gabedit
gaiasky	academic/gaiasky: Updated for version 3.5.7.	2023-11-11 08:07:55 +07:00
galculator
gaw3
Gblocks	academic/Gblocks: Update script.	2023-09-13 21:34:07 +07:00
gchemutils
gcompris-qt	academic/gcompris-qt: Updated for version 3.3.	2023-06-10 09:28:37 +07:00
geda-gaf
gelemental
gem5
geneconv
genius
genometools
genpak
GeoGebra
geomview
gephi	academic/gephi: Added (Open Graph Viz Platform).	2023-07-19 10:00:21 +07:00
gerbv
getdp
getfem
ggobi
ghemical
glpk
glvis
gmsh
gnucap
gp2fasta
gpredict
grace
gresistor	academic/gresistor: Align with template.	2023-05-20 11:17:29 +07:00
gretl
gri
Gridcoin-Research
gromacs
grpn
gspiceui	academic/gspiceui: Updated for version 1.2.87.	2023-06-03 10:38:23 +07:00
gtkwave
gtypist
gwyddion	academic/gwyddion: Updated for version 2.64.	2023-11-04 16:39:16 +07:00
h5utils
harminv
HMMER	academic/HMMER: Updated for version 3.4.	2023-09-13 21:53:45 +07:00
hyphy
IGV	academic/IGV: Updated for version 2.16.2.	2023-09-17 00:10:15 +07:00
io_lib
iqtree	academic/iqtree: Updated for version 2.2.2.7.	2023-09-13 21:53:07 +07:00
irsim
Isabelle	academic/Isabelle: Added (proof assistant).	2023-07-18 08:47:19 +07:00
isoelectric-point
iTest
itex2mml
ITK
jalview	academic/jalview: Updated for version 2.11.2.7.	2023-09-17 00:10:16 +07:00
jellyfish_k-mer
jpicedt
jugglinglab
kalign	academic/kalign: Added (multipelsquence alignment program).	2023-09-11 14:39:00 +07:00
karma
klavaro
klu	academic/klu: Align with template.	2023-05-20 11:17:29 +07:00
knime
kraken
Kst
ktikz
kurso
labplot2	academic/labplot2: Fix double compilation.	2023-08-19 09:15:16 +07:00
ladr
laghos
lalnview
lammps	academic/lammps: Added (molecular simulator).	2023-09-03 09:37:13 +07:00
lapack95
lapacke	academic/lapacke: Align with template.	2023-05-20 11:17:30 +07:00
latex2html
ldl	academic/ldl: Align with template.	2023-05-20 11:17:30 +07:00
libghemical
link-grammar
locarna
lpsolve
mafft
magic
mathics
mathjax2	academic/mathjax2: Update maintainer's email	2023-06-04 23:13:23 +07:00
mathomatic
matio
maxima	academic/maxima: Updated for version 5.47.0.	2023-07-02 21:01:11 +07:00
meep	academic/meep: Fix 32bit build.	2023-07-22 15:52:46 +07:00
megax	academic/megax: Fix and mv ARCH sect.	2023-05-20 11:17:56 +07:00
meme-db-gomo
meme-db-motif
meme-db-tgene
meme-suite	academic/meme-suite: Updated for version 5.5.4.	2023-09-13 21:51:25 +07:00
mendeleydesktop	academic/mendeleydesktop: Fix ARCH.	2023-06-03 10:38:30 +07:00
metalwalls
MetaPhlAn2
metis	academic/metis: Align with template.	2023-05-20 11:17:30 +07:00
mfem
minorminer
mkDSSP
molequeue
mpb
mrbayes
mumsa
muscle
muscle5
ncbi-blast	academic/ncbi-blast: Fix and mv ARCH sect.	2023-05-20 11:17:56 +07:00
ncbi-blast+	academic/ncbi-blast+: Updated for version 2.14.1.	2023-09-13 21:52:06 +07:00
ncbi-edirect	academic/ncbi-edirect: Updated for version 20.5.20231007.	2023-10-14 10:32:26 +07:00
ncbi-rmblastn
nco	academic/nco: Updated for version 5.1.9.	2023-11-11 08:08:33 +07:00
ncview
ngspice	academic/ngspice: Updated for version 41.	2023-08-19 09:15:20 +07:00
novocraft
NWChem
octave	academic/octave: Updated for version 8.3.0	2023-08-19 09:15:33 +07:00
openboard
OpenFOAM
OpenMM
OpenVSP
pal2nal
paml
pamlX
papi
pari
parmetis
patsy
pcalc
pcb
penaltymodel
perlprimer
petsc
PhyML
pianobooster
plasmidomics
plus42	academic/plus42: Updated for version 1.0.21.	2023-08-26 19:07:00 +07:00
pomoxis
prank-msa
primer3	academic/primer3: Updated for version 2.6.1.	2023-06-20 19:52:38 +07:00
pspp
pulseview
PyAMG
pyCRAC
pyfits	academic/pyfits: Align with template.	2023-05-20 11:17:27 +07:00
pysam	academic/pysam: set to use internal htslib	2023-09-23 08:31:12 +07:00
python2-kiwisolver	academic/python2-kiwisolver: Align with template.	2023-05-20 11:17:41 +07:00
python2-scipy	academic/python2-scipy: Align with template.	2023-05-20 11:17:41 +07:00
python3-ase
python3-scipy	academic/python3-scipy: Fix dep.	2023-10-20 15:43:06 +07:00
qalculate-gtk
qcl
qhull
qrupdate	academic/qrupdate: Align with template.	2023-05-20 11:17:30 +07:00
qucs
qucs-s	academic/qucs-s: Updated for version 2.1.0.	2023-10-28 09:21:03 +07:00
R	academic/R: Updated for version 4.3.1.	2023-07-02 23:21:19 +07:00
ramulator
RAxML
rbio	academic/rbio: Align with template.	2023-05-20 11:17:27 +07:00
reduce-algebra
RepeatMasker	academic/RepeatMasker: Updated for version 4.1.5.	2023-09-17 00:10:17 +07:00
root	academic/root: Updated for v6.28.08	2023-11-04 16:39:16 +07:00
rpy2	academic/rpy2: Upgrade to version 3.5.14	2023-09-23 08:31:12 +07:00
sage	academic/sage: Updated for 10.1	2023-09-29 10:35:53 +07:00
sage-bin
samtools	academic/samtools: Upgrade to version 1.18	2023-09-23 08:31:12 +07:00
samtools-legacy
scidavis
scilab
seaview
seqkit	academic/seqkit: Updated for version 2.5.1.	2023-09-23 08:42:56 +07:00
SeqMonk
sequence-analysis
Shark
sigrok-cli
sim	academic/sim: Added (local similarity program).	2023-09-11 22:18:38 +07:00
SimEng
siril
smath-studio
snpEff
solfege
spades
speedcrunch
spiceopus
spidey	academic/spidey: Fix and mv ARCH sect.	2023-05-20 11:17:56 +07:00
spqr	academic/spqr: Align with template.	2023-05-20 11:17:30 +07:00
squizz
staden
STAR	academic/STAR:Upgrade to version 2.7.11a	2023-09-23 08:31:13 +07:00
stellarium
stellarsolver
stringtie
SU2	academic/SU2: Add network warning to README.	2023-09-23 11:33:27 +07:00
suitesparse	academic/suitesparse: Updated for version 5.13.0	2023-07-02 23:21:23 +07:00
suitesparseconfig	academic/suitesparseconfig: Align with template.	2023-05-20 11:17:30 +07:00
sundials
sword
sword-data-kjv	academic/sword-data-kjv: Updated for version 1.9.0_2.	2023-07-29 08:13:30 +07:00
t_coffee
tabix-legacy
tiemu
tilem
tilem2
tkgate
topdraw	academic/topdraw: update source.	2023-09-11 22:18:50 +07:00
tophat
treebest-ensembl
TreeGraph
treerecs
treeviewx	academic/treeviewx: update source.	2023-09-11 22:18:50 +07:00
trfind
trimmomatic
tuxmath
tuxtype2
ucsc-blat	academic/ucsc-blat: Fix and mv ARCH sect, http->https.	2023-05-20 11:17:56 +07:00
ugene	academic/ugene: Updated for version 48.1.	2023-09-17 00:10:15 +07:00
umfpack	academic/umfpack: Align with template.	2023-05-20 11:17:31 +07:00
units	academic/units: Fix paths and run install-info	2023-08-05 10:08:41 +07:00
vCAPS_coevolution
vcftools
velocyto
verilator
verilog
veusz
ViennaRNA	academic/ViennaRNA: upgrade to version 2.6.4; edit README	2023-10-10 06:34:40 +07:00
voro++
wehi-cellsymphony
wehi-deid
wehi-hackit
wehi-weasel	academic/wehi-weasel: Updated for version 3.8.0.18.	2023-09-17 00:10:15 +07:00
WEVOTE
wise	academic/wise: Update script.	2023-09-23 08:42:56 +07:00
wmcalc
WolframEngine	academic/WolframEngine: Updated for version 13.3.0.	2023-09-09 10:14:14 +07:00
WordNet
wxMaxima	academic/wxMaxima: Use DESTDIR properly.	2023-07-08 16:41:57 +07:00
x48
xcircuit
xephem	academic/xephem: Updated for version 4.1.0.	2023-08-12 09:42:58 +09:00
xflr5
xfoil
xiphos
xoscope	academic/xoscope: Align with template.	2023-05-20 11:17:31 +07:00
xsimd	academic/xsimd: Correct email and clean up SlackBuild	2023-09-23 10:59:55 +07:00
yices2
z3
ZeGrapher
zotero
zotero-gtk2