slackbuilds_ponce/academic
Lenard Spencer 14ce70432a
academic/OpenVSP: Updated for version 3.35.3.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2024-06-15 07:37:49 +07:00
..
3D-ICE academic/3D-ICE: Added (Thermal Emulator Library). 2022-12-03 11:30:33 +07:00
abntex
acl2 academic/acl2: Added (Computational Logic for LiSP). 2023-07-18 09:31:16 +07:00
aenig4
aeskulap
aline academic/aline: update source. 2023-09-11 22:18:50 +07:00
aliview
AlphaPlot
amd academic/amd: Align with template. 2023-05-20 11:17:28 +07:00
amplicon
amplifx academic/amplifx: Fix ARCH section. 2023-05-20 11:17:57 +07:00
antiprism
archaeopteryx
aris
arka
armadillo
arpack
arpack-ng academic/arpack-ng: Updated for version 3.9.1 2024-01-13 07:14:25 +07:00
artha
AstroImageJ academic/AstroImageJ: Update to 5.3.2.00 2024-01-22 09:40:26 +07:00
avl
avogadroapp academic/avogadroapp: Update README. 2023-11-06 06:10:13 +07:00
avogadrolibs academic/avogadrolibs: Update README. 2023-11-06 06:09:03 +07:00
bcftools academic/bcftools 2024-05-04 21:45:02 +07:00
bedGraphToBigWig
bedtools academic/bedtools: Updated for version 2.31.0. 2023-06-20 19:46:04 +07:00
biblesync
bibletime
bibus
biopython academic/biopython: Updated for version 1.81. 2023-04-22 11:38:31 +07:00
boinc academic/boinc: Updated for version 7.24.1 2024-01-20 09:16:23 +07:00
bowtie
bowtie2 academic/bowtie2: Upgrade to version 2.5.3 2024-01-22 09:39:38 +07:00
bowtie2-legacy
bpp-core
bpp-phyl
bpp-phyl-omics
bpp-popgen
bpp-seq
bpp-seq-omics
bpp1.9-numcalc
bpp1.9-phyl
bpp1.9-seq
bpp1.9-utils
bppsuite academic/bppsuite: Fix redundant deps. 2023-12-22 07:59:38 +07:00
btf academic/btf: Align with template. 2023-05-20 11:17:28 +07:00
bwa
cadabra2 academic/cadabra2: Update dep. 2024-06-01 00:46:57 +07:00
CAFS_divergence academic/CAFS_divergence: Fix ARCH section. 2023-05-20 11:17:57 +07:00
calc academic/calc: Updated for version 2.14.1.5. 2023-05-27 08:08:51 +07:00
calcoo
camd academic/camd: Align with template. 2023-05-20 11:17:28 +07:00
cap3
CAPS_coevolution academic/CAPS_coevolution: Fix ARCH section. 2023-05-20 11:17:57 +07:00
cblas academic/cblas: Updated for version 3.12.0 2024-01-13 07:14:25 +07:00
ccolamd academic/ccolamd: Align with template. 2023-05-20 11:17:29 +07:00
cdo academic/cdo: Updated for version 2.4.1. 2024-05-27 14:04:24 +07:00
celestia
chartgeany
chemtool
cholmod academic/cholmod: Fix redundant deps. 2023-12-22 07:59:38 +07:00
cistrome-CEAS
cistrome-conductGO
cistrome-extra
cistrome-MACS academic/cistrome-MACS: update source. 2023-09-11 22:18:50 +07:00
cistrome-mdseqpos academic/cistrome-mdseqpos: Fix deps. 2022-11-12 22:33:12 +07:00
clark-ugene
cld2
clustalo
clustalw
clustalx
colamd academic/colamd: Align with template. 2023-05-20 11:17:29 +07:00
colin academic/colin: Use template TMP assignment. 2023-05-20 11:17:27 +07:00
convertall
copasi academic/copasi: Updated for version 4.43.288. 2024-05-04 21:45:12 +07:00
cryptominisat academic/cryptominisat: Fix build. 2024-03-24 17:43:58 +07:00
csparse academic/csparse: Align with template. 2023-05-20 11:17:29 +07:00
cufflinks
cutadapt
cvc4 academic/cvc4: Update dependencies. 2023-12-02 07:54:23 +07:00
cxsparse academic/cxsparse: Align with template. 2023-05-20 11:17:29 +07:00
dakota academic/dakota: Fix redundant deps. 2023-12-22 07:59:38 +07:00
Data2FCS
datamash
DendroPy
diamond
dimod academic/dimod: Added (A shared API for samplers) 2022-11-12 22:32:58 +07:00
DRAMPower academic/DRAMPower: Fix github tarball handling. 2022-11-26 09:11:46 +07:00
DRAMSim2
DRAMsim3 academic/DRAMsim3: Fix github tarball handling. 2022-11-05 21:15:16 +07:00
DRAMSys academic/DRAMSys: Fix github tarball handling. 2023-01-07 08:13:28 +07:00
ds9 academic/ds9: Updated for version 8.4.1. 2023-02-04 07:19:56 +07:00
dwave-cloud-client academic/dwave-cloud-client: Added (REST interface for D-Wave API) 2022-11-12 22:32:58 +07:00
dwave-greedy academic/dwave-greedy: Added (steepest descent solver for (BQM)) 2022-11-12 22:32:58 +07:00
dwave-hybrid academic/dwave-hybrid: Added (Hybrid Async Decomposition Sampler) 2022-11-12 22:32:59 +07:00
dwave-inspector academic/dwave-inspector: Added (visualize D-Wave structured solver) 2022-11-12 22:32:59 +07:00
dwave-neal academic/dwave-neal: Fix redundant deps. 2023-12-22 07:59:38 +07:00
dwave-networkx academic/dwave-networkx: Added (D-Wave Systems network exploration) 2022-11-12 22:32:59 +07:00
dwave-ocean-sdk academic/dwave-ocean-sdk: Fix deps. 2022-11-19 10:08:09 +07:00
dwave-preprocessing academic/dwave-preprocessing: Added (binary quadratic models tools) 2022-11-12 22:32:59 +07:00
dwave-system academic/dwave-system: Added (basic API for D-Wave system) 2022-11-12 22:32:59 +07:00
dwave-tabu academic/dwave-tabu: Added (C/C++ implementation of MST2 for QUBO) 2022-11-12 22:32:59 +07:00
dwavebinarycsp academic/dwavebinarycsp: Added (contruct binary quadratic models) 2022-11-12 22:32:58 +07:00
easy_spice
ed-v6 Daves unified names 2023-05-06 08:28:36 +07:00
edsim51di
elk academic/elk: Fix SlackBuild permissions. 2022-11-12 22:33:05 +07:00
EMBASSY
EMBOSS
engauge academic/engauge: Fix build. 2024-05-21 10:53:26 +07:00
ent academic/ent: Use https URLs. 2024-03-23 08:17:07 +07:00
ephem academic/ephem: Added (an astronomy program). 2023-08-12 09:46:19 +09:00
eprover
equalx
ess
evopedia_qt
exonerate
extrema
fann
fastqc academic/fastqc: cleanup doinst.sh, info updated 2023-09-23 08:31:12 +07:00
FastTree academic/FastTree: Added (Infers approximately-ML phylogenetic). 2023-09-11 15:05:54 +07:00
FCSalyzer
fet academic/fet: Updated for version 6.21.1. 2024-06-15 07:37:46 +07:00
FigTree academic/FigTree: Add (A graphical viewer of phylogenetic trees). 2023-09-11 14:31:54 +07:00
fiji academic/fiji: Updated for version 20230801_1717. 2023-09-17 00:10:15 +07:00
finchtv academic/finchtv: Fix ARCH section. 2023-05-20 11:17:56 +07:00
fityk academic/fityk: Fix redundant deps. 2023-12-22 07:59:39 +07:00
flann
flexbar academic/flexbar: incl. patches for newer tbb 2023-11-08 00:02:01 +07:00
free42
FreeFem academic/FreeFem: Updated for version 4.14. 2023-12-13 01:48:21 +07:00
g3data academic/g3data: Fix DOWNLOAD. 2023-09-17 00:10:23 +07:00
Gabedit
gaiasky academic/gaiasky: Updated for version 3.6.2. 2024-06-07 12:00:42 +07:00
galculator
gaw3 academic/gaw3: Updated for version 20220315. 2023-04-01 09:14:08 +07:00
Gblocks academic/Gblocks: Update script. 2023-09-13 21:34:07 +07:00
gchemutils
gcompris-qt academic/gcompris-qt: Updated for version 4.1. 2024-05-22 22:29:49 +07:00
gdstk academic/gdstk: Added (GDSII / OASIS file library). 2023-12-09 07:50:06 +07:00
geda-gaf
gelemental academic/gelemental: Updated for version 2.0.2. 2023-04-22 11:38:28 +07:00
gem5
geneconv
genius
genometools
genpak
GeoGebra
geomview academic/geomview: Updated for version 1.9.5. 2023-02-04 07:19:52 +07:00
gephi academic/gephi: Added (Open Graph Viz Platform). 2023-07-19 10:00:21 +07:00
gerbv academic/gerbv: Updated for version 2.10.0. 2024-01-08 10:06:20 +07:00
getdp
getfem academic/getfem: Fix deps. 2022-11-12 22:33:19 +07:00
ggobi
ghemical
glpk
glvis academic/glvis: Added (finite element visualization tool). 2022-11-25 14:22:50 +07:00
gmsh academic/gmsh: Updated for version 4.12.2. 2024-02-10 16:17:21 +07:00
gnucap
gp2fasta
gplates academic/gplates: Added (plate tectonics program). 2024-02-10 16:17:21 +07:00
gpredict academic/gpredict: Added aarch64 flags 2024-01-19 09:51:03 +07:00
grace
gresistor academic/gresistor: Align with template. 2023-05-20 11:17:29 +07:00
gretl
gri academic/gri: Updated for version 2.12.7 2024-05-11 06:51:48 +07:00
Gridcoin-Research academic/Gridcoin-Research: Updated for version 5.4.8.0 2024-05-04 21:45:29 +07:00
gromacs academic/gromacs: Minor template nitpick. 2023-02-18 10:07:13 +07:00
grpn
gspiceui academic/gspiceui: Updated for version 1.2.87. 2023-06-03 10:38:23 +07:00
gtkwave
gtypist academic/gtypist: Updated maintainer info. 2022-11-18 22:02:50 +07:00
gwyddion academic/gwyddion: Updated for version 2.66. 2024-06-01 12:12:00 +07:00
h5utils academic/h5utils: Updated for version 1.13.2. 2023-02-18 10:06:44 +07:00
harminv academic/harminv: Updated for version 1.4.2. 2023-02-18 10:06:44 +07:00
hdfview academic/hdfview: Added (visualization and exploration software). 2023-11-19 21:08:04 +07:00
HMMER academic/HMMER: Updated for version 3.4. 2023-09-13 21:53:45 +07:00
hyphy academic/hyphy: Updated for version 2.5.50. 2023-05-13 19:27:12 +07:00
IGV academic/IGV: Updated for version 2.16.2. 2023-09-17 00:10:15 +07:00
io_lib academic/io_lib: Updated for version 1.15.0. 2023-05-13 19:27:04 +07:00
iqtree academic/iqtree: Updated for version 2.2.2.7. 2023-09-13 21:53:07 +07:00
irsim
Isabelle academic/Isabelle: Added (proof assistant). 2023-07-18 08:47:19 +07:00
isoelectric-point
iTest
itex2mml
ITK academic/ITK: Fix build. 2024-03-12 23:46:52 +07:00
jalview academic/jalview: Updated for version 2.11.2.7. 2023-09-17 00:10:16 +07:00
jellyfish_k-mer
jpicedt
kalign academic/kalign: Added (multipelsquence alignment program). 2023-09-11 14:39:00 +07:00
karma
kissat academic/kissat: Added (SAT solver). 2024-04-14 12:05:18 +07:00
klavaro academic/klavaro: Updated for version 3.14. 2022-12-31 09:14:42 +07:00
klu academic/klu: Fix redundant deps. 2023-12-22 07:59:39 +07:00
knime
kraken
Kst academic/Kst: Updated for version 20221025_5fdd819. 2023-02-22 12:09:51 +07:00
ktikz
kurso
labplot2 academic/labplot2: Fix double compilation. 2023-08-19 09:15:16 +07:00
ladr
laghos academic/laghos: Added (LAGrangian High-Order Solver) 2022-12-17 09:13:53 +07:00
lalnview
lammps academic/lammps: Remove doinst.sh. 2024-04-17 14:55:21 +07:00
lapack95
lapacke academic/lapacke: Updated for version 3.12.0 2024-01-13 07:14:25 +07:00
latex2html
ldl academic/ldl: Align with template. 2023-05-20 11:17:30 +07:00
libghemical
locarna
louvain-community academic/louvain-community: Fix github URL. 2024-04-05 15:18:04 +07:00
lpsolve
mafft academic/mafft: Updated for version 7.520. 2023-05-13 19:27:12 +07:00
magic academic/magic: Updated for version 8.3.474. 2024-05-11 06:51:54 +07:00
mathics academic/mathics: Fix deps. 2022-11-12 22:33:12 +07:00
mathjax2 academic/mathjax2: Update maintainer's email 2023-06-04 23:13:23 +07:00
mathomatic
matio academic/matio: Updated for version 1.5.23. 2023-02-11 09:30:46 +07:00
maxima academic/maxima: Updated for version 5.47.0. 2023-07-02 21:01:11 +07:00
meep academic/meep: Fix redundant deps. 2023-12-22 07:59:39 +07:00
megax academic/megax: Fix and mv ARCH sect. 2023-05-20 11:17:56 +07:00
meme-db-gomo
meme-db-motif
meme-db-tgene
meme-suite academic/meme-suite: Updated for version 5.5.4. 2023-09-13 21:51:25 +07:00
mendeleydesktop academic/mendeleydesktop: Fix ARCH. 2023-06-03 10:38:30 +07:00
metalwalls
MetaPhlAn2 academic/MetaPhlAn2: Fix github URL. 2024-04-05 15:18:04 +07:00
metis academic/metis: Align with template. 2023-05-20 11:17:30 +07:00
mfem academic/mfem: Added (library for finite element methods). 2022-11-20 09:37:41 +07:00
minorminer academic/minorminer: Added (heuristic tool for minor embedding). 2022-11-12 10:48:01 +07:00
mkDSSP
molden academic/molden: Added (Molecular Density Viewer). 2024-06-04 19:59:35 +07:00
molequeue
mpb
mrbayes
mumsa
muscle
muscle5
ncbi-blast academic/ncbi-blast: Fix and mv ARCH sect. 2023-05-20 11:17:56 +07:00
ncbi-blast+ academic/ncbi-blast+: Updated for version 2.14.1. 2023-09-13 21:52:06 +07:00
ncbi-edirect academic/ncbi-edirect: Updated for version 20.5.20231007. 2023-10-14 10:32:26 +07:00
ncbi-rmblastn
nco academic/nco: Updated for version 5.2.4. 2024-04-26 00:45:37 +07:00
ncview
ngspice academic/ngspice: Point the chmod to the correct directory. 2024-02-03 08:08:56 +07:00
novocraft
NWChem academic/NWChem: Added (High-Performance Computational Chemistry) 2022-12-10 07:43:12 +07:00
octave academic/octave: Updated for version 8.4.0 2024-01-13 07:14:26 +07:00
openboard academic/openboard: Updated for version 1.7.1. 2024-05-11 06:51:57 +07:00
OpenFOAM academic/OpenFOAM: Updated for version 11. 2023-12-22 08:47:16 +07:00
OpenMM academic/OpenMM: Fix github tarball handling. 2022-11-05 21:15:16 +07:00
OpenVSP academic/OpenVSP: Updated for version 3.35.3. 2024-06-15 07:37:49 +07:00
pal2nal
paml academic/paml: Updated for version 4.10.6. 2023-04-22 11:38:27 +07:00
pamlX academic/pamlX: Fix paml docs dir. 2023-04-22 11:38:28 +07:00
papi
pari
parmetis
patsy academic/patsy: Fix deps. 2022-11-12 22:33:12 +07:00
pcalc
pcb
penaltymodel academic/penaltymodel: Added (penalty model solver). 2022-11-12 10:49:57 +07:00
perlprimer
PhyML
pianobooster
plasmidomics
plus42 academic/plus42: Updated for version 1.1.12. 2024-06-01 00:33:25 +07:00
pomoxis academic/pomoxis: Added (bioinformatics tools for nanopore research) 2023-03-18 09:50:22 +07:00
prank-msa
primer3 academic/primer3: Updated for version 2.6.1. 2023-06-20 19:52:38 +07:00
pspp academic/pspp: Updated for version 2.0.1. 2024-05-04 21:45:16 +07:00
pulseview
PyAMG academic/PyAMG: Fix redundant deps. 2023-12-22 07:59:38 +07:00
pyCRAC academic/pyCRAC: Fix redundant deps. 2023-12-22 07:59:39 +07:00
pysam academic/pysam: set to use internal htslib 2023-09-23 08:31:12 +07:00
python2-kiwisolver academic/python2-kiwisolver: Align with template. 2023-05-20 11:17:41 +07:00
python2-scipy academic/python2-scipy: Align with template. 2023-05-20 11:17:41 +07:00
python3-ase academic/python3-ase: Fix redundant deps. 2023-12-22 07:59:39 +07:00
python3-scipy academic/python3-scipy: Fix PYTHONPATH. 2024-04-05 15:18:20 +07:00
qalculate-gtk
qcl
qhull academic/qhull: Remove outdated octave symlinks. 2024-01-16 14:36:14 +07:00
qrupdate academic/qrupdate: Fix redundant deps. 2023-12-22 07:59:40 +07:00
qucs
qucs-s academic/qucs-s: Updated for version 24.2.1. 2024-04-04 11:15:06 +07:00
R academic/R: Updated for version 4.4.0. 2024-05-04 21:45:24 +07:00
ramulator academic/ramulator: Fix github tarball handling. 2022-11-26 09:11:46 +07:00
RAxML
rbio academic/rbio: Align with template. 2023-05-20 11:17:27 +07:00
reduce-algebra
RepeatMasker academic/RepeatMasker: Updated for version 4.1.5. 2023-09-17 00:10:17 +07:00
root academic/root: Updated for v6.28.08 2023-11-04 16:39:16 +07:00
rpy2 academic/rpy2: Upgrade to version 3.5.16 2024-04-15 10:00:33 +07:00
sage academic/sage: Updated for 10.1 2023-09-29 10:35:53 +07:00
sage-bin
samtools academic/samtools:Upgrade to 1.20 2024-05-04 21:45:02 +07:00
samtools-legacy
scidavis academic/scidavis: Fix building on -current. 2024-04-13 22:04:05 +07:00
scilab
scmutils academic/scmutils: Added (scm utils). 2023-11-29 18:35:27 +07:00
seaview academic/seaview: treerecs added to REQUIRES. 2023-04-22 11:38:31 +07:00
seqkit academic/seqkit: Updated for version 2.5.1. 2023-09-23 08:42:56 +07:00
SeqMonk
sequence-analysis
Shark
sigrok-cli
sim academic/sim: Added (local similarity program). 2023-09-11 22:18:38 +07:00
SimEng academic/SimEng: Fix github tarball handling. 2022-11-26 09:11:46 +07:00
siril
smath-studio academic/smath-studio: Updated for version 1.1.8763 2024-05-04 21:45:29 +07:00
snpEff
solfege
spades academic/spades: Updated for version 3.15.5. 2023-04-21 09:30:46 +07:00
speedcrunch
spiceopus
spidey academic/spidey: Fix and mv ARCH sect. 2023-05-20 11:17:56 +07:00
spqr academic/spqr: Fix redundant deps. 2023-12-22 07:59:40 +07:00
squizz
staden academic/staden: A few enhancements. 2023-05-13 19:27:12 +07:00
STAR academic/STAR:Upgrade to version 2.7.11b 2024-01-30 07:48:15 +07:00
stellarium academic/stellarium: Updated for version 23.4. 2024-01-09 08:45:39 +07:00
stellarsolver academic/stellarsolver: Mark for x86_64 only. 2024-05-04 21:45:22 +07:00
stringtie
SU2 academic/SU2: Add network warning to README. 2023-09-23 11:33:27 +07:00
suitesparse academic/suitesparse: Ensure correct linking 2023-11-25 22:12:39 +07:00
suitesparseconfig academic/suitesparseconfig: Align with template. 2023-05-20 11:17:30 +07:00
sundials
sword
sword-data-kjv academic/sword-data-kjv: Fix install location. 2024-01-18 07:53:37 +07:00
t_coffee
tabix-legacy
tiemu academic/tiemu: New maintainer. 2023-02-25 09:18:10 +07:00
tilem
tilem2
tkgate
topdraw academic/topdraw: update source. 2023-09-11 22:18:50 +07:00
tophat
treebest-ensembl
TreeGraph
treerecs academic/treerecs: Added (Treerecs: a tree reconciliation tool) 2023-04-22 11:38:30 +07:00
treeviewx academic/treeviewx: update source. 2023-09-11 22:18:50 +07:00
trfind
trimmomatic
tuxmath
tuxtype2
ucsc-blat academic/ucsc-blat: Fix and mv ARCH sect, http->https. 2023-05-20 11:17:56 +07:00
ugene academic/ugene: Updated for version 48.1. 2023-09-17 00:10:15 +07:00
umfpack academic/umfpack: Fix redundant deps. 2023-12-22 07:59:40 +07:00
units academic/units: Updated for version 2.23. 2024-02-24 15:34:49 +07:00
vCAPS_coevolution
vcftools
velocyto academic/velocyto: Use correct github URL. 2023-03-25 10:02:01 +07:00
verilator
verilog academic/verilog: Fix download url. 2022-11-05 12:56:05 +07:00
veusz academic/veusz: Fix deps. 2022-11-12 22:33:18 +07:00
ViennaRNA academic/ViennaRNA: upgrade to version 2.6.4; edit README 2023-10-10 06:34:40 +07:00
voro++
wcalc academic/wcalc: Use correct sourceforge link. 2024-01-27 15:37:51 +07:00
wehi-cellsymphony
wehi-deid
wehi-hackit
wehi-weasel academic/wehi-weasel: Updated for version 3.8.0.18. 2023-09-17 00:10:15 +07:00
WEVOTE
wise academic/wise: Update script. 2023-09-23 08:42:56 +07:00
wmcalc academic/wmcalc: Fix doinst.sh. 2022-12-31 09:14:48 +07:00
WolframEngine academic/WolframEngine: Updated for version 14.0.0. 2024-04-13 22:03:51 +07:00
WordNet
wxMaxima academic/wxMaxima: Use DESTDIR properly. 2023-07-08 16:41:57 +07:00
x48 academic/x48: Fixed MD5SUM. 2024-04-14 08:34:30 +07:00
xcircuit academic/xcircuit: Updated for version 3.10.30. New maintainer. 2023-03-25 10:01:45 +07:00
xephem academic/xephem: Updated for version 4.1.0. 2023-08-12 09:42:58 +09:00
xflr5 academic/xflr5: gzip patches. 2023-12-29 18:49:32 +07:00
xfoil
xiphos academic/xiphos: Update HOMEPAGE. 2024-02-16 18:51:22 +07:00
xoscope academic/xoscope: Align with template. 2023-05-20 11:17:31 +07:00
xschem academic/xschem: Update script. 2023-12-06 10:09:31 +07:00
xsimd academic/xsimd: Updated for version 13.0.0. 2024-05-25 11:47:40 +07:00
yices2 academic/yices2: Added (Satisfiability modulo theories solver). 2022-11-05 12:46:15 +07:00
z3
ZeGrapher
zotero academic/zotero: update 6.0.35 2024-03-09 06:18:17 +07:00
zotero-gtk2 academic/zotero-gtk2: Added (Collect and share research sources) 2023-05-06 08:28:23 +07:00