.. |
abella
|
academic/abella: Added (interactive theorem prover).
|
2019-08-10 01:23:33 +07:00 |
abntex
|
|
|
aenig4
|
|
|
aline
|
|
|
aliview
|
academic/aliview: Updated for version 1.26.
|
2019-08-03 06:46:55 +07:00 |
amd
|
academic/amd: Updated for SuiteSparse 5.4.0.
|
2019-01-05 07:49:27 +07:00 |
amplicon
|
|
|
amplifx
|
|
|
antiprism
|
|
|
archaeopteryx
|
|
|
aris
|
|
|
arka
|
|
|
armadillo
|
|
|
arpack
|
|
|
arpack-ng
|
academic/arpack-ng: Updated for version 3.7.0.
|
2019-01-19 07:20:41 +07:00 |
artha
|
|
|
avl
|
|
|
avogadro
|
|
|
bcftools
|
academic/bcftools: Added (BCF calling tools).
|
2019-01-05 07:49:16 +07:00 |
bedGraphToBigWig
|
|
|
bedtools
|
academic/bedtools: Updated for version 2.28.0.
|
2019-08-03 06:47:27 +07:00 |
biblesync
|
|
|
bibletime
|
|
|
bibus
|
|
|
biopython
|
academic/biopython: Added (Python tools for biological computation).
|
2019-08-03 06:41:13 +07:00 |
boinc
|
|
|
bowtie
|
|
|
bowtie2
|
academic/bowtie2: Updated for version 2.3.5.1.
|
2019-05-11 07:13:50 +07:00 |
bowtie2-legacy
|
|
|
bpp-core
|
|
|
bpp-phyl
|
|
|
bpp-phyl-omics
|
|
|
bpp-popgen
|
|
|
bpp-seq
|
|
|
bpp-seq-omics
|
|
|
bppsuite
|
|
|
btf
|
academic/btf: Updated for SuiteSparse 5.4.0.
|
2019-01-05 07:49:29 +07:00 |
bwa
|
|
|
cadabra2
|
academic/cadabra2: Updated for version 2.2.7_d81535e.
|
2019-08-03 07:19:13 +07:00 |
CAFS_divergence
|
|
|
calc
|
|
|
calcoo
|
|
|
camd
|
academic/camd: Updated for SuiteSparse 5.4.0.
|
2019-01-05 07:49:27 +07:00 |
cap3
|
|
|
CAPS_coevolution
|
|
|
cblas
|
|
|
ccolamd
|
academic/ccolamd: Updated for SuiteSparse 5.4.0.
|
2019-01-05 07:49:28 +07:00 |
celestia
|
|
|
chemtool
|
|
|
cholmod
|
academic/cholmod: Updated for version 3.0.13.
|
2019-01-05 07:49:29 +07:00 |
cistrome-CEAS
|
|
|
cistrome-conductGO
|
|
|
cistrome-extra
|
|
|
cistrome-MACS
|
|
|
cistrome-mdseqpos
|
|
|
clark-ugene
|
academic/clark-ugene: Updated for version git_6917bf9.
|
2019-08-03 06:51:28 +07:00 |
cld2
|
|
|
clustalo
|
|
|
clustalw
|
|
|
clustalx
|
|
|
colamd
|
academic/colamd: Updated for SuiteSparse 5.4.0.
|
2019-01-05 07:49:28 +07:00 |
convertall
|
|
|
copasi
|
academic/copasi: Updated for version 4.26.213.
|
2019-08-03 07:09:55 +07:00 |
coq
|
|
|
cryptominisat
|
academic/cryptominisat: Updated for version 5.6.8.
|
2019-03-24 09:56:46 +07:00 |
csparse
|
academic/csparse: Updated for SuiteSparse 5.4.0.
|
2019-01-05 07:49:28 +07:00 |
cufflinks
|
academic/cufflinks: Update DEPS.
|
2019-01-09 07:33:01 +07:00 |
cutadapt
|
|
|
cvc4
|
academic/cvc4: Add missing run-antlr.
|
2019-04-27 04:42:40 +07:00 |
cxsparse
|
academic/cxsparse: Updated for SuiteSparse 5.4.0.
|
2019-01-05 07:49:28 +07:00 |
dakota
|
|
|
Data2FCS
|
|
|
DendroPy
|
academic/DendroPy: Added (A Phylogenetic Computing Library).
|
2019-08-02 00:18:53 +07:00 |
diamond
|
academic/diamond: Updated for version 0.9.25.
|
2019-08-03 07:20:55 +07:00 |
drawtiming
|
|
|
ds9
|
|
|
easy_spice
|
|
|
ed-v6
|
academic/ed-v6: Added (old version of ed).
|
2019-03-23 07:54:36 +07:00 |
edsim51di
|
academic/edsim51di: Update DEP.
|
2019-05-30 09:57:35 +07:00 |
EMBASSY
|
|
|
EMBOSS
|
|
|
engauge
|
|
|
ent
|
|
|
eprover
|
academic/eprover: Added (a first-order theorem prover).
|
2019-02-23 07:47:50 +07:00 |
equalx
|
|
|
ess
|
|
|
evopedia_qt
|
|
|
exonerate
|
|
|
extrema
|
|
|
fann
|
|
|
fastqc
|
|
|
FCSalyzer
|
|
|
fet
|
academic/fet: Updated for version 5.39.0.
|
2019-07-30 00:42:21 +07:00 |
fiji
|
academic/fiji: Updated for version 20190718.
|
2019-08-03 06:52:32 +07:00 |
finchtv
|
|
|
fityk
|
|
|
flann
|
|
|
flashqard
|
|
|
flexbar
|
academic/flexbar: Updated for version 3.5.0.
|
2019-05-11 07:14:20 +07:00 |
free42
|
|
|
freechartgeany
|
|
|
FreeFem
|
academic/FreeFem: Added (non-linear multiphysics software).
|
2019-09-21 22:25:32 +07:00 |
g3data
|
|
|
galculator
|
|
|
gaw3
|
|
|
Gblocks
|
|
|
gcalctool
|
|
|
gchemutils
|
|
|
gcompris
|
|
|
geda-gaf
|
|
|
gelemental
|
academic/gelemental: Updated for version 2.0.0.
|
2019-08-03 07:04:14 +07:00 |
geneconv
|
|
|
genius
|
|
|
genometools
|
|
|
genpak
|
|
|
GeoGebra
|
academic/GeoGebra: Update DEP.
|
2019-05-30 09:56:51 +07:00 |
geomview
|
|
|
gerbv
|
|
|
ggobi
|
|
|
ghemical
|
|
|
glpk
|
|
|
gnucap
|
|
|
gp2fasta
|
|
|
gpredict
|
academic/gpredict: Updated for version 2.3.
|
2019-01-18 23:39:51 +07:00 |
grace
|
|
|
gresistor
|
|
|
gretl
|
|
|
gri
|
academic/gri: Added (graphics language).
|
2019-04-12 22:37:58 +07:00 |
Gridcoin-Research
|
academic/Gridcoin-Research: Updated for version 4.0.5.0.
|
2019-09-14 11:28:07 +07:00 |
grpn
|
|
|
gspiceui
|
academic/gspiceui: Updated for version 1.2.36.
|
2019-08-17 20:07:20 +07:00 |
gtkwave
|
|
|
gtypist
|
|
|
gwyddion
|
academic/gwyddion: Updated for version 2.54.
|
2019-09-13 23:20:14 +07:00 |
h5utils
|
academic/h5utils: Added (visualization and conversion of HDF5 data).
|
2019-07-05 22:47:46 +07:00 |
harminv
|
academic/harminv: Added (harmonic inversion from a time series).
|
2019-07-08 05:50:43 +07:00 |
HMMER
|
|
|
hyphy
|
|
|
io_lib
|
|
|
irsim
|
|
|
isoelectric-point
|
|
|
iTest
|
|
|
itex2mml
|
|
|
ITK
|
academic/ITK: Updated for version 4.13.2.
|
2019-05-04 09:06:47 +07:00 |
jalview
|
|
|
jellyfish_k-mer
|
academic/jellyfish_k-mer: Added (k-mers counting tools).
|
2018-12-25 05:33:47 +07:00 |
jpicedt
|
|
|
jugglinglab
|
|
|
karma
|
|
|
kile
|
|
|
kiwisolver
|
|
|
klavaro
|
|
|
klu
|
academic/klu: Updated for SuiteSparse 5.4.0.
|
2019-01-05 07:49:29 +07:00 |
knime
|
|
|
kraken
|
academic/kraken: Updated for version 1.1.1.
|
2019-08-03 07:04:42 +07:00 |
Kst
|
|
|
ktikz
|
|
|
kurso
|
|
|
labplot2
|
|
|
ladr
|
|
|
lalnview
|
|
|
lapack95
|
|
|
lapacke
|
academic/lapacke: Build the deprecated routines.
|
2019-02-02 08:12:07 +07:00 |
latex2html
|
academic/latex2html: Added manual doc.
|
2019-07-04 07:51:28 +07:00 |
ldl
|
academic/ldl: Updated for SuiteSparse 5.4.0.
|
2019-01-05 07:49:28 +07:00 |
libghemical
|
|
|
libqalculate
|
academic/libqalculate: Updated for version 3.4.0
|
2019-09-21 16:21:20 +07:00 |
link-grammar
|
|
|
locarna
|
academic/locarna: Updated for version 1.9.2.3.
|
2019-09-08 07:30:07 +07:00 |
loggerpro
|
|
|
lpsolve
|
|
|
mafft
|
academic/mafft: Updated for version 7.429.
|
2019-08-03 07:05:11 +07:00 |
magic
|
|
|
mathics
|
|
|
mathomatic
|
|
|
matio
|
|
|
maxima
|
|
|
megax
|
|
|
meme-suite
|
|
|
mendeleydesktop
|
|
|
MetaPhlAn2
|
academic/RepeatMasker: Updated for version 4.0.9_p2.
|
2019-08-03 06:46:20 +07:00 |
metis
|
|
|
mkDSSP
|
|
|
Mnemosyne
|
academic/Mnemosyne: Updated for version 2.6.1.
|
2019-02-02 11:57:59 +07:00 |
mrbayes
|
academic/mrbayes: Updated for version 3.2.7a.
|
2019-08-03 07:05:50 +07:00 |
muscle
|
academic/muscle: Updated for version 3.8.1551.
|
2019-08-03 07:06:30 +07:00 |
ncbi-blast
|
|
|
ncbi-blast+
|
academic/ncbi-blast+: Updated for version 2.9.0.
|
2019-08-03 07:07:02 +07:00 |
ncbi-rmblastn
|
academic/ncbi-rmblastn: Update DEP.
|
2018-12-24 22:16:58 +07:00 |
ncview
|
|
|
ngspice
|
academic/ngspice: Update script.
|
2019-02-08 20:58:29 +07:00 |
novocraft
|
academic/novocraft: Updated for version 3.09.03.
|
2019-08-03 06:20:02 +07:00 |
octave
|
academic/octave: Update DEP.
|
2019-04-12 02:42:43 +07:00 |
OpenFOAM
|
academic/OpenFOAM: Updated for version 7.
|
2019-07-13 07:50:49 +07:00 |
pal2nal
|
|
|
paml
|
|
|
pamlX
|
|
|
papi
|
|
|
pari
|
academic/pari: Updated for version 2.11.1.
|
2019-06-29 07:50:59 +07:00 |
parmetis
|
|
|
patsy
|
|
|
pcb
|
|
|
perlprimer
|
academic/perlprimer: Updated for version 1.2.4.
|
2019-08-03 07:08:27 +07:00 |
PhyML
|
academic/PhyML: Updated for version 3.3.20190321.
|
2019-08-02 00:19:32 +07:00 |
pianobooster
|
|
|
plasmidomics
|
|
|
prank-msa
|
|
|
primer3
|
|
|
pspp
|
|
|
pulseview
|
|
|
PyAMG
|
|
|
pyCRAC
|
academic/pyCRAC: Updated for version 1.4.4.
|
2019-04-13 06:29:59 +07:00 |
pyfits
|
|
|
pysam
|
academic/pysam: Updated for version 0.15.3.
|
2019-08-03 06:21:42 +07:00 |
qalculate-gtk
|
academic/qalculate-gtk: Updated for version 3.4.0
|
2019-09-21 16:21:20 +07:00 |
qcl
|
|
|
qhull
|
|
|
qrupdate
|
academic/qrupdate: Update URLs and patches.
|
2019-01-05 07:49:30 +07:00 |
QtiPlot
|
|
|
qtoctave
|
|
|
qucs
|
|
|
R
|
academic/R: Updated for version 3.6.1.
|
2019-08-09 23:44:19 +07:00 |
RAxML
|
academic/RAxML: Added (Randomized Axelerated Maximum Likelihood).
|
2019-08-02 00:45:41 +07:00 |
rbio
|
academic/rbio: Updated for SuiteSparse 5.4.0.
|
2019-01-05 07:49:29 +07:00 |
reduce-algebra
|
academic/reduce-algebra: Updated for version 20190915svn5129.
|
2019-09-21 13:57:24 +07:00 |
RepeatMasker
|
academic/RepeatMasker: Updated for version 4.0.9_p2.
|
2019-08-03 06:46:20 +07:00 |
root
|
|
|
sage
|
|
|
sage-bin
|
|
|
samtools
|
academic/samtools: Updated for version 1.9 + new maintainer.
|
2019-01-05 07:49:17 +07:00 |
samtools-legacy
|
academic/samtools-legacy: Fix path.
|
2019-01-09 07:31:53 +07:00 |
scidavis
|
academic/scidavis: Add patches.
|
2019-08-10 06:58:55 +07:00 |
scilab
|
academic/scilab: Updated for version 6.0.2.
|
2019-07-04 07:43:33 +07:00 |
scipy
|
academic/scipy: Update script.
|
2019-02-08 20:25:34 +07:00 |
scipy3
|
academic/scipy3: Updated for version 1.1.0.
|
2019-02-08 20:26:26 +07:00 |
seaview
|
|
|
sequence-analysis
|
|
|
Shark
|
|
|
sigrok-cli
|
|
|
siril
|
|
|
slatec
|
|
|
smath-studio
|
|
|
snpEff
|
|
|
solfege
|
|
|
spades
|
|
|
speedcrunch
|
|
|
spiceopus
|
|
|
spidey
|
|
|
spqr
|
academic/spqr: Updated for version 2.0.9.
|
2019-01-05 07:49:30 +07:00 |
squizz
|
|
|
staden
|
|
|
STAR
|
academic/STAR: Updated for version 2.7.2b.
|
2019-09-08 07:27:54 +07:00 |
stellarium
|
|
|
stringtie
|
academic/stringtie: Updated for version 1.3.6.
|
2019-08-03 07:09:21 +07:00 |
SU2
|
academic/SU2: Added (Open Source CFD Code).
|
2019-03-16 06:53:25 +07:00 |
suitesparse
|
academic/suitesparse: Updated for version 5.4.0
|
2019-02-17 21:56:39 +07:00 |
suitesparseconfig
|
academic/suitesparseconfig: Updated for version 5.4.0.
|
2019-01-05 07:49:27 +07:00 |
sundials
|
|
|
sword
|
|
|
sword-data-kjv
|
|
|
t_coffee
|
academic/t_coffee: Updated for version 13.00_git33cdeb8.
|
2019-08-03 07:10:43 +07:00 |
tabix
|
|
|
tabix-legacy
|
|
|
tilem
|
|
|
tilem2
|
|
|
tkgate
|
|
|
topdraw
|
|
|
tophat
|
academic/tophat: Updated for version 2.1.2.
|
2019-08-03 07:11:25 +07:00 |
TreeGraph
|
academic/TreeGraph: Fix DOWNLOAD.
|
2019-06-28 12:11:23 +07:00 |
treeviewx
|
|
|
trfind
|
|
|
trimmomatic
|
academic/trimmomatic: Added (Trimming Tool).
|
2018-12-24 22:16:59 +07:00 |
tuxmath
|
|
|
tuxtype2
|
|
|
ucsc-blat
|
|
|
ugene
|
academic/ugene: Updated for version 1.32.0.
|
2019-08-03 06:52:00 +07:00 |
umfpack
|
academic/umfpack: Updated for version 5.7.8.
|
2019-01-05 07:49:29 +07:00 |
units
|
academic/units: Updated for version 2.19.
|
2019-06-09 05:32:07 +07:00 |
vcftools
|
|
|
verilog
|
|
|
veusz
|
|
|
ViennaRNA
|
academic/ViennaRNA: Updated for version 2.4.14.
|
2019-09-08 11:26:49 +07:00 |
wehi-cellsymphony
|
|
|
wehi-deid
|
|
|
wehi-hackit
|
|
|
wehi-weasel
|
|
|
WEVOTE
|
|
|
wmcalc
|
|
|
WordNet
|
|
|
wxmacmolplt
|
|
|
wxMaxima
|
|
|
xcircuit
|
|
|
xephem
|
|
|
xflr5
|
academic/xflr5: Updated for version 6.43.
|
2019-02-01 23:55:33 +07:00 |
xfoil
|
|
|
xiphos
|
|
|
xoscope
|
|
|
Xyce
|
|
|
z3
|
academic/z3: Added (theorem solver).
|
2019-03-23 07:25:53 +07:00 |
ZeGrapher
|
|
|
zotero
|
academic/zotero: Updated for version 5.0.73.
|
2019-09-13 23:42:54 +07:00 |