B. Watson 0dabe9095b academic/cap3: Fix docs. ... Signed-off-by: B. Watson <yalhcru@gmail.com>		2022-04-05 12:35:39 -04:00
..
abntex	academic/abntex: Updated for version 20200715_f0a4d3c.	2022-02-27 22:29:04 -06:00
aenig4
aeskulap	academic/aeskulap: Added (medical image viewer)	2022-04-02 18:19:19 +07:00
aline
aliview	academic/aliview: Use zulu-openjdk11.	2022-03-03 15:56:48 +07:00
amd
amplicon
amplifx	academic/amplifx: Fix download URL.	2022-04-02 12:20:16 -04:00
antiprism	academic/antiprism: Remove .la files.	2022-03-08 09:44:26 +07:00
archaeopteryx	academic/archaeopteryx: Use zulu-openjdk11.	2022-03-03 15:56:50 +07:00
aris	academic/aris: Fix for gcc >= 10.x.	2022-02-27 22:29:04 -06:00
arka
armadillo	academic/armadillo: Fix download URL, doc dir.	2022-04-02 12:27:10 -04:00
arpack	academic/arpack: Disable parallel build.	2022-03-26 01:20:21 +07:00
arpack-ng
artha
avl
bcftools	academic/bcftools: Update to version 1.15	2022-03-05 08:18:20 +07:00
bedGraphToBigWig	academic/bedGraphToBigWig: Strip binary.	2022-04-04 12:54:04 -04:00
bedtools
biblesync
bibletime
bibus
biopython
boinc	academic/boinc: Fix wxPython/wxGTK3 conflict.	2022-03-09 17:20:43 +07:00
bowtie	academic/bowtie: Mark x86 as unsupported.	2022-03-18 00:26:11 +07:00
bowtie2	academic/bowtie2: Mark x86 as unsupported.	2022-03-18 00:26:11 +07:00
bowtie2-legacy	academic/bowtie2-legacy: Patch source.	2022-03-03 09:38:11 +00:00
btf
bwa
cadabra2
CAFS_divergence
calc	academic/calc: Updated for version 2.14.0.14.	2022-02-06 11:42:42 +07:00
calcoo	various: Use zulu jdk builds for REQUIRES.	2022-03-03 15:56:51 +07:00
camd
cap3	academic/cap3: Fix docs.	2022-04-05 12:35:39 -04:00
CAPS_coevolution
cblas	academic/cblas: Updated for version 3.10.0	2021-09-06 08:50:29 +07:00
ccolamd
cdo	academic/cdo: Updated for version 2.0.4.	2022-02-17 12:59:54 +07:00
celestia	academic/celestia: Wrap README at 72 columns.	2022-03-12 14:34:16 -05:00
chartgeany
chemtool	academic/chemtool: Fix build failure with gcc10.	2022-02-21 02:41:03 -06:00
cholmod
cistrome-CEAS
cistrome-conductGO
cistrome-extra
cistrome-MACS	academic/cistrome-MACS: Handle content-disposition download.	2022-03-05 00:18:21 +13:00
cistrome-mdseqpos	academic/cistrome-mdseqpos: Fix dependency.	2022-02-14 08:06:58 +07:00
clark-ugene
cld2
clustalo	academic/clustalo: Remove .la files.	2022-03-08 09:44:26 +07:00
clustalw
clustalx	academic/clustalx: Patch for qt5.	2022-02-27 22:29:05 -06:00
colamd
colin	academic/colin: Use qt4.	2022-02-27 22:29:05 -06:00
convertall	academic/convertall: Fix docs.	2022-04-05 12:28:40 -04:00
copasi
cryptominisat
csparse
cufflinks	academic/cufflinks: Fix info file.	2022-03-12 11:26:42 +13:00
cutadapt
cvc4	various: Use zulu jdk builds for REQUIRES.	2022-03-03 15:56:51 +07:00
cxsparse
dakota	academic/dakota: Updated for version 6.15.0.	2022-02-27 22:29:05 -06:00
Data2FCS	academic/Data2FCS: Use zulu-openjdk11.	2022-03-03 15:56:48 +07:00
datamash
DendroPy
diamond
ds9	academic/ds9: Wrap README at 72 columns.	2022-03-12 14:34:33 -05:00
easy_spice
ed-v6	academic/ed-v6: Fix github tarball handling.	2022-03-01 19:35:43 +07:00
edsim51di	academic/edsim51di: Update DOWNLOAD to https.	2022-03-04 02:48:05 +00:00
EMBASSY	academic/EMBASSY: Remove .la files.	2022-03-08 09:44:25 +07:00
EMBOSS	academic/EMBOSS: Remove .la files.	2022-03-08 09:44:25 +07:00
engauge	academic/engauge: Updated for version 12.1.	2022-02-27 22:29:05 -06:00
ent	academic/ent: remove template comment.	2021-10-13 00:51:26 +07:00
eprover
equalx	academic/equalx: Fix build for qt5.	2021-10-13 00:51:26 +07:00
ess
evopedia_qt	academic/evopedia_qt: Use qt4.	2022-02-27 22:29:05 -06:00
exonerate
extrema	academic/extrema: Remove .la files.	2022-03-08 09:44:26 +07:00
fann
fastqc	various: Use zulu jdk builds for REQUIRES.	2022-03-03 15:56:51 +07:00
FCSalyzer	academic/FCSalyzer: Handle url-encoded filenames.	2022-03-05 00:17:45 +13:00
fet	academic/fet: Updated for versio 6.3.1.	2022-04-02 18:18:58 +07:00
fiji	academic/fiji: Fix source name on 32bit.	2022-03-18 00:26:11 +07:00
finchtv
fityk	academic/fityk: Fix wxPython/wxGTK3 conflict.	2022-03-09 17:20:43 +07:00
flann	academic/flann: Fix building with the newer cmake, cleanups.	2022-02-06 15:47:07 +07:00
flexbar	academic/flexbar: Update copyright year.	2021-10-16 00:20:48 +07:00
free42
FreeFem
g3data	academic/g3data: Update github tarball handling.	2022-03-01 19:35:44 +07:00
galculator
gaw3
Gblocks	academic/Gblocks: Fix download.	2022-02-27 22:29:06 -06:00
gchemutils	academic/gchemutils: Fix typo in script.	2022-03-09 14:41:35 -05:00
gcompris-qt	academic/gcompris-qt: Updated for version 2.3.1.	2022-03-18 00:26:00 +07:00
geda-gaf	academic/geda-gaf: Remove .la files.	2022-03-08 09:44:26 +07:00
gelemental	academic/gelemental: Remove .la files.	2022-03-08 09:44:27 +07:00
geneconv
genius	academic/genius: Updated for version 1.0.27.	2022-02-27 22:29:05 -06:00
genometools
genpak
GeoGebra	academic/GeoGebra: Use zulu-openjdk7.	2022-03-03 15:56:45 +07:00
geomview	academic/geomview: Remove .la files.	2022-03-08 09:44:27 +07:00
gerbv	academic/gerbv: Remove .la files.	2022-03-08 09:44:27 +07:00
getdp	academic/getdp: Updated for version 3.4.0	2021-12-31 08:27:04 +07:00
ggobi	academic/ggobi: Updated for version 2.1.11.	2022-03-09 17:20:42 +07:00
ghemical	academic/ghemical: Fix build.	2022-02-27 22:29:05 -06:00
glpk	academic/glpk: Remove .la files.	2022-03-08 09:44:25 +07:00
gmsh	academic/gmsh: Updated for version 4.9.2	2021-12-31 08:27:05 +07:00
gnucap
gp2fasta	academic/gp2fasta: Use qt4.	2022-02-27 22:29:05 -06:00
gpredict	academic/gpredict: revert to latest stable version 2.2.1	2022-02-24 22:05:13 +07:00
grace
gresistor
gretl	academic/gretl: Remove .la files.	2022-03-08 09:44:27 +07:00
gri
Gridcoin-Research	academic/Gridcoin-Research: Use MAKEFLAGS to pass numjobs.	2022-02-27 22:29:04 -06:00
grpn
gspiceui	academic/gspiceui: Depend on wxGTK3 instead of wxPython3	2021-10-02 16:50:37 +07:00
gtkwave	academic/gtkwave: Updated for version 3.3.111.	2022-02-27 22:29:05 -06:00
gtypist
gwyddion	academic/gwyddion: Remove .la files.	2022-03-08 09:44:27 +07:00
h5utils
harminv	academic/harminv: Remove .la files.	2022-03-08 09:44:27 +07:00
HMMER
hyphy
IGV
io_lib	academic/io_lib: Remove .la files.	2022-03-08 09:44:28 +07:00
irsim
isoelectric-point	academic/isoelectric-point: Use qt4.	2022-02-27 22:29:06 -06:00
iTest	academic/iTest: Use qt4.	2022-02-27 22:29:06 -06:00
itex2mml
ITK	academic/ITK: Update the internal patch for gcc 11.x.	2021-08-19 18:33:48 +07:00
jalview	academic/jalview: Use zulu-openjdk11.	2022-03-03 15:56:49 +07:00
jellyfish_k-mer	academic/jellyfish_k-mer: Remove .la files.	2022-03-08 09:44:28 +07:00
jpicedt	various: Use zulu jdk builds for REQUIRES.	2022-03-03 15:56:51 +07:00
jugglinglab	various: Use zulu jdk builds for REQUIRES.	2022-03-03 15:56:51 +07:00
karma	academic/karma: Allow ARCH=i586 in environment.	2022-03-20 20:45:13 +07:00
kiwisolver
klavaro	academic/klavaro: Updated for version 3.11.	2022-02-17 12:58:30 +07:00
klu
knime
kraken
Kst	academic/Kst: patch to fix the path for H5Cpp.h file	2022-03-03 15:56:37 +07:00
ktikz
kurso	academic/kurso: x86 is unsupported.	2022-03-12 11:30:45 +13:00
labplot2	academic/labplot2: Wrap README at 72 columns.	2022-03-12 14:34:49 -05:00
ladr	academic/ladr: Wrap README at 72 columns.	2022-03-12 14:35:24 -05:00
lalnview
lapack95
lapacke	academic/lapacke: Updated for version 3.10.0	2021-09-06 08:50:29 +07:00
latex2html
ldl
libghemical	academic/libghemical: Remove .la files.	2022-03-08 09:44:28 +07:00
link-grammar	academic/link-grammar: Remove .la files.	2022-03-08 09:44:28 +07:00
locarna	academic/locarna: Remove .la files.	2022-03-08 09:44:28 +07:00
lpsolve
mafft
magic
mathics	academic/mathics: Updated for version 4.0.0.	2022-04-02 18:19:15 +07:00
mathjax2	academic/mathjax2: Fix github tarball handling.	2022-03-01 19:35:44 +07:00
mathomatic
matio	academic/matio: Remove .la files.	2022-03-08 09:44:28 +07:00
maxima
meep	academic/meep: Remove .la files.	2022-03-08 09:44:28 +07:00
megax
meme-db-gomo
meme-db-motif
meme-db-tgene
meme-suite	academic/meme-suite: Remove python3 dep (part of slackware).	2022-02-14 08:06:58 +07:00
mendeleydesktop
MetaPhlAn2
metis
mkDSSP	academic/mkDSSP: Updated for version 4.0.3, switch to cmake.	2022-02-07 23:04:38 +07:00
molequeue	academic/molequeue: Added (Desktop integration of hq resources)	2022-04-02 18:19:20 +07:00
mpb	academic/mpb: Remove .la files.	2022-03-08 09:44:29 +07:00
mrbayes
muscle
ncbi-blast
ncbi-blast+	academic/ncbi-blast+: Fix build on i586.	2022-03-18 00:26:12 +07:00
ncbi-rmblastn	academic/ncbi-rmblastn: Allow ARCH=i586 in environment.	2022-03-20 20:45:13 +07:00
nco	academic/nco: Remove .la files.	2022-03-08 09:44:29 +07:00
ncview
ngspice	academic/ngspice: Updated for version 36.	2022-04-02 18:18:57 +07:00
novocraft	academic/novocraft: files update.	2021-10-16 00:19:04 +07:00
octave	academic/octave: Wrap README at 72 columns.	2022-03-12 14:35:56 -05:00
openboard	academic/openboard: Fix slack-desc.	2022-03-12 11:31:57 +13:00
OpenFOAM
pal2nal
paml
pamlX	academic/pamlX: Use qt4.	2022-02-27 22:29:06 -06:00
papi	academic/papi: Updated for version 6.0.0.1.	2022-02-27 22:29:06 -06:00
pari
parmetis
patsy
pcalc
pcb
perlprimer
PhyML
pianobooster	academic/pianobooster: Added the dependency ftgl.	2022-02-27 22:29:06 -06:00
plasmidomics
primer3
pspp	academic/pspp: Updated for version 1.4.1.	2022-02-27 22:29:06 -06:00
pulseview	academic/pulseview: Updated for version 20220225_4efbe9b.	2022-02-27 22:29:06 -06:00
PyAMG
pyCRAC	academic/pyCRAC: Update MD5SUM.	2022-03-04 03:30:43 +00:00
pyfits
pysam	academic/pysam: Use internal htslib-1.14	2022-03-05 08:20:12 +07:00
qalculate-gtk
qcl
qhull
qrupdate	academic/qrupdate: Wrap README at 72 columns.	2022-03-12 14:36:23 -05:00
qucs	academic/qucs: Align to template.	2022-03-26 11:46:45 +13:00
R	academic/R: Updated for version 4.1.2.	2022-02-09 16:18:00 +07:00
RAxML
rbio
reduce-algebra
RepeatMasker
root	academic/root: Actually install doinst.sh.	2022-03-17 12:38:15 -04:00
rpy2	academic/rpy2: Update DEP.	2021-11-24 09:00:05 +07:00
sage	academic/sage: Updated for version 9.4	2022-01-17 09:00:27 +07:00
sage-bin	academic/sage-bin: Fix quote.	2022-02-12 13:31:15 +07:00
samtools	academic/samtools: Update to version 1.15	2022-03-05 08:18:59 +07:00
samtools-legacy
scidavis	academic/scidavis: Update DEPS and infomation in the build script	2021-12-31 08:27:05 +07:00
scilab	various: Use zulu jdk builds for REQUIRES.	2022-03-03 15:56:51 +07:00
scipy	academic/scipy: Updated for version 1.2.2.	2022-01-22 08:22:58 +07:00
scipy3	academic/scipy3: Wrap README at 72 columns.	2022-03-12 14:37:53 -05:00
seaview	academic/seaview: Removed the treerecs dependency (ftb).	2022-03-01 19:35:45 +07:00
seqkit
SeqMonk
sequence-analysis	academic/sequence-analysis: Use zulu-openjdk11.	2022-03-03 15:56:49 +07:00
Shark
sigrok-cli	academic/sigrok-cli: Updated for version 20220222_525f481.	2022-03-01 19:35:46 +07:00
siril	academic/siril: Fix VERSION.	2022-03-12 11:36:35 +13:00
smath-studio	academic/smath-studio: Updated email	2022-01-22 08:22:59 +07:00
snpEff	academic/snpEff: Use zulu-openjdk11.	2022-03-03 15:56:49 +07:00
solfege
spades
speedcrunch
spiceopus
spidey
spqr	academic/spqr: Wrap README at 72 columns.	2022-03-12 14:38:22 -05:00
squizz	academic/squizz: Remove .la files.	2022-03-08 09:44:29 +07:00
staden
STAR	academic/STAR: Updated to version 2.7.10a	2022-02-02 23:24:38 +07:00
stellarium
stringtie
SU2	academic/SU2: Mark as 64-bit only.	2022-03-26 01:20:12 +07:00
suitesparse	academic/suitesparse: Wrap README at 72 columns.	2022-03-12 14:39:07 -05:00
suitesparseconfig
sundials
sword	academic/sword: Remove .la files.	2022-02-16 08:20:04 +07:00
sword-data-kjv
t_coffee	academic/t_coffee: Updated for version 13.45.58.c355d11.	2022-03-01 19:35:46 +07:00
tabix-legacy
tiemu
tilem	academic/tilem: Fix for gcc >= 10.x.	2022-03-01 19:35:46 +07:00
tilem2
tkgate
topdraw
tophat	academic/tophat: Use -std=c++14.	2022-03-03 09:38:11 +00:00
treebest-ensembl	academic/treebest-ensembl: Wrap README at 72 columns.	2022-03-12 14:40:15 -05:00
TreeGraph	academic/TreeGraph: Use zulu-openjdk11.	2022-03-03 15:56:48 +07:00
treeviewx
trfind
trimmomatic	academic/trimmomatic: Use zulu-openjdk11.	2022-03-03 15:56:49 +07:00
tuxmath	academic/tuxmath: Rename blits. Remove dupe lan player.	2022-03-04 09:46:12 +00:00
tuxtype2
ucsc-blat
ugene	academic/ugene: Mark 32bit as UNSUPPORTED.	2022-03-26 01:20:15 +07:00
umfpack	academic/umfpack: Wrap README at 72 columns.	2022-03-12 14:40:59 -05:00
units	academic/units: updated for version 2.21	2021-08-01 00:35:44 +07:00
vcftools
verilator	academic/verilator: Make slack-desc ASCII.	2022-03-17 12:38:15 -04:00
verilog	academic/verilog: Updated for version 11.0.	2022-03-03 10:24:49 +00:00
veusz
ViennaRNA	academic/ViennaRNA: Remove .la files.	2022-03-08 09:44:25 +07:00
wehi-cellsymphony	academic/wehi-cellsymphony: Use zulu-openjdk11.	2022-03-03 15:56:49 +07:00
wehi-deid	academic/wehi-deid: Use zulu-openjdk11.	2022-03-03 15:56:49 +07:00
wehi-hackit	academic/wehi-hackit: Use zulu-openjdk11.	2022-03-03 15:56:49 +07:00
wehi-weasel	academic/wehi-weasel: Use zulu-openjdk11.	2022-03-03 15:56:48 +07:00
WEVOTE
wmcalc	academic/wmcalc: remove template comment.	2021-10-13 00:51:26 +07:00
WordNet
wxMaxima	academic/wxMaxima: Fix github tarball handling.	2022-03-01 19:35:44 +07:00
xcircuit
xephem
xflr5	academic/xflr5: Wrap README at 72 columns.	2022-03-12 14:41:26 -05:00
xfoil	academic/xfoil: Updated the patch to fix build.	2021-08-14 21:18:00 +07:00
xiphos	academic/xiphos: Fix build on current.	2021-12-03 18:12:12 +07:00
xoscope
z3	academic/z3: Updated for version 4.8.12.	2022-03-26 01:20:12 +07:00
ZeGrapher
zotero