mirror of
https://github.com/Ponce/slackbuilds
synced 2024-11-22 19:44:21 +01:00
18 lines
806 B
Text
18 lines
806 B
Text
LalnView is a graphical program for visualizing local alignments
|
|
between two sequences (protein or nucleic acids). Sequences are
|
|
represented by colored rectangles to give an overall picture of the
|
|
similarities between the two sequences. Blocks of similarity between
|
|
the two sequences are colored according to the degree of identity
|
|
between segments.
|
|
|
|
A suitable alignment tool for protein sequences is SIM at ExPASy:
|
|
https://web.expasy.org/sim/
|
|
|
|
SIM finds a user-defined number of best non-intersecting alignments
|
|
between two protein sequences or within a sequence. Once the alignment
|
|
is computed, you can view it using LalnView.
|
|
|
|
For details and citation:
|
|
Duret, L., Gasteiger, E. and Perriere, G. (1996) LalnView: a
|
|
graphical viewer for pairwise sequence alignments. Comput. Applic.
|
|
Biosci., 12, 507-510
|