| .. |
|
abella
|
|
|
|
abntex
|
|
|
|
aenig4
|
|
|
|
aline
|
|
|
|
aliview
|
|
|
|
amd
|
academic/amd: BUILD bump for SuiteSparse 5.8.1.
|
2021-01-17 08:45:04 +07:00 |
|
amplicon
|
|
|
|
amplifx
|
|
|
|
antiprism
|
academic/antiprism: Added -fpermissive to the CXXFLAGS.
|
2021-04-17 23:08:20 -05:00 |
|
archaeopteryx
|
|
|
|
aris
|
academic/aris: Updated for version 2. New maintainer.
|
2021-02-14 06:27:53 +07:00 |
|
arka
|
|
|
|
armadillo
|
|
|
|
arpack
|
|
|
|
arpack-ng
|
academic/arpack-ng: Updated for version 3.8.0.
|
2021-01-17 08:45:03 +07:00 |
|
artha
|
academic/artha: Updated for version 1.0.5.
|
2021-04-17 23:09:19 -05:00 |
|
avl
|
|
|
|
avogadro
|
|
|
|
bcftools
|
academic/bcftools: Updated for version 1.12.
|
2021-03-27 10:23:16 +07:00 |
|
bedGraphToBigWig
|
|
|
|
bedtools
|
|
|
|
biblesync
|
|
|
|
bibletime
|
academic/bibletime: Do not use hardcoded path.
|
2021-01-17 08:44:52 +07:00 |
|
bibus
|
|
|
|
biopython
|
|
|
|
boinc
|
academic/boinc: Updated for version 7.16.16
|
2021-04-10 17:04:57 +07:00 |
|
bowtie
|
|
|
|
bowtie2
|
|
|
|
bowtie2-legacy
|
|
|
|
bpp-core
|
|
|
|
bpp-phyl
|
|
|
|
bpp-phyl-omics
|
|
|
|
bpp-popgen
|
|
|
|
bpp-seq
|
|
|
|
bpp-seq-omics
|
|
|
|
bpp1.9-numcalc
|
|
|
|
bpp1.9-phyl
|
|
|
|
bpp1.9-seq
|
|
|
|
bpp1.9-utils
|
|
|
|
bppsuite
|
|
|
|
btf
|
academic/btf: BUILD bump for SuiteSparse 5.8.1.
|
2021-01-17 08:45:05 +07:00 |
|
bwa
|
|
|
|
cadabra2
|
academic/cadabra2: Updated for version 2.3.6.3.
|
2021-01-22 23:42:13 +07:00 |
|
CAFS_divergence
|
|
|
|
calc
|
|
|
|
calcoo
|
|
|
|
camd
|
academic/camd: BUILD bump for SuiteSparse 5.8.1.
|
2021-01-17 08:45:04 +07:00 |
|
cap3
|
|
|
|
CAPS_coevolution
|
|
|
|
cblas
|
academic/cblas: Updated for version 3.9.1.
|
2021-04-17 11:47:42 +07:00 |
|
ccolamd
|
academic/ccolamd: BUILD bump for SuiteSparse 5.8.1.
|
2021-01-17 08:45:04 +07:00 |
|
cdo
|
academic/cdo: Updated for version 1.9.10.
|
2021-02-14 06:28:01 +07:00 |
|
celestia
|
|
|
|
chartgeany
|
|
|
|
chemtool
|
|
|
|
cholmod
|
academic/cholmod: Updated for version 3.0.14.
|
2021-01-17 08:45:06 +07:00 |
|
cistrome-CEAS
|
|
|
|
cistrome-conductGO
|
|
|
|
cistrome-extra
|
|
|
|
cistrome-MACS
|
|
|
|
cistrome-mdseqpos
|
|
|
|
clark-ugene
|
|
|
|
cld2
|
|
|
|
clustalo
|
|
|
|
clustalw
|
|
|
|
clustalx
|
|
|
|
colamd
|
academic/colamd: BUILD bump for SuiteSparse 5.8.1.
|
2021-01-17 08:45:04 +07:00 |
|
colin
|
academic/colin: Various fixes. Rebuilt.
|
2020-11-14 17:16:40 +07:00 |
|
convertall
|
academic/convertall: Updated for version 0.8.0.
|
2021-02-21 00:05:02 +07:00 |
|
copasi
|
|
|
|
coq
|
|
|
|
cryptominisat
|
|
|
|
csparse
|
academic/csparse: BUILD bump for SuiteSparse 5.8.1.
|
2021-01-17 08:45:05 +07:00 |
|
cufflinks
|
|
|
|
cutadapt
|
|
|
|
cvc4
|
|
|
|
cxsparse
|
academic/cxsparse: BUILD bump for SuiteSparse 5.8.1.
|
2021-01-17 08:45:05 +07:00 |
|
dakota
|
|
|
|
Data2FCS
|
|
|
|
datamash
|
academic/datamash: Added (Basic numeric, textual & statistical ops)
|
2020-12-12 07:09:22 +07:00 |
|
DendroPy
|
|
|
|
diamond
|
|
|
|
drawtiming
|
|
|
|
ds9
|
academic/ds9: Updated for version 8.2.1.
|
2021-04-02 10:31:08 +07:00 |
|
easy_spice
|
|
|
|
ed-v6
|
|
|
|
edsim51di
|
|
|
|
EMBASSY
|
|
|
|
EMBOSS
|
|
|
|
engauge
|
|
|
|
ent
|
|
|
|
eprover
|
|
|
|
equalx
|
|
|
|
ess
|
|
|
|
evopedia_qt
|
|
|
|
exonerate
|
|
|
|
extrema
|
|
|
|
fann
|
|
|
|
fastqc
|
|
|
|
FCSalyzer
|
|
|
|
fet
|
academic/fet: Updated for version 5.49.1.
|
2021-03-20 11:00:42 +07:00 |
|
fiji
|
|
|
|
finchtv
|
|
|
|
fityk
|
|
|
|
flann
|
|
|
|
flashqard
|
|
|
|
flexbar
|
|
|
|
free42
|
|
|
|
FreeFem
|
|
|
|
g3data
|
|
|
|
galculator
|
academic/galculator: Fix build on current.
|
2021-01-24 00:00:48 +07:00 |
|
gaw3
|
|
|
|
Gblocks
|
|
|
|
gchemutils
|
|
|
|
gcompris
|
|
|
|
gcompris-qt
|
academic/gcompris-qt: Updated for version 1.1.
|
2021-03-27 09:15:33 +07:00 |
|
geda-gaf
|
academic/geda-gaf: Added the new dependency guile1.8.
|
2021-04-17 23:24:31 -05:00 |
|
gelemental
|
academic/gelemental: Patch for the newer gcc.
|
2021-04-17 23:24:32 -05:00 |
|
geneconv
|
|
|
|
genius
|
academic/genius: Added the new dependency vte2.
|
2021-04-17 23:24:32 -05:00 |
|
genometools
|
academic/genometools: Disabled some warnings-as-errors.
|
2021-04-17 23:24:32 -05:00 |
|
genpak
|
|
|
|
GeoGebra
|
|
|
|
geomview
|
|
|
|
gerbv
|
|
|
|
getdp
|
|
|
|
ggobi
|
|
|
|
ghemical
|
|
|
|
glpk
|
|
|
|
gmsh
|
|
|
|
gnucap
|
|
|
|
gp2fasta
|
|
|
|
gpredict
|
|
|
|
grace
|
|
|
|
gresistor
|
|
|
|
gretl
|
|
|
|
gri
|
|
|
|
Gridcoin-Research
|
academic/Gridcoin-Research: Patched for boost >= 1.73.0.
|
2021-04-17 22:53:30 -05:00 |
|
grpn
|
|
|
|
gspiceui
|
|
|
|
gtkwave
|
|
|
|
gtypist
|
|
|
|
gwyddion
|
academic/gwyddion: Updated for version 2.58.
|
2021-02-14 06:28:01 +07:00 |
|
h5utils
|
|
|
|
harminv
|
|
|
|
HMMER
|
|
|
|
hyphy
|
|
|
|
IGV
|
academic/IGV: Added (Integrative Genomics Viewer)
|
2020-11-22 01:14:24 +07:00 |
|
io_lib
|
|
|
|
irsim
|
|
|
|
isoelectric-point
|
|
|
|
iTest
|
|
|
|
itex2mml
|
|
|
|
ITK
|
academic/ITK: Do not use hardcoded path.
|
2021-01-17 08:44:52 +07:00 |
|
jalview
|
|
|
|
jellyfish_k-mer
|
|
|
|
jpicedt
|
|
|
|
jugglinglab
|
|
|
|
karma
|
|
|
|
kiwisolver
|
|
|
|
klavaro
|
|
|
|
klu
|
academic/klu: BUILD bump for SuiteSparse 5.8.1.
|
2021-01-17 08:45:06 +07:00 |
|
knime
|
|
|
|
kraken
|
|
|
|
Kst
|
|
|
|
ktikz
|
|
|
|
kurso
|
|
|
|
labplot2
|
|
|
|
ladr
|
|
|
|
lalnview
|
|
|
|
lapack95
|
|
|
|
lapacke
|
academic/lapacke: Updated for version 3.9.1.
|
2021-04-17 11:47:43 +07:00 |
|
latex2html
|
|
|
|
ldl
|
academic/ldl: BUILD bump for SuiteSparse 5.8.1.
|
2021-01-17 08:45:05 +07:00 |
|
libghemical
|
|
|
|
link-grammar
|
|
|
|
locarna
|
|
|
|
loggerpro
|
|
|
|
lpsolve
|
|
|
|
mafft
|
|
|
|
magic
|
|
|
|
mathics
|
|
|
|
mathomatic
|
|
|
|
matio
|
|
|
|
maxima
|
academic/maxima: Updated for version 5.44.0.
|
2021-03-20 11:00:46 +07:00 |
|
meep
|
academic/meep: Updated for version 1.17.1.
|
2021-01-30 09:19:18 +07:00 |
|
megax
|
|
|
|
meme-db-gomo
|
|
|
|
meme-db-motif
|
|
|
|
meme-db-tgene
|
|
|
|
meme-suite
|
|
|
|
mendeleydesktop
|
|
|
|
MetaPhlAn2
|
|
|
|
metis
|
|
|
|
mkDSSP
|
|
|
|
Mnemosyne
|
|
|
|
mpb
|
academic/mpb: Updated for version 1.11.1.
|
2021-01-30 09:23:19 +07:00 |
|
mrbayes
|
|
|
|
muscle
|
|
|
|
ncbi-blast
|
|
|
|
ncbi-blast+
|
|
|
|
ncbi-rmblastn
|
|
|
|
nco
|
academic/nco: Updated for version 4.9.7.
|
2021-02-14 06:28:00 +07:00 |
|
ncview
|
|
|
|
ngspice
|
academic/ngspice: KiCAD build fixes.
|
2021-03-13 09:02:37 +07:00 |
|
novocraft
|
|
|
|
octave
|
academic/octave: Updated for version 6.2.0.
|
2021-04-17 11:47:43 +07:00 |
|
OpenFOAM
|
|
|
|
pal2nal
|
|
|
|
paml
|
|
|
|
pamlX
|
|
|
|
papi
|
|
|
|
pari
|
academic/pari: Updated for version 2.13.1.
|
2021-04-17 11:47:40 +07:00 |
|
parmetis
|
|
|
|
patsy
|
|
|
|
pcalc
|
|
|
|
pcb
|
|
|
|
perlprimer
|
|
|
|
PhyML
|
|
|
|
pianobooster
|
|
|
|
plasmidomics
|
|
|
|
prank-msa
|
|
|
|
primer3
|
|
|
|
pspp
|
|
|
|
pulseview
|
|
|
|
PyAMG
|
|
|
|
pyCRAC
|
academic/pyCRAC: Updated for version 1.5.0.
|
2021-02-27 08:24:29 +07:00 |
|
pyfits
|
|
|
|
pysam
|
|
|
|
qalculate-gtk
|
|
|
|
qcl
|
|
|
|
qhull
|
|
|
|
qrupdate
|
|
|
|
QtiPlot
|
|
|
|
qucs
|
|
|
|
R
|
|
|
|
RAxML
|
|
|
|
rbio
|
academic/rbio: BUILD bump for SuiteSparse 5.8.1.
|
2021-01-17 08:45:05 +07:00 |
|
reduce-algebra
|
|
|
|
RepeatMasker
|
|
|
|
root
|
|
|
|
rpy2
|
academic/rpy2: Updated for version 3.4.3.
|
2021-04-02 09:17:41 +07:00 |
|
sage
|
|
|
|
sage-bin
|
|
|
|
samtools
|
academic/samtools: Updated for version 1.12.
|
2021-03-27 10:23:15 +07:00 |
|
samtools-legacy
|
|
|
|
scidavis
|
|
|
|
scilab
|
|
|
|
scipy
|
|
|
|
scipy3
|
|
|
|
seaview
|
|
|
|
seqkit
|
|
|
|
SeqMonk
|
academic/SeqMonk: Added (A Mapped Sequence Analysis tool)
|
2020-10-31 11:15:27 +07:00 |
|
sequence-analysis
|
|
|
|
Shark
|
|
|
|
sigrok-cli
|
|
|
|
siril
|
|
|
|
slatec
|
|
|
|
smath-studio
|
|
|
|
snpEff
|
|
|
|
solfege
|
|
|
|
spades
|
|
|
|
speedcrunch
|
|
|
|
spiceopus
|
|
|
|
spidey
|
|
|
|
spqr
|
academic/spqr: Updated for SuiteSparse 5.8.1.
|
2021-01-17 08:45:06 +07:00 |
|
squizz
|
|
|
|
staden
|
|
|
|
STAR
|
academic/STAR: Updated for version 2.7.8a.
|
2021-03-06 11:11:55 +07:00 |
|
stellarium
|
academic/stellarium: Updated for version 0.20.4.
|
2021-01-15 19:33:43 +00:00 |
|
stringtie
|
|
|
|
SU2
|
|
|
|
suitesparse
|
academic/suitesparse: Update README
|
2021-01-17 08:45:02 +07:00 |
|
suitesparseconfig
|
academic/suitesparseconfig: Updated for version 5.8.1.
|
2021-01-17 08:45:04 +07:00 |
|
sundials
|
academic/sundials: Fix download link.
|
2021-04-17 11:47:50 +07:00 |
|
sword
|
|
|
|
sword-data-kjv
|
academic/sword-data-kjv: Updated for version 1.8.1_1.
|
2021-04-10 17:04:36 +07:00 |
|
t_coffee
|
|
|
|
tabix-legacy
|
|
|
|
tiemu
|
|
|
|
tilem
|
|
|
|
tilem2
|
|
|
|
tkgate
|
|
|
|
topdraw
|
|
|
|
tophat
|
|
|
|
treebest-ensembl
|
|
|
|
TreeGraph
|
|
|
|
treerecs
|
|
|
|
treeviewx
|
|
|
|
trfind
|
|
|
|
trimmomatic
|
|
|
|
tuxmath
|
|
|
|
tuxtype2
|
|
|
|
ucsc-blat
|
|
|
|
ugene
|
|
|
|
umfpack
|
academic/umfpack: Updated for SuiteSparse 5.8.1.
|
2021-01-17 08:45:06 +07:00 |
|
units
|
|
|
|
vCAPS_coevolution
|
|
|
|
vcftools
|
|
|
|
verilator
|
|
|
|
verilog
|
|
|
|
veusz
|
academic/veusz: Updated for version 3.3.1.
|
2020-12-12 07:09:22 +07:00 |
|
ViennaRNA
|
academic/ViennaRNA: Update DOWNLOAD.
|
2020-12-18 12:41:29 +07:00 |
|
wehi-cellsymphony
|
|
|
|
wehi-deid
|
|
|
|
wehi-hackit
|
|
|
|
wehi-weasel
|
|
|
|
WEVOTE
|
|
|
|
wmcalc
|
|
|
|
WordNet
|
|
|
|
wxmacmolplt
|
|
|
|
wxMaxima
|
academic/wxMaxima: Updated for version 21.01.0.
|
2021-04-10 17:04:42 +07:00 |
|
xcircuit
|
|
|
|
xephem
|
academic/xephem: Fix README.
|
2020-10-17 09:37:38 +07:00 |
|
xflr5
|
|
|
|
xfoil
|
academic/xfoil: Fix README.
|
2020-10-17 09:37:39 +07:00 |
|
xiphos
|
academic/xiphos: Do not use hardcoded path.
|
2021-01-17 08:44:53 +07:00 |
|
xoscope
|
|
|
|
Xyce
|
|
|
|
z3
|
|
|
|
ZeGrapher
|
|
|
|
zotero
|
|
|
