mirror of
https://github.com/Ponce/slackbuilds
synced 2024-11-18 22:06:04 +01:00
12 lines
578 B
Text
12 lines
578 B
Text
TopHat is a fast splice junction mapper for RNA-Seq reads. It aligns
|
|
RNA-Seq reads to mammalian-sized genomes using the ultra high-throughput
|
|
short read aligner Bowtie, and then analyzes the mapping results to
|
|
identify splice junctions between exons.
|
|
|
|
TopHat is a collaborative effort between the Institute of Genetic
|
|
Medicine at Johns Hopkins University, the Departments of Mathematics
|
|
and Molecular and Cell Biology at the University of California,
|
|
Berkeley and the Department of Stem Cell and Regenerative Biology at
|
|
Harvard University.
|
|
|
|
A recommended dependency is bowtie2.
|