afhpayne 875df0686e academic/R: update 4.3.2 ... Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>		2023-12-16 07:55:44 +07:00
..
3D-ICE
abntex
acl2	academic/acl2: Added (Computational Logic for LiSP).	2023-07-18 09:31:16 +07:00
aenig4
aeskulap
aline	academic/aline: update source.	2023-09-11 22:18:50 +07:00
aliview
AlphaPlot
amd	academic/amd: Align with template.	2023-05-20 11:17:28 +07:00
amplicon
amplifx	academic/amplifx: Fix ARCH section.	2023-05-20 11:17:57 +07:00
antiprism
archaeopteryx
aris
arka
armadillo
arpack
arpack-ng	academic/arpack-ng: Updated for version 3.9.0	2023-08-19 09:15:34 +07:00
artha
avl
avogadroapp	academic/avogadroapp: Update README.	2023-11-06 06:10:13 +07:00
avogadrolibs	academic/avogadrolibs: Update README.	2023-11-06 06:09:03 +07:00
bcftools	academic/bcftools: Upgrade to version 1.18	2023-09-23 08:31:12 +07:00
bedGraphToBigWig
bedtools	academic/bedtools: Updated for version 2.31.0.	2023-06-20 19:46:04 +07:00
biblesync
bibletime
bibus
biopython	academic/biopython: Updated for version 1.81.	2023-04-22 11:38:31 +07:00
boinc	academic/boinc: Fix rc.boinc variables, remove extraneous characters	2023-05-13 19:27:30 +07:00
bowtie
bowtie2	academic/bowtie2: upgrade to version 2.5.2	2023-11-08 00:00:31 +07:00
bowtie2-legacy
bpp-core
bpp-phyl
bpp-phyl-omics
bpp-popgen
bpp-seq
bpp-seq-omics
bpp1.9-numcalc
bpp1.9-phyl
bpp1.9-seq
bpp1.9-utils
bppsuite
btf	academic/btf: Align with template.	2023-05-20 11:17:28 +07:00
bwa
cadabra2	academic/cadabra2: Updated for version 2.4.5.	2023-11-18 09:03:36 +07:00
CAFS_divergence	academic/CAFS_divergence: Fix ARCH section.	2023-05-20 11:17:57 +07:00
calc	academic/calc: Updated for version 2.14.1.5.	2023-05-27 08:08:51 +07:00
calcoo
camd	academic/camd: Align with template.	2023-05-20 11:17:28 +07:00
cap3
CAPS_coevolution	academic/CAPS_coevolution: Fix ARCH section.	2023-05-20 11:17:57 +07:00
cblas	academic/cblas: Align with template.	2023-05-20 11:17:28 +07:00
ccolamd	academic/ccolamd: Align with template.	2023-05-20 11:17:29 +07:00
cdo	academic/cdo: Updated for version 2.3.0.	2023-10-21 17:20:14 +07:00
celestia
chartgeany
chemtool
cholmod	academic/cholmod: Align with template.	2023-05-20 11:17:29 +07:00
cistrome-CEAS
cistrome-conductGO
cistrome-extra
cistrome-MACS	academic/cistrome-MACS: update source.	2023-09-11 22:18:50 +07:00
cistrome-mdseqpos
clark-ugene
cld2
clustalo
clustalw
clustalx
colamd	academic/colamd: Align with template.	2023-05-20 11:17:29 +07:00
colin	academic/colin: Use template TMP assignment.	2023-05-20 11:17:27 +07:00
convertall
copasi	academic/copasi: Updated for version 4.42.284.	2023-12-02 07:44:12 +07:00
cryptominisat
csparse	academic/csparse: Align with template.	2023-05-20 11:17:29 +07:00
cufflinks
cutadapt
cvc4	academic/cvc4: Update dependencies.	2023-12-02 07:54:23 +07:00
cxsparse	academic/cxsparse: Align with template.	2023-05-20 11:17:29 +07:00
dakota
Data2FCS
datamash
DendroPy
diamond
dimod
DRAMPower
DRAMSim2
DRAMsim3
DRAMSys
ds9
dwave-cloud-client
dwave-greedy
dwave-hybrid
dwave-inspector
dwave-neal	academic/dwave-neal: Update DEP.	2023-04-29 09:30:05 +07:00
dwave-networkx
dwave-ocean-sdk
dwave-preprocessing
dwave-system
dwave-tabu
dwavebinarycsp
easy_spice
ed-v6	Daves unified names	2023-05-06 08:28:36 +07:00
edsim51di
elk
EMBASSY
EMBOSS
engauge
ent
ephem	academic/ephem: Added (an astronomy program).	2023-08-12 09:46:19 +09:00
eprover
equalx
ess
evopedia_qt
exonerate
extrema
fann
fastqc	academic/fastqc: cleanup doinst.sh, info updated	2023-09-23 08:31:12 +07:00
FastTree	academic/FastTree: Added (Infers approximately-ML phylogenetic).	2023-09-11 15:05:54 +07:00
FCSalyzer
fet	academic/fet: Update LICENSE on README.	2023-12-13 01:48:21 +07:00
FigTree	academic/FigTree: Add (A graphical viewer of phylogenetic trees).	2023-09-11 14:31:54 +07:00
fiji	academic/fiji: Updated for version 20230801_1717.	2023-09-17 00:10:15 +07:00
finchtv	academic/finchtv: Fix ARCH section.	2023-05-20 11:17:56 +07:00
fityk	academic/fityk: Updated for version 1.3.2.	2023-04-08 09:16:26 +07:00
flann
flexbar	academic/flexbar: incl. patches for newer tbb	2023-11-08 00:02:01 +07:00
free42
FreeFem	academic/FreeFem: Updated for version 4.14.	2023-12-13 01:48:21 +07:00
g3data	academic/g3data: Fix DOWNLOAD.	2023-09-17 00:10:23 +07:00
Gabedit
gaiasky	academic/gaiasky: Updated for version 3.5.7.	2023-11-11 08:07:55 +07:00
galculator
gaw3	academic/gaw3: Updated for version 20220315.	2023-04-01 09:14:08 +07:00
Gblocks	academic/Gblocks: Update script.	2023-09-13 21:34:07 +07:00
gchemutils
gcompris-qt	academic/gcompris-qt: Updated for version 3.3.	2023-06-10 09:28:37 +07:00
gdstk	academic/gdstk: Added (GDSII / OASIS file library).	2023-12-09 07:50:06 +07:00
geda-gaf
gelemental	academic/gelemental: Updated for version 2.0.2.	2023-04-22 11:38:28 +07:00
gem5
geneconv
genius
genometools
genpak
GeoGebra
geomview
gephi	academic/gephi: Added (Open Graph Viz Platform).	2023-07-19 10:00:21 +07:00
gerbv	academic/gerbv: Orphaned.	2023-12-16 07:16:40 +07:00
getdp
getfem
ggobi
ghemical
glpk
glvis
gmsh
gnucap
gp2fasta
gpredict
grace
gresistor	academic/gresistor: Align with template.	2023-05-20 11:17:29 +07:00
gretl
gri
Gridcoin-Research	academic/Gridcoin-Research: Updated for version 5.4.5.0	2023-04-29 18:11:56 +07:00
gromacs	academic/gromacs: Minor template nitpick.	2023-02-18 10:07:13 +07:00
grpn
gspiceui	academic/gspiceui: Updated for version 1.2.87.	2023-06-03 10:38:23 +07:00
gtkwave
gtypist
gwyddion	academic/gwyddion: Updated for version 2.64.	2023-11-04 16:39:16 +07:00
h5utils	academic/h5utils: Updated for version 1.13.2.	2023-02-18 10:06:44 +07:00
harminv	academic/harminv: Updated for version 1.4.2.	2023-02-18 10:06:44 +07:00
hdfview	academic/hdfview: Added (visualization and exploration software).	2023-11-19 21:08:04 +07:00
HMMER	academic/HMMER: Updated for version 3.4.	2023-09-13 21:53:45 +07:00
hyphy	academic/hyphy: Updated for version 2.5.50.	2023-05-13 19:27:12 +07:00
IGV	academic/IGV: Updated for version 2.16.2.	2023-09-17 00:10:15 +07:00
io_lib	academic/io_lib: Updated for version 1.15.0.	2023-05-13 19:27:04 +07:00
iqtree	academic/iqtree: Updated for version 2.2.2.7.	2023-09-13 21:53:07 +07:00
irsim
Isabelle	academic/Isabelle: Added (proof assistant).	2023-07-18 08:47:19 +07:00
isoelectric-point
iTest
itex2mml
ITK
jalview	academic/jalview: Updated for version 2.11.2.7.	2023-09-17 00:10:16 +07:00
jellyfish_k-mer
jpicedt
jugglinglab
kalign	academic/kalign: Added (multipelsquence alignment program).	2023-09-11 14:39:00 +07:00
karma
klavaro
klu	academic/klu: Align with template.	2023-05-20 11:17:29 +07:00
knime
kraken
Kst	academic/Kst: Updated for version 20221025_5fdd819.	2023-02-22 12:09:51 +07:00
ktikz
kurso
labplot2	academic/labplot2: Fix double compilation.	2023-08-19 09:15:16 +07:00
ladr
laghos
lalnview
lammps	academic/lammps: Added (molecular simulator).	2023-09-03 09:37:13 +07:00
lapack95
lapacke	academic/lapacke: Align with template.	2023-05-20 11:17:30 +07:00
latex2html
ldl	academic/ldl: Align with template.	2023-05-20 11:17:30 +07:00
libghemical
link-grammar
locarna
lpsolve
mafft	academic/mafft: Updated for version 7.520.	2023-05-13 19:27:12 +07:00
magic
mathics
mathjax2	academic/mathjax2: Update maintainer's email	2023-06-04 23:13:23 +07:00
mathomatic
matio
maxima	academic/maxima: Updated for version 5.47.0.	2023-07-02 21:01:11 +07:00
meep	academic/meep: Fix 32bit build.	2023-07-22 15:52:46 +07:00
megax	academic/megax: Fix and mv ARCH sect.	2023-05-20 11:17:56 +07:00
meme-db-gomo
meme-db-motif
meme-db-tgene
meme-suite	academic/meme-suite: Updated for version 5.5.4.	2023-09-13 21:51:25 +07:00
mendeleydesktop	academic/mendeleydesktop: Fix ARCH.	2023-06-03 10:38:30 +07:00
metalwalls
MetaPhlAn2
metis	academic/metis: Align with template.	2023-05-20 11:17:30 +07:00
mfem
minorminer
mkDSSP
molequeue
mpb
mrbayes
mumsa
muscle
muscle5
ncbi-blast	academic/ncbi-blast: Fix and mv ARCH sect.	2023-05-20 11:17:56 +07:00
ncbi-blast+	academic/ncbi-blast+: Updated for version 2.14.1.	2023-09-13 21:52:06 +07:00
ncbi-edirect	academic/ncbi-edirect: Updated for version 20.5.20231007.	2023-10-14 10:32:26 +07:00
ncbi-rmblastn
nco	academic/nco: Updated for version 5.1.9.	2023-11-11 08:08:33 +07:00
ncview
ngspice	academic/ngspice: Updated for version 41.	2023-08-19 09:15:20 +07:00
novocraft
NWChem
octave	academic/octave: Updated for version 8.3.0	2023-08-19 09:15:33 +07:00
openboard	academic/openboard: Updated for version 1.7.0.	2023-12-13 01:48:16 +07:00
OpenFOAM
OpenMM
OpenVSP
pal2nal
paml	academic/paml: Updated for version 4.10.6.	2023-04-22 11:38:27 +07:00
pamlX	academic/pamlX: Fix paml docs dir.	2023-04-22 11:38:28 +07:00
papi
pari
parmetis
patsy
pcalc
pcb
penaltymodel
perlprimer
PhyML
pianobooster
plasmidomics
plus42	academic/plus42: Updated for version 1.0.21.	2023-08-26 19:07:00 +07:00
pomoxis	academic/pomoxis: Added (bioinformatics tools for nanopore research)	2023-03-18 09:50:22 +07:00
prank-msa
primer3	academic/primer3: Updated for version 2.6.1.	2023-06-20 19:52:38 +07:00
pspp	academic/pspp: Updated for version 1.6.2.	2023-03-04 07:16:37 +07:00
pulseview
PyAMG
pyCRAC	academic/pyCRAC: Updated to version 1.5.2; crac_pipeline no longer included (see README)	2023-04-15 06:41:28 +07:00
pyfits	academic/pyfits: Align with template.	2023-05-20 11:17:27 +07:00
pysam	academic/pysam: set to use internal htslib	2023-09-23 08:31:12 +07:00
python2-kiwisolver	academic/python2-kiwisolver: Align with template.	2023-05-20 11:17:41 +07:00
python2-scipy	academic/python2-scipy: Align with template.	2023-05-20 11:17:41 +07:00
python3-ase
python3-scipy	academic/python3-scipy: Updated for version 1.11.4.	2023-12-09 07:50:10 +07:00
qalculate-gtk
qcl
qhull	academic/qhull: Updated for version 8.0.2.	2023-12-01 08:55:49 +07:00
qrupdate	academic/qrupdate: Align with template.	2023-05-20 11:17:30 +07:00
qucs
qucs-s	academic/qucs-s: Updated for version 2.1.0.	2023-10-28 09:21:03 +07:00
R	academic/R: update 4.3.2	2023-12-16 07:55:44 +07:00
ramulator
RAxML
rbio	academic/rbio: Align with template.	2023-05-20 11:17:27 +07:00
reduce-algebra
RepeatMasker	academic/RepeatMasker: Updated for version 4.1.5.	2023-09-17 00:10:17 +07:00
root	academic/root: Updated for v6.28.08	2023-11-04 16:39:16 +07:00
rpy2	academic/rpy2: replace setup.py usage	2023-12-13 01:48:21 +07:00
sage	academic/sage: Updated for 10.1	2023-09-29 10:35:53 +07:00
sage-bin
samtools	academic/samtools: Upgrade to version 1.18	2023-09-23 08:31:12 +07:00
samtools-legacy
scidavis
scilab
scmutils	academic/scmutils: Added (scm utils).	2023-11-29 18:35:27 +07:00
seaview	academic/seaview: treerecs added to REQUIRES.	2023-04-22 11:38:31 +07:00
seqkit	academic/seqkit: Updated for version 2.5.1.	2023-09-23 08:42:56 +07:00
SeqMonk
sequence-analysis
Shark
sigrok-cli
sim	academic/sim: Added (local similarity program).	2023-09-11 22:18:38 +07:00
SimEng
siril
smath-studio
snpEff
solfege
spades	academic/spades: Updated for version 3.15.5.	2023-04-21 09:30:46 +07:00
speedcrunch
spiceopus
spidey	academic/spidey: Fix and mv ARCH sect.	2023-05-20 11:17:56 +07:00
spqr	academic/spqr: Disable tbb integration	2023-11-11 08:08:42 +07:00
squizz
staden	academic/staden: A few enhancements.	2023-05-13 19:27:12 +07:00
STAR	academic/STAR:Upgrade to version 2.7.11a	2023-09-23 08:31:13 +07:00
stellarium	academic/stellarium: Updated for version 23.1.	2023-05-06 08:28:22 +07:00
stellarsolver
stringtie
SU2	academic/SU2: Add network warning to README.	2023-09-23 11:33:27 +07:00
suitesparse	academic/suitesparse: Ensure correct linking	2023-11-25 22:12:39 +07:00
suitesparseconfig	academic/suitesparseconfig: Align with template.	2023-05-20 11:17:30 +07:00
sundials
sword
sword-data-kjv	academic/sword-data-kjv: Update data file.	2023-12-06 11:01:58 +07:00
t_coffee
tabix-legacy
tiemu	academic/tiemu: New maintainer.	2023-02-25 09:18:10 +07:00
tilem
tilem2
tkgate
topdraw	academic/topdraw: update source.	2023-09-11 22:18:50 +07:00
tophat
treebest-ensembl
TreeGraph
treerecs	academic/treerecs: Added (Treerecs: a tree reconciliation tool)	2023-04-22 11:38:30 +07:00
treeviewx	academic/treeviewx: update source.	2023-09-11 22:18:50 +07:00
trfind
trimmomatic
tuxmath
tuxtype2
ucsc-blat	academic/ucsc-blat: Fix and mv ARCH sect, http->https.	2023-05-20 11:17:56 +07:00
ugene	academic/ugene: Updated for version 48.1.	2023-09-17 00:10:15 +07:00
umfpack	academic/umfpack: Align with template.	2023-05-20 11:17:31 +07:00
units	academic/units: Fix paths and run install-info	2023-08-05 10:08:41 +07:00
vCAPS_coevolution
vcftools
velocyto	academic/velocyto: Use correct github URL.	2023-03-25 10:02:01 +07:00
verilator
verilog
veusz
ViennaRNA	academic/ViennaRNA: upgrade to version 2.6.4; edit README	2023-10-10 06:34:40 +07:00
voro++
wehi-cellsymphony
wehi-deid
wehi-hackit
wehi-weasel	academic/wehi-weasel: Updated for version 3.8.0.18.	2023-09-17 00:10:15 +07:00
WEVOTE
wise	academic/wise: Update script.	2023-09-23 08:42:56 +07:00
wmcalc
WolframEngine	academic/WolframEngine: Updated for version 13.3.0.	2023-09-09 10:14:14 +07:00
WordNet
wxMaxima	academic/wxMaxima: Use DESTDIR properly.	2023-07-08 16:41:57 +07:00
x48
xcircuit	academic/xcircuit: Updated for version 3.10.30. New maintainer.	2023-03-25 10:01:45 +07:00
xephem	academic/xephem: Updated for version 4.1.0.	2023-08-12 09:42:58 +09:00
xflr5
xfoil
xiphos	academic/xiphos: Update DEP.	2023-02-25 08:54:00 +07:00
xoscope	academic/xoscope: Align with template.	2023-05-20 11:17:31 +07:00
xschem	academic/xschem: Update script.	2023-12-06 10:09:31 +07:00
xsimd	academic/xsimd: Correct email and clean up SlackBuild	2023-09-23 10:59:55 +07:00
yices2
z3
ZeGrapher
zotero	academic/zotero: update 6.0.30	2023-12-16 07:44:41 +07:00
zotero-gtk2	academic/zotero-gtk2: Added (Collect and share research sources)	2023-05-06 08:28:23 +07:00