| .. |
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3D-ICE
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abntex
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acl2
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academic/acl2: Added (Computational Logic for LiSP).
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2023-07-18 09:31:16 +07:00 |
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aenig4
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aeskulap
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aline
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academic/aline: update source.
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2023-09-11 22:18:50 +07:00 |
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aliview
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AlphaPlot
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amd
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academic/amd: Align with template.
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2023-05-20 11:17:28 +07:00 |
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amplicon
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amplifx
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academic/amplifx: Fix ARCH section.
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2023-05-20 11:17:57 +07:00 |
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antiprism
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archaeopteryx
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aris
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arka
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armadillo
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arpack
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arpack-ng
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academic/arpack-ng: Updated for version 3.9.1
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2024-01-13 07:14:25 +07:00 |
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artha
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AstroImageJ
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academic/AstroImageJ: Update to 5.3.2.00
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2024-01-22 09:40:26 +07:00 |
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avl
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avogadroapp
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academic/avogadroapp: Update README.
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2023-11-06 06:10:13 +07:00 |
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avogadrolibs
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academic/avogadrolibs: Update README.
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2023-11-06 06:09:03 +07:00 |
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bcftools
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academic/bcftools: Updated to version 1.21
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2024-10-12 09:40:52 +07:00 |
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bedGraphToBigWig
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bedtools
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academic/bedtools: Updated for version 2.31.0.
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2023-06-20 19:46:04 +07:00 |
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biblesync
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bibletime
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bibus
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biopython
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academic/biopython: Updated for version 1.81.
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2023-04-22 11:38:31 +07:00 |
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boinc
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academic/boinc: Updated for version 7.24.1
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2024-01-20 09:16:23 +07:00 |
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bowtie
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bowtie2
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academic/bowtie2: Upgrade to version 2.5.4
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2024-07-28 07:26:37 +07:00 |
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bowtie2-legacy
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bpp-core
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bpp-phyl
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bpp-phyl-omics
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bpp-popgen
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bpp-seq
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bpp-seq-omics
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bpp1.9-numcalc
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bpp1.9-phyl
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bpp1.9-seq
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bpp1.9-utils
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bppsuite
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academic/bppsuite: Fix redundant deps.
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2023-12-22 07:59:38 +07:00 |
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btf
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academic/btf: Align with template.
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2023-05-20 11:17:28 +07:00 |
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bwa
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cadabra2
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academic/cadabra2: Update script.
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2024-06-28 19:01:24 +07:00 |
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CAFS_divergence
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academic/CAFS_divergence: Fix ARCH section.
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2023-05-20 11:17:57 +07:00 |
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calc
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academic/calc: Updated for version 2.14.1.5.
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2023-05-27 08:08:51 +07:00 |
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calcoo
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camd
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academic/camd: Align with template.
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2023-05-20 11:17:28 +07:00 |
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cap3
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CAPS_coevolution
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academic/CAPS_coevolution: Fix ARCH section.
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2023-05-20 11:17:57 +07:00 |
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cblas
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academic/cblas: Updated for version 3.12.0
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2024-01-13 07:14:25 +07:00 |
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ccolamd
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academic/ccolamd: Align with template.
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2023-05-20 11:17:29 +07:00 |
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cdo
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academic/cdo: Updated for version 2.4.4.
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2024-10-17 09:06:48 +07:00 |
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celestia
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academic/celestia: Build with lua 5.4.
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2024-11-02 19:28:40 +07:00 |
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chartgeany
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chemtool
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cholmod
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academic/cholmod: Fix redundant deps.
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2023-12-22 07:59:38 +07:00 |
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cistrome-CEAS
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cistrome-conductGO
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cistrome-extra
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cistrome-MACS
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academic/cistrome-MACS: update source.
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2023-09-11 22:18:50 +07:00 |
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cistrome-mdseqpos
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academic/cistrome-mdseqpos: Fix source URL.
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2024-09-16 22:38:24 +07:00 |
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clark-ugene
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cld2
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clustalo
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clustalw
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clustalx
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colamd
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academic/colamd: Align with template.
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2023-05-20 11:17:29 +07:00 |
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colin
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academic/colin: Use template TMP assignment.
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2023-05-20 11:17:27 +07:00 |
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convertall
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copasi
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academic/copasi: Updated for version 4.44.295.
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2024-07-09 21:11:10 +07:00 |
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cryptominisat
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academic/cryptominisat: Fix build.
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2024-03-24 17:43:58 +07:00 |
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csparse
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academic/csparse: Align with template.
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2023-05-20 11:17:29 +07:00 |
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cufflinks
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cutadapt
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cvc4
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academic/cvc4: Update dependencies.
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2023-12-02 07:54:23 +07:00 |
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cxsparse
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academic/cxsparse: Align with template.
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2023-05-20 11:17:29 +07:00 |
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dakota
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academic/dakota: Fix redundant deps.
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2023-12-22 07:59:38 +07:00 |
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Data2FCS
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datamash
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DendroPy
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diamond
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dimod
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DRAMPower
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DRAMSim2
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DRAMsim3
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DRAMSys
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ds9
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academic/ds9: Updated for version 8.4.1.
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2023-02-04 07:19:56 +07:00 |
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dwave-cloud-client
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dwave-greedy
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dwave-hybrid
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dwave-inspector
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dwave-neal
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academic/dwave-neal: Fix redundant deps.
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2023-12-22 07:59:38 +07:00 |
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dwave-networkx
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dwave-ocean-sdk
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dwave-preprocessing
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dwave-system
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dwave-tabu
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dwavebinarycsp
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easy_spice
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ed-v6
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Daves unified names
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2023-05-06 08:28:36 +07:00 |
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edsim51di
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academic/edsim51di: Updated for version 2.1.36.
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2024-09-08 08:28:58 +07:00 |
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elk
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EMBASSY
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EMBOSS
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engauge
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academic/engauge: Fix build.
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2024-05-21 10:53:26 +07:00 |
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ent
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academic/ent: Use https URLs.
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2024-03-23 08:17:07 +07:00 |
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ephem
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academic/ephem: Added (an astronomy program).
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2023-08-12 09:46:19 +09:00 |
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eprover
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academic/eprover: Updated for version 3.1.
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2024-10-08 10:13:51 +07:00 |
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equalx
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ess
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evopedia_qt
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exonerate
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extrema
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fann
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fastqc
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academic/fastqc: cleanup doinst.sh, info updated
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2023-09-23 08:31:12 +07:00 |
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FastTree
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academic/FastTree: Added (Infers approximately-ML phylogenetic).
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2023-09-11 15:05:54 +07:00 |
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FCSalyzer
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fet
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academic/fet: Updated for version 6.27.0.
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2024-11-07 22:29:55 +07:00 |
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FigTree
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academic/FigTree: Add (A graphical viewer of phylogenetic trees).
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2023-09-11 14:31:54 +07:00 |
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fiji
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academic/fiji: Updated for version 20230801_1717.
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2023-09-17 00:10:15 +07:00 |
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finchtv
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academic/finchtv: Fix ARCH section.
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2023-05-20 11:17:56 +07:00 |
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fityk
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academic/fityk: Bump BUILD for new lua.
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2024-11-02 19:28:42 +07:00 |
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flann
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flexbar
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academic/flexbar: incl. patches for newer tbb
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2023-11-08 00:02:01 +07:00 |
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free42
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FreeFem
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academic/FreeFem: Updated for version 4.14.
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2023-12-13 01:48:21 +07:00 |
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g3data
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academic/g3data: Fix DOWNLOAD.
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2023-09-17 00:10:23 +07:00 |
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Gabedit
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gaiasky
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academic/gaiasky: Updated for version 3.6.3.
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2024-08-27 12:38:28 +07:00 |
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galculator
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gaw3
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academic/gaw3: Updated for version 20220315.
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2023-04-01 09:14:08 +07:00 |
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Gblocks
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academic/Gblocks: Update script.
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2023-09-13 21:34:07 +07:00 |
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gchemutils
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gcompris-qt
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academic/gcompris-qt: Updated for version 4.2.
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2024-09-20 07:50:55 +07:00 |
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gdstk
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academic/gdstk: Added (GDSII / OASIS file library).
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2023-12-09 07:50:06 +07:00 |
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geda-gaf
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gelemental
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academic/gelemental: Updated for version 2.0.2.
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2023-04-22 11:38:28 +07:00 |
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gem5
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geneconv
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genius
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genometools
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genpak
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GeoGebra
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geomview
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academic/geomview: Updated for version 1.9.5.
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2023-02-04 07:19:52 +07:00 |
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gephi
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academic/gephi: Fix .info.
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2024-08-08 13:26:09 +07:00 |
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gerbv
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academic/gerbv: Updated for version 2.10.0.
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2024-01-08 10:06:20 +07:00 |
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getdp
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getfem
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ggobi
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ghemical
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glpk
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glvis
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gmsh
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academic/gmsh: Updated for version 4.13.1.
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2024-06-18 10:14:30 +07:00 |
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gnucap
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gp2fasta
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gplates
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academic/gplates: Added (plate tectonics program).
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2024-02-10 16:17:21 +07:00 |
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gpredict
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academic/gpredict: Added aarch64 flags
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2024-01-19 09:51:03 +07:00 |
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grace
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gresistor
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academic/gresistor: Align with template.
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2023-05-20 11:17:29 +07:00 |
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gretl
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gri
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academic/gri: Updated for version 2.12.7
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2024-05-11 06:51:48 +07:00 |
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Gridcoin-Research
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academic/Gridcoin-Research: Updated for version 5.4.8.0
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2024-05-04 21:45:29 +07:00 |
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gromacs
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academic/gromacs: Minor template nitpick.
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2023-02-18 10:07:13 +07:00 |
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grpn
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gspiceui
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academic/gspiceui: Updated for version 1.2.87.
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2023-06-03 10:38:23 +07:00 |
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gtkwave
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gtypist
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gwyddion
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academic/gwyddion: Updated for version 2.67.
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2024-11-12 23:22:53 +07:00 |
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h5utils
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academic/h5utils: Updated for version 1.13.2.
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2023-02-18 10:06:44 +07:00 |
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harminv
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academic/harminv: Updated for version 1.4.2.
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2023-02-18 10:06:44 +07:00 |
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hdfview
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academic/hdfview: Added (visualization and exploration software).
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2023-11-19 21:08:04 +07:00 |
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HMMER
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academic/HMMER: Updated for version 3.4.
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2023-09-13 21:53:45 +07:00 |
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hyphy
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academic/hyphy: Updated for version 2.5.50.
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2023-05-13 19:27:12 +07:00 |
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IGV
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academic/IGV: Updated for version 2.16.2.
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2023-09-17 00:10:15 +07:00 |
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io_lib
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academic/io_lib: Updated for version 1.15.0.
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2023-05-13 19:27:04 +07:00 |
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iqtree
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academic/iqtree: Updated for version 2.2.2.7.
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2023-09-13 21:53:07 +07:00 |
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irsim
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Isabelle
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academic/Isabelle: Added (proof assistant).
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2023-07-18 08:47:19 +07:00 |
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isoelectric-point
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iTest
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itex2mml
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ITK
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academic/ITK: Fix build.
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2024-03-12 23:46:52 +07:00 |
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jalview
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academic/jalview: Updated for version 2.11.2.7.
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2023-09-17 00:10:16 +07:00 |
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jellyfish_k-mer
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jpicedt
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kalign
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academic/kalign: Added (multipelsquence alignment program).
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2023-09-11 14:39:00 +07:00 |
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karma
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kissat
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academic/kissat: Added (SAT solver).
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2024-04-14 12:05:18 +07:00 |
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klavaro
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klu
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academic/klu: Fix redundant deps.
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2023-12-22 07:59:39 +07:00 |
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knime
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kraken
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Kst
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academic/Kst: Updated for version 20221025_5fdd819.
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2023-02-22 12:09:51 +07:00 |
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ktikz
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kurso
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labplot2
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academic/labplot2: Updated for version 2.11.1.
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2024-08-20 10:46:00 +07:00 |
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ladr
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laghos
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lalnview
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lammps
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academic/lammps: Remove doinst.sh.
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2024-04-17 14:55:21 +07:00 |
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lapack95
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lapacke
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academic/lapacke: Updated for version 3.12.0
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2024-01-13 07:14:25 +07:00 |
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latex2html
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ldl
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academic/ldl: Align with template.
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2023-05-20 11:17:30 +07:00 |
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libghemical
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locarna
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louvain-community
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academic/louvain-community: Fix github URL.
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2024-04-05 15:18:04 +07:00 |
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lpsolve
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mafft
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academic/mafft: Updated for version 7.520.
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2023-05-13 19:27:12 +07:00 |
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magic
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academic/magic: Updated for version 8.3.474.
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2024-05-11 06:51:54 +07:00 |
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mathics
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mathjax2
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academic/mathjax2: Update maintainer's email
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2023-06-04 23:13:23 +07:00 |
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mathomatic
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matio
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academic/matio: Updated for version 1.5.23.
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2023-02-11 09:30:46 +07:00 |
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maxima
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academic/maxima: Updated for version 5.47.0.
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2023-07-02 21:01:11 +07:00 |
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meep
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academic/meep: Fix redundant deps.
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2023-12-22 07:59:39 +07:00 |
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megax
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academic/megax: Fix and mv ARCH sect.
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2023-05-20 11:17:56 +07:00 |
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meme-db-gomo
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meme-db-motif
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meme-db-tgene
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meme-suite
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academic/meme-suite: Updated for version 5.5.4.
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2023-09-13 21:51:25 +07:00 |
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mendeleydesktop
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academic/mendeleydesktop: Fix ARCH.
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2023-06-03 10:38:30 +07:00 |
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metalwalls
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MetaPhlAn2
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academic/MetaPhlAn2: Fix github URL.
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2024-04-05 15:18:04 +07:00 |
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metis
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academic/metis: Align with template.
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2023-05-20 11:17:30 +07:00 |
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mfem
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minorminer
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mkDSSP
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molden
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academic/molden: Added (Molecular Density Viewer).
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2024-06-04 19:59:35 +07:00 |
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molequeue
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mpb
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mrbayes
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mumsa
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muscle
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muscle5
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ncbi-blast
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academic/ncbi-blast: Fix and mv ARCH sect.
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2023-05-20 11:17:56 +07:00 |
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ncbi-blast+
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academic/ncbi-blast+: Updated for version 2.14.1.
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2023-09-13 21:52:06 +07:00 |
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ncbi-edirect
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academic/ncbi-edirect: Updated for version 20.5.20231007.
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2023-10-14 10:32:26 +07:00 |
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ncbi-rmblastn
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nco
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academic/nco: Updated for version 5.2.9.
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2024-10-26 08:14:41 +07:00 |
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ncview
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ngspice
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academic/ngspice: Updated for version 43.
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2024-07-17 22:39:07 +07:00 |
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novocraft
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NWChem
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octave
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academic/octave: Updated for version 9.2.0
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2024-07-13 07:47:27 +07:00 |
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openboard
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academic/openboard: Switch to cmake
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2024-09-16 00:55:27 +07:00 |
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OpenFOAM
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academic/OpenFOAM: Updated for version 11.
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2023-12-22 08:47:16 +07:00 |
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OpenMM
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OpenVSP
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academic/OpenVSP: Fix build.
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2024-06-25 06:10:28 +07:00 |
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pal2nal
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paml
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academic/paml: Updated for version 4.10.6.
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2023-04-22 11:38:27 +07:00 |
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pamlX
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academic/pamlX: Fix paml docs dir.
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2023-04-22 11:38:28 +07:00 |
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papi
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pari
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parmetis
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patsy
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pcalc
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pcb
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penaltymodel
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perlprimer
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PhyML
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pianobooster
|
|
|
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plasmidomics
|
|
|
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plus42
|
academic/plus42: Updated for version 1.1.13
|
2024-11-02 08:22:28 +07:00 |
|
pomoxis
|
academic/pomoxis: Added (bioinformatics tools for nanopore research)
|
2023-03-18 09:50:22 +07:00 |
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prank-msa
|
|
|
|
primer3
|
academic/primer3: Updated for version 2.6.1.
|
2023-06-20 19:52:38 +07:00 |
|
pspp
|
academic/pspp: Updated for version 2.0.1.
|
2024-05-04 21:45:16 +07:00 |
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pulseview
|
|
|
|
PyAMG
|
academic/PyAMG: Fix redundant deps.
|
2023-12-22 07:59:38 +07:00 |
|
pyCRAC
|
academic/pyCRAC: Mark for x86_64.
|
2024-07-28 07:55:13 +07:00 |
|
pysam
|
academic/pysam: Upgrade to version 0.22.1
|
2024-07-28 07:34:07 +07:00 |
|
python2-kiwisolver
|
academic/python2-kiwisolver: Align with template.
|
2023-05-20 11:17:41 +07:00 |
|
python2-scipy
|
academic/python2-scipy: Align with template.
|
2023-05-20 11:17:41 +07:00 |
|
python3-ase
|
academic/python3-ase: Fix redundant deps.
|
2023-12-22 07:59:39 +07:00 |
|
python3-scipy
|
academic/python3-scipy: Fix PYTHONPATH.
|
2024-04-05 15:18:20 +07:00 |
|
qalculate-gtk
|
academic/qalculate-gtk: Updated for version 3.22.0; new maintainer.
|
2024-09-04 08:48:06 +07:00 |
|
qcl
|
|
|
|
qhull
|
academic/qhull: Remove outdated octave symlinks.
|
2024-01-16 14:36:14 +07:00 |
|
qrupdate
|
academic/qrupdate: Fix redundant deps.
|
2023-12-22 07:59:40 +07:00 |
|
qucs
|
academic/qucs: Updated for version 0.0.20.
|
2024-06-29 21:19:10 +07:00 |
|
qucs-s
|
academic/qucs-s: Updated for version 24.4.1.
|
2024-11-16 09:36:04 +07:00 |
|
qucsator
|
academic/qucsator: Added (Circuit Simulator).
|
2024-06-29 21:20:04 +07:00 |
|
R
|
academic/R: update 4.4.2
|
2024-11-09 06:58:15 +07:00 |
|
ramulator
|
|
|
|
RAxML
|
|
|
|
rbio
|
academic/rbio: Align with template.
|
2023-05-20 11:17:27 +07:00 |
|
reduce-algebra
|
academic/reduce-algebra: Orphaned.
|
2024-09-07 08:51:14 +07:00 |
|
RepeatMasker
|
academic/RepeatMasker: Updated for version 4.1.5.
|
2023-09-17 00:10:17 +07:00 |
|
root
|
academic/root: Updated for version 6.32.04 (+fix 32 bit)
|
2024-08-23 21:37:39 +07:00 |
|
rpy2
|
academic/rpy2: Upgrade to version 3.5.16
|
2024-04-15 10:00:33 +07:00 |
|
sage
|
academic/sage: Updated for 10.1
|
2023-09-29 10:35:53 +07:00 |
|
sage-bin
|
|
|
|
samtools
|
academic/samtools: Updated to version 1.21
|
2024-10-12 09:40:52 +07:00 |
|
samtools-legacy
|
|
|
|
scidavis
|
academic/scidavis: Fix building on -current.
|
2024-04-13 22:04:05 +07:00 |
|
scilab
|
|
|
|
scmutils
|
academic/scmutils: Added (scm utils).
|
2023-11-29 18:35:27 +07:00 |
|
seaview
|
academic/seaview: treerecs added to REQUIRES.
|
2023-04-22 11:38:31 +07:00 |
|
seqkit
|
academic/seqkit: Updated for version 2.5.1.
|
2023-09-23 08:42:56 +07:00 |
|
SeqMonk
|
|
|
|
sequence-analysis
|
|
|
|
Shark
|
|
|
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sigrok-cli
|
|
|
|
sim
|
academic/sim: Added (local similarity program).
|
2023-09-11 22:18:38 +07:00 |
|
SimEng
|
|
|
|
siril
|
|
|
|
smath-studio
|
academic/smath-studio: Updated for version 1.1.8763
|
2024-05-04 21:45:29 +07:00 |
|
snpEff
|
|
|
|
solfege
|
academic/solfege: New maintainer.
|
2024-08-17 18:14:15 +07:00 |
|
spades
|
academic/spades: Updated for version 3.15.5.
|
2023-04-21 09:30:46 +07:00 |
|
speedcrunch
|
|
|
|
spiceopus
|
|
|
|
spidey
|
academic/spidey: Fix and mv ARCH sect.
|
2023-05-20 11:17:56 +07:00 |
|
spqr
|
academic/spqr: Fix redundant deps.
|
2023-12-22 07:59:40 +07:00 |
|
squizz
|
|
|
|
staden
|
academic/staden: A few enhancements.
|
2023-05-13 19:27:12 +07:00 |
|
STAR
|
academic/STAR:Upgrade to version 2.7.11b
|
2024-01-30 07:48:15 +07:00 |
|
stellarium
|
academic/stellarium: Updated for version 23.4.
|
2024-01-09 08:45:39 +07:00 |
|
stellarsolver
|
academic/stellarsolver: Mark for x86_64 only.
|
2024-05-04 21:45:22 +07:00 |
|
stringtie
|
|
|
|
SU2
|
academic/SU2: Add network warning to README.
|
2023-09-23 11:33:27 +07:00 |
|
suitesparse
|
academic/suitesparse: Ensure correct linking
|
2023-11-25 22:12:39 +07:00 |
|
suitesparseconfig
|
academic/suitesparseconfig: Align with template.
|
2023-05-20 11:17:30 +07:00 |
|
sundials
|
|
|
|
sword
|
|
|
|
sword-data-kjv
|
academic/sword-data-kjv: Replaced backtick cmdsub.
|
2024-07-20 08:09:03 +07:00 |
|
t_coffee
|
|
|
|
tabix-legacy
|
|
|
|
tiemu
|
academic/tiemu: New maintainer.
|
2023-02-25 09:18:10 +07:00 |
|
tilem
|
|
|
|
tilem2
|
|
|
|
tkgate
|
|
|
|
topdraw
|
academic/topdraw: update source.
|
2023-09-11 22:18:50 +07:00 |
|
tophat
|
|
|
|
treebest-ensembl
|
|
|
|
TreeGraph
|
|
|
|
treerecs
|
academic/treerecs: Added (Treerecs: a tree reconciliation tool)
|
2023-04-22 11:38:30 +07:00 |
|
treeviewx
|
academic/treeviewx: update source.
|
2023-09-11 22:18:50 +07:00 |
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trfind
|
|
|
|
trimmomatic
|
|
|
|
tuxmath
|
|
|
|
tuxtype2
|
|
|
|
ucsc-blat
|
academic/ucsc-blat: Fix and mv ARCH sect, http->https.
|
2023-05-20 11:17:56 +07:00 |
|
ugene
|
academic/ugene: Updated for version 48.1.
|
2023-09-17 00:10:15 +07:00 |
|
umfpack
|
academic/umfpack: Fix redundant deps.
|
2023-12-22 07:59:40 +07:00 |
|
units
|
academic/units: Updated for version 2.23.
|
2024-02-24 15:34:49 +07:00 |
|
vCAPS_coevolution
|
|
|
|
vcftools
|
|
|
|
velocyto
|
academic/velocyto: Use correct github URL.
|
2023-03-25 10:02:01 +07:00 |
|
verilator
|
|
|
|
verilog
|
|
|
|
veusz
|
|
|
|
ViennaRNA
|
academic/ViennaRNA: Updated to version 2.7.0
|
2024-10-12 09:40:53 +07:00 |
|
voro++
|
|
|
|
wcalc
|
academic/wcalc: Use correct sourceforge link.
|
2024-01-27 15:37:51 +07:00 |
|
wehi-cellsymphony
|
|
|
|
wehi-deid
|
|
|
|
wehi-hackit
|
|
|
|
wehi-weasel
|
academic/wehi-weasel: Updated for version 3.8.0.18.
|
2023-09-17 00:10:15 +07:00 |
|
WEVOTE
|
|
|
|
wise
|
academic/wise: Update script.
|
2023-09-23 08:42:56 +07:00 |
|
wmcalc
|
|
|
|
WolframEngine
|
academic/WolframEngine: Updated for version 14.0.0.
|
2024-04-13 22:03:51 +07:00 |
|
WordNet
|
academic/WordNet: Updated for version 3.1.
|
2024-10-05 08:36:10 +07:00 |
|
wxMaxima
|
academic/wxMaxima: Use DESTDIR properly.
|
2023-07-08 16:41:57 +07:00 |
|
x48
|
academic/x48: Fixed MD5SUM.
|
2024-04-14 08:34:30 +07:00 |
|
xcircuit
|
academic/xcircuit: Updated for version 3.10.30. New maintainer.
|
2023-03-25 10:01:45 +07:00 |
|
xephem
|
academic/xephem: Updated for version 4.1.0.
|
2023-08-12 09:42:58 +09:00 |
|
xflr5
|
academic/xflr5: gzip patches.
|
2023-12-29 18:49:32 +07:00 |
|
xfoil
|
|
|
|
xiphos
|
academic/xiphos: fix script typo
|
2024-07-30 01:12:41 +07:00 |
|
xoscope
|
academic/xoscope: Align with template.
|
2023-05-20 11:17:31 +07:00 |
|
xschem
|
academic/xschem: Update script.
|
2023-12-06 10:09:31 +07:00 |
|
xsimd
|
academic/xsimd: Updated for version 13.0.0.
|
2024-05-25 11:47:40 +07:00 |
|
yices2
|
|
|
|
z3
|
|
|
|
ZeGrapher
|
|
|
|
zotero
|
academic/zotero: updated for version 7.0.9
|
2024-11-02 07:14:24 +07:00 |
|
zotero-gtk2
|
academic/zotero-gtk2: Added (Collect and share research sources)
|
2023-05-06 08:28:23 +07:00 |
