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18 lines
1,013 B
Text
DendroPy Phylogenetic Computing Library
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DendroPy is a Python library for phylogenetic computing. It provides
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classes and functions for the simulation, processing, and manipulation
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of phylogenetic trees and character matrices, and supports the reading
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and writing of phylogenetic data in a range of formats, such as NEXUS,
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NEWICK, NeXML, Phylip, FASTA, etc. Application scripts for performing
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some useful phylogenetic operations, such as data conversion and tree
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posterior distribution summarization, are also distributed and installed
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as part of the libary. DendroPy can thus function as a stand-alone
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library for phylogenetics, a component of more complex multi-library
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phyloinformatic pipelines, or as a scripting "glue" that assembles and
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drives such pipelines.
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If you use this library either in whole or in part in your analysis,
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or use any code derived from it, please cite it as:
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Sukumaran, J. and Mark T. Holder. 2010. DendroPy: A Python library for
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phylogenetic computing. Bioinformatics 26: 1569-1571.
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