mirror of
https://github.com/Ponce/slackbuilds
synced 2024-11-24 10:02:29 +01:00
19 lines
1,013 B
Text
19 lines
1,013 B
Text
|
DendroPy Phylogenetic Computing Library
|
||
|
|
|
||
|
|
DendroPy is a Python library for phylogenetic computing. It provides
|
||
|
|
classes and functions for the simulation, processing, and manipulation
|
||
|
|
of phylogenetic trees and character matrices, and supports the reading
|
||
|
|
and writing of phylogenetic data in a range of formats, such as NEXUS,
|
||
|
|
NEWICK, NeXML, Phylip, FASTA, etc. Application scripts for performing
|
||
|
|
some useful phylogenetic operations, such as data conversion and tree
|
||
|
|
posterior distribution summarization, are also distributed and installed
|
||
|
|
as part of the libary. DendroPy can thus function as a stand-alone
|
||
|
|
library for phylogenetics, a component of more complex multi-library
|
||
|
|
phyloinformatic pipelines, or as a scripting "glue" that assembles and
|
||
|
|
drives such pipelines.
|
||
|
|
|
||
|
|
If you use this library either in whole or in part in your analysis,
|
||
|
|
or use any code derived from it, please cite it as:
|
||
|
|
Sukumaran, J. and Mark T. Holder. 2010. DendroPy: A Python library for
|
||
|
|
phylogenetic computing. Bioinformatics 26: 1569-1571.
|