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1404 commits

Author SHA1 Message Date
Panagiotis Nikolaou
9d2959be6c
academic/gretl: Fixed md5sums of pdf files 
Signed-off-by: Robby Workman <rworkman@slackbuilds.org>
 2016-07-30 08:28:43 +07:00
Glenn Becker
6d44becc34
academic/maxima: Updated for version 5.38.1. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2016-07-25 04:36:56 +07:00
Glenn Becker
f051521704
academic/calc: Updated for version 2.12.5.4. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2016-07-25 04:36:25 +07:00
Matteo Bernardini
783ba9e72b academic/coq: Updated for version 8.5pl1. 
Signed-off-by: Matteo Bernardini <ponce@slackbuilds.org>
 2016-07-20 14:20:08 -05:00
Petar Petrov
6c723ef387
academic/jalview: Remove p7zip dep. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2016-07-17 07:48:52 +07:00
John Sweeney
5dc50ed718
academic/gcompris: Update DOWNLOAD url. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2016-07-07 12:55:28 +07:00
Willy Sudiarto Raharjo
f7e752b887
academic/GeoGebra: Updated for version 5.0.253.0. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2016-06-27 07:54:25 +07:00
Willy Sudiarto Raharjo
0504503fe4
academic/R: Updated for version 3.3.1. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2016-06-25 07:29:02 +07:00
Willy Sudiarto Raharjo
f183cad2ff
academic/ugene: Update DEP and patched for GCC. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2016-06-24 16:13:02 +07:00
David Spencer
7090c26b6d
gis/spatialite_gui: Moved from academic/ category. 
Signed-off-by: David Spencer <baildon.research@googlemail.com>
 2016-06-12 00:48:47 +07:00
David Spencer
12d285a5d7
gis/spatialite-tools: Moved from academic/ category. 
Signed-off-by: David Spencer <baildon.research@googlemail.com>
 2016-06-10 08:02:42 +07:00
David Spencer
3e357cdf78
gis/opengrads: Moved from academic/ category. 
Signed-off-by: David Spencer <baildon.research@googlemail.com>
 2016-06-10 08:02:42 +07:00
David Spencer
78b22de91b
gis/TauDEM: Moved from academic/ category. 
Signed-off-by: David Spencer <baildon.research@googlemail.com>
 2016-06-10 08:02:42 +07:00
David Spencer
b2aaace655
academic/Xyce: Updated for version 6.5. 
Signed-off-by: David Spencer <baildon.research@googlemail.com>
 2016-06-09 07:44:09 +07:00
David Spencer
b28e574c74 academic/vcftools: Fix DOWNLOAD. 
Signed-off-by: David Spencer <baildon.research@googlemail.com>
 2016-06-08 11:36:10 +01:00
David Spencer
a4f1aee003
academic/Xyce: Updated for version 6.4. 
Big thanks to Thomas Morper!!

Signed-off-by: David Spencer <baildon.research@googlemail.com>
 2016-06-08 08:33:37 +07:00
Petar Petrov
32de1350ff
academic/zotero: Updated for version 4.0.29.5 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2016-06-05 22:28:06 +07:00
Petar Petrov
28f234cf45
academic/vcftools: Updated for version 0.1.14_12_gcdb80b8 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2016-06-05 22:28:05 +07:00
Petar Petrov
a2d9c58b50
academic/ugene: Updated for version 1.22.0 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2016-06-05 22:28:04 +07:00
Petar Petrov
b6456152b1
academic/tophat: Updated for version 2.1.1 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2016-06-05 22:28:03 +07:00
Petar Petrov
8f0d485ccc
academic/spades: Updated for version 3.7.1 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2016-06-05 22:28:03 +07:00
Petar Petrov
1c51e361d5
academic/seaview: Updated for version 4.6 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2016-06-05 22:28:02 +07:00
Petar Petrov
9f7e82c20d
academic/primer3: Updated for version 2.3.7 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2016-06-05 22:28:01 +07:00
Petar Petrov
aa95130ed5
academic/pamlX: Updated against paml 4.9a 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2016-06-05 22:27:59 +07:00
Petar Petrov
e89ebdbb0c
academic/paml: Updated for version 4.9a 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2016-06-05 22:27:59 +07:00
Petar Petrov
a620253841
academic/mafft: Updated for version 7.273 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2016-06-05 22:27:57 +07:00
Petar Petrov
670dfe9ea3
academic/ImageJ: Updated for version 1.50 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2016-06-05 22:27:56 +07:00
Petar Petrov
7f0b78e892
academic/ij-plugins-LOCI: Updated for version 5.1.9 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2016-06-05 22:27:55 +07:00
Petar Petrov
cd371a148f
academic/gchemutils: Updated for version 0.14.12 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2016-06-05 22:27:54 +07:00
Petar Petrov
36c42b77b2
academic/fastqc: Updated for version 0.11.5 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2016-06-05 22:27:54 +07:00
Petar Petrov
5cf72323c4
academic/cutadapt: Updated for version 1.9.1 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2016-06-05 22:27:53 +07:00
Petar Petrov
8e7ce7eb4e
academic/cistrome-mdseqpos: Added (Cistrome mdseqpos) 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2016-06-05 22:27:47 +07:00
Petar Petrov
55129a3e91
academic/cistrome-extra: Added (Cistrome extra apps) 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2016-06-05 22:21:58 +07:00
Petar Petrov
2e35245d33
academic/cistrome-conductGO: Added (find the highest expressed TFs) 2016-06-05 22:21:58 +07:00
Petar Petrov
aad6293dd9
academic/bwa: Updated for version 0.7.13 2016-06-05 22:21:58 +07:00
Petar Petrov
c600a63327
academic/bedGraphToBigWig: Added (Convert bedGraph to bigWig file) 2016-06-05 22:21:58 +07:00
David Spencer
ac819d8485
academic/paml: Fix DOWNLOAD. 
Signed-off-by: David Spencer <baildon.research@googlemail.com>
 2016-06-04 01:20:45 +07:00
David Spencer
8c09318591
academic/squizz: Update MD5SUM. 
Signed-off-by: David Spencer <baildon.research@googlemail.com>
 2016-06-04 01:20:45 +07:00
David Spencer
d528274538
academic/sword-data-kjv: Update MD5SUM. 
Signed-off-by: David Spencer <baildon.research@googlemail.com>
 2016-06-04 01:20:45 +07:00
David Spencer
994c4d19c1
academic/xephem: Updated for version 3.7.7. 
Signed-off-by: David Spencer <baildon.research@googlemail.com>
 2016-06-04 01:20:45 +07:00
David Spencer
debcf063e9
academic/ncbi-blast: Fix DOWNLOAD. 
Signed-off-by: David Spencer <baildon.research@googlemail.com>
 2016-06-04 01:20:45 +07:00
David Spencer
e977ee1431
academic/ktikz: Fix HOMEPAGE and DOWNLOAD. 
Signed-off-by: David Spencer <baildon.research@googlemail.com>
 2016-06-04 01:20:45 +07:00
David Spencer
80c63f4ef8
academic/fet: Fix DOWNLOAD. 
Signed-off-by: David Spencer <baildon.research@googlemail.com>
 2016-06-04 01:20:45 +07:00
David Spencer
8d7bf0297e
academic/armadillo: Updated for version 7.100.3. 
Signed-off-by: David Spencer <baildon.research@googlemail.com>
 2016-06-04 01:20:45 +07:00
David Spencer
c141aa93fe
academic/antiprism: Fix DOWNLOAD. 
Signed-off-by: David Spencer <baildon.research@googlemail.com>
 2016-06-04 01:20:45 +07:00
Matteo Bernardini
d748569cda academic/spades: Fix invalid chars in desc. 
Signed-off-by: Matteo Bernardini <ponce@slackbuilds.org>
 2016-05-27 07:23:29 +07:00
Matteo Bernardini
e9177f9667 academic/mafft: Fix invalid chars in desc. 
Signed-off-by: Matteo Bernardini <ponce@slackbuilds.org>
 2016-05-27 07:23:29 +07:00
Willy Sudiarto Raharjo
2d2e5c3ded academic/R: Updated for version 3.3.0. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2016-05-20 20:03:53 +07:00
Willy Sudiarto Raharjo
a8409be8c2 academic/sage: Updated for version 7.2. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2016-05-20 20:03:53 +07:00
David Spencer
f7308a3f13 academic/root: Updated for version 5.34.36. 
Fixes build failure with gcc-5.3 on i586.
Enabled gsl and fftw by default, since they are both in Slackware.
Moved from /usr/ROOT to /opt/ROOT.
Script cleanups.
 2016-04-19 22:47:49 +07:00
David Spencer
d94fd939a2 academic/omlibraries: Removed. 
Depends on openmodelica, which has been removed.
 2016-04-19 22:47:46 +07:00
David Spencer
638f131d47 academic/lpsolve: Patched to fix build failure. 
Signed-off-by: David Spencer <idlemoor@slackbuilds.org>
 2016-04-12 17:34:23 +07:00
Willy Sudiarto Raharjo
35008a2fe1 academic/sage: Updated for version 7.1. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2016-04-05 23:42:00 -05:00
Willy Sudiarto Raharjo
3c81227b9b academic/stellarium: Updated for version 0.14.3. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2016-03-24 17:07:26 +07:00
Robby Workman
204b2d6242 academic/loggerpro: Added (data-collection and analysis software) 
Signed-off-by: Robby Workman <rworkman@slackbuilds.org>
 2016-03-20 07:37:55 +07:00
Matteo Bernardini
6b365938ac academic/scipy: Fix dowload link. 
Signed-off-by: Matteo Bernardini <ponce@slackbuilds.org>
 2016-03-12 06:42:40 +07:00
Petar Petrov
c1e6058dcc academic/ugene: Updated for version 1.21.0. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2016-03-06 18:50:22 +07:00
Willy Sudiarto Raharjo
2a24e2765d academic/openmodelica: Removed (no longer build). 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2016-03-06 09:30:22 +07:00
Jheengut Pritvi
7bab9815d4 academic/spatialite_gui: Update DOWNLOAD url. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2016-02-27 13:22:32 +07:00
David Spencer
6f1acb7518 academic/tophat: Support alternate tarball name. 
Signed-off-by: David Spencer <idlemoor@slackbuilds.org>
 2016-02-23 00:57:48 +07:00
Willy Sudiarto Raharjo
3a7ea11de4 multiple: Update email address. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2016-02-22 22:11:47 +07:00
Willy Sudiarto Raharjo
55988a5e80 academic/tophat: Fix Build. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2016-02-06 03:36:48 +07:00
Petar Petrov
1c78256490 academic/vcftools: version bump 2016-02-05 07:02:20 +07:00
Petar Petrov
380773085c academic/spades: version bump 2016-02-05 07:02:20 +07:00
Petar Petrov
6fffb27d21 academic/snpEff: version bump 2016-02-05 07:02:20 +07:00
Petar Petrov
b5925d8c21 academic/seaview: minor version bump 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2016-02-05 07:02:20 +07:00
Petar Petrov
8af4cfe858 academic/QtiPlot: correct a few paths 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2016-02-05 07:02:20 +07:00
Petar Petrov
8b9883543c academic/mrbayes: version bump 2016-02-05 07:02:20 +07:00
Petar Petrov
09248e745f academic/mafft: version bump 2016-02-05 07:02:20 +07:00
Petar Petrov
2019564010 academic/ij-plugins-LOCI: version bump 2016-02-05 07:02:20 +07:00
Petar Petrov
932b7d0962 academic/genometools: version bump 2016-02-05 07:02:20 +07:00
Petar Petrov
d441e80884 academic/fastqc: version bump 2016-02-05 07:02:20 +07:00
Willy Sudiarto Raharjo
ff0fe8c149 academic/sage: Updated for version 7.0. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2016-01-26 21:50:52 +07:00
Benjamin Trigona-Harany
0e834e7268 academic/cld2: Updated for version 20150820. 
Signed-off-by: Benjamin Trigona-Harany <bosth@alumni.sfu.ca>
 2016-01-26 18:59:05 +07:00
Willy Sudiarto Raharjo
03815961c1 academic/stellarium: Updated for version 0.14.2. 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2016-01-19 21:56:08 +07:00
David Spencer
29faff7fb3 academic/seaview: Build with extra/fltk. 
Signed-off-by: David Spencer <idlemoor@slackbuilds.org>
 2016-01-16 23:36:53 -06:00
Petar Petrov
ec514e32c4 Multiple: update email, year and slack-desc 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2016-01-17 09:40:16 +07:00
Robby Workman
c6a2f7b06d Multiple: Fix .info and README (gtkmm refs) 
Signed-off-by: Robby Workman <rworkman@slackbuilds.org>
 2016-01-17 09:40:16 +07:00
Robby Workman
c2e9c35cda Multiple: Fix .info and README (Cython refs) 
Signed-off-by: Robby Workman <rworkman@slackbuilds.org>
 2016-01-17 09:40:16 +07:00
David Spencer
a723699906 academic/coq: Updated for version 8.4pl6. 
Fixes build failure with make-4.1.

Signed-off-by: David Spencer <baildon.research@googlemail.com>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2016-01-17 09:40:16 +07:00
David Spencer
948f0ac5b9 academic/celestia: Patched for libpng16. 
Fixes build failure on -current.

Signed-off-by: David Spencer <baildon.research@googlemail.com>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2016-01-17 09:40:16 +07:00
David Spencer
fc050f8db5 academic/arka: Fix building with gcc-5.2.0. 
Signed-off-by: David Spencer <baildon.research@googlemail.com>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2016-01-17 09:40:16 +07:00
David Spencer
27a8de224c academic/Kst: Patched for gsl-2.1. 
Signed-off-by: David Spencer <baildon.research@googlemail.com>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2016-01-17 09:40:16 +07:00
David Spencer
25ccacc72f academic/EMBASSY: Fix build with gcc5. 
Signed-off-by: David Spencer <baildon.research@googlemail.com>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2016-01-17 09:40:16 +07:00
David Spencer
91a40ef1e4 academic/flashqard: Patched to build on -current. 
Fails to build with qt-4.8.7.
Template cleanups.

Signed-off-by: David Spencer <baildon.research@googlemail.com>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2016-01-17 09:40:16 +07:00
David Spencer
4cbe56e524 academic/gelemental: Force std=c++11 in the CXXFLAGS. 
Signed-off-by: David Spencer <baildon.research@googlemail.com>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2016-01-17 09:40:16 +07:00
David Spencer
f72377834b academic/genius: Force std=gnu89 in CFLAGS/CXXFLAGS. 
Signed-off-by: David Spencer <baildon.research@googlemail.com>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2016-01-17 09:40:16 +07:00
David Spencer
ce056c6ef1 academic/pspp: Updated for version 0.8.5. 
Fixes build failure on -current.
-ltermcap fixes bogus <wchar.h> error in configure.

Signed-off-by: David Spencer <baildon.research@googlemail.com>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2016-01-17 09:40:16 +07:00
David Spencer
edbfa85153 academic/gretl: Use -j1 in SlackBuild. 
Signed-off-by: David Spencer <baildon.research@googlemail.com>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2016-01-17 09:40:16 +07:00
David Spencer
83338749ef academic/labplot2: Fixed build with gcc-5.2.0. 
Use SBo standard cmake template to add -fpermissive more easily.

Signed-off-by: David Spencer <baildon.research@googlemail.com>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2016-01-17 09:40:16 +07:00
David Spencer
1b44b838f6 academic/grpn: Fixed build with gcc-5.2.0. 
Signed-off-by: David Spencer <baildon.research@googlemail.com>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2016-01-17 09:40:16 +07:00
David Spencer
32be7da4a5 academic/ktikz: Fix CMakeLists.txt. 
Signed-off-by: David Spencer <baildon.research@googlemail.com>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2016-01-17 09:40:16 +07:00
David Spencer
ecaab058cc academic/itex2mml: Updated for version 1.5.1. 
Fixed build failure with bison-3.
Removed bashisms and hardcoded Ruby version.
(The itexToMML.tar.gz version was already 1.5.1...)

Signed-off-by: David Spencer <baildon.research@googlemail.com>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 2016-01-17 09:40:16 +07:00
David Spencer
b8f6fbd9c6 academic/root: Patched for gsl-2.1. 
Signed-off-by: David Spencer <baildon.research@googlemail.com>
 2016-01-17 09:40:16 +07:00
David Spencer
e21d48b8bb academic/root: Updated for version 5.34.32. 
Fixes build failure on -current.

Signed-off-by: David Spencer <baildon.research@googlemail.com>
 2016-01-17 09:40:16 +07:00
David Spencer
b777fd4907 academic/avogadro: Fixed underlinking with gcc-5.3.0. 
Signed-off-by: David Spencer <baildon.research@googlemail.com>
 2016-01-17 09:40:16 +07:00
David Spencer
1f4d309466 academic/avogadro: Patched to link X properly. 
Underlinking error (cmake-3/gcc-5).

Signed-off-by: David Spencer <baildon.research@googlemail.com>
 2016-01-17 09:40:16 +07:00
David Spencer
3c3c71911d academic/avogadro: Patched for building with eigen3. 
Thanks to slack_jack and ponce.

Signed-off-by: David Spencer <baildon.research@googlemail.com>
 2016-01-17 09:40:16 +07:00
David Spencer
167b044285 academic/QtiPlot: Patched for gsl-2.1. 
Signed-off-by: David Spencer <baildon.research@googlemail.com>
 2016-01-17 09:40:16 +07:00
David Spencer
9434f258ee academic/QtiPlot: Patched for building with sip-4.16. 
Also fixed library plugin location.

Signed-off-by: David Spencer <baildon.research@googlemail.com>
 2016-01-17 09:40:16 +07:00