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academic/pamlX: Updated against paml 4.9a

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Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
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Petar Petrov 2016-06-05 15:48:31 +03:00 committed by Willy Sudiarto Raharjo
parent e89ebdbb0c
commit aa95130ed5
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GPG key ID: 887B8374D7333381
2 changed files with 12 additions and 4 deletions
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10
academic/pamlX/README
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@ -1 +1,9 @@
The graphical user interface for paml.
PAML: Phylogenetic Analysis by Maximum Likelihood
PAML is a package of programs for phylogenetic analyses of DNA or
protein sequences using maximum likelihood. PAML is not good for tree
making. It may be used to estimate parameters and test hypotheses to
study the evolutionary process, when you have reconstructed trees
using other programs such as PAUP*, PHYLIP, MOLPHY, PhyML, RaxML, etc.
This is pamlX: the graphical user interface for PAML.

6
academic/pamlX/pamlX.SlackBuild
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@ -24,7 +24,7 @@
PRGNAM=pamlX
VERSION=${VERSION:-1.3.1}
BUILD=${BUILD:-1}
BUILD=${BUILD:-2}
TAG=${TAG:-_SBo}
if [ -z "$ARCH" ]; then
@ -74,8 +74,8 @@ find -L . \
# manuals installed by paml.
sed -i 's|QApplication::applicationDirPath()|"/usr"|g' mainwindow.cpp
sed -i 's|+= "/pamlx.conf"|= "~/.pamlX/pamlx.conf"|g' mainwindow.cpp
sed -i 's|/doc/|/doc/paml-4.8a/|g' mainwindow.cpp
sed -i 's|/doc/|/doc/paml-4.8a/|g' pamlhistorydialog.cpp
sed -i 's|/doc/|/doc/paml-4.9a/|g' mainwindow.cpp
sed -i 's|/doc/|/doc/paml-4.9a/|g' pamlhistorydialog.cpp
# If you want the "Help" menu to use something else than Okular for
# viewing the PDF documentation, uncomment the appropriate line below