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academic/mfem: Added (library for finite element methods).
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
This commit is contained in:
William PC
Willy Sudiarto Raharjo
parent
b78ab7473d
commit
14f6472d34
4 changed files with 233 additions and 0 deletions
16
academic/mfem/README
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16
academic/mfem/README
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MFEM is a free, lightweight, scalable C++ library for finite element
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methods.
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Building options that can be set using the environment variable:
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- OMP=yes, use OpenMP.
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- MPI=yes, use MPI (requires a MPI implementation either mpich or
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openmpi and the hypre and metis package.
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- CUDA=yes, requires the CUDA toolkit.
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- TESTS=yes, to run the tests.
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Compiling the examples:
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# mkdir mfem-examples; cd mfem-examples
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# cp -av /usr/share/mfem-4.5/{data,examples} .
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# make -C examples
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# make
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188
academic/mfem/mfem.SlackBuild
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academic/mfem/mfem.SlackBuild
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#!/bin/bash
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# Slackware build script for mfem
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# Copyright 2022 William PC, Seattle (USA)
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# All rights reserved.
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#
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# Redistribution and use of this script, with or without modification, is
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# permitted provided that the following conditions are met:
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#
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# 1. Redistributions of this script must retain the above copyright
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# notice, this list of conditions and the following disclaimer.
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#
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# THIS SOFTWARE IS PROVIDED BY THE AUTHOR "AS IS" AND ANY EXPRESS OR IMPLIED
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# WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
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# MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO
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# EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
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# SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
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# PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
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# OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
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# WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
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# OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
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# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
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cd $(dirname $0) ; CWD=$(pwd)
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PRGNAM=mfem
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VERSION=${VERSION:-4.5}
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BUILD=${BUILD:-1}
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TAG=${TAG:-_SBo}
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PKGTYPE=${PKGTYPE:-tgz}
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if [ -z "$ARCH" ]; then
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case "$( uname -m )" in
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i?86) ARCH=i586 ;;
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arm*) ARCH=arm ;;
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*) ARCH=$( uname -m ) ;;
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esac
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fi
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if [ ! -z "${PRINT_PACKAGE_NAME}" ]; then
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echo "$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.$PKGTYPE"
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exit 0
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fi
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TMP=${TMP:-/tmp/SBo}
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PKG=$TMP/package-$PRGNAM
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OUTPUT=${OUTPUT:-/tmp}
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if [ "$ARCH" = "i586" ]; then
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SLKCFLAGS="-O2 -march=i586 -mtune=i686"
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LIBDIRSUFFIX=""
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elif [ "$ARCH" = "i686" ]; then
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SLKCFLAGS="-O2 -march=i686 -mtune=i686"
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LIBDIRSUFFIX=""
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elif [ "$ARCH" = "x86_64" ]; then
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SLKCFLAGS="-O2 -fPIC"
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LIBDIRSUFFIX="64"
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else
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SLKCFLAGS="-O2"
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LIBDIRSUFFIX=""
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fi
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set -e
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rm -rf $PKG
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mkdir -p $TMP $PKG $OUTPUT
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cd $TMP
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rm -rf $PRGNAM-$VERSION
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tar xvf $CWD/$PRGNAM-$VERSION.tar.gz
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cd $PRGNAM-$VERSION
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chown -R root:root .
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find -L . \
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\( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 \
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-o -perm 511 \) -exec chmod 755 {} \; -o \
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\( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \
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-o -perm 440 -o -perm 400 \) -exec chmod 644 {} \;
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if [ "${OMP:-no}" == "yes" ]; then
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OPT_BUILD="MFEM_USE_OPENMP=YES"
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fi
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# this can't be null even without using MPI it has to be set
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# to don't throw an error at make
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MFEM_MPIEXEC="MFEM_MPIEXEC=mpirun"
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if [ "${MPI:-no}" == "yes" ]; then
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OPT_BUILD="$OPT_BUILD MFEM_USE_MPI=YES"
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OPT_BUILD="$OPT_BUILD MFEM_USE_METIS_5=YES"
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# fix hypre location
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sed -i 's#^HYPRE_DIR = .*#HYPRE_DIR = /usr#' config/defaults.mk
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sed -i 's#$(HYPRE_DIR)/include#&/hypre#' config/defaults.mk
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sed -i 's#$(HYPRE_DIR)/lib#&'${LIBDIRSUFFIX}'#' config/defaults.mk
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# fix metis location
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sed -i 's#METIS_DIR = @MFEM_DIR@/../metis-5.0#METIS_DIR = /usr#' config/defaults.mk
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sed -i 's#$(METIS_DIR)/include#&/metis#' config/defaults.mk
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sed -i 's#-L$(METIS_DIR)/lib#&'${LIBDIRSUFFIX}'#' config/defaults.mk
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# fix for running check with MPI
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if pkg-config --exists mpich; then
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echo "Using mpich"
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MFEM_MPIEXEC="MFEM_MPIEXEC=\"mpirun -host localhost\""
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else
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echo "Using openmpi"
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export OMPI_ALLOW_RUN_AS_ROOT=1
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export OMPI_ALLOW_RUN_AS_ROOT_CONFIRM=1
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fi
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fi
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if [ "${CUDA:-no}" == "yes" ]; then
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OPT_BUILD="$OPT_BUILD MFEM_USE_CUDA=YES"
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fi
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# fix lib and share install location
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sed -i 's#$(PREFIX)/lib#&'${LIBDIRSUFFIX}'#' makefile
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sed -i 's#$(PREFIX)/share/mfem#&-'${VERSION}'#' makefile
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# "$MFEM_MPIEXEC" \
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CFLAGS="$SLKCFLAGS" \
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CXXFLAGS="$SLKCFLAGS" \
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make config \
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MFEM_STATIC=NO \
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MFEM_SHARED=YES \
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$OPT_BUILD \
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"$MFEM_MPIEXEC" \
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BUILD_DIR=build
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cd build
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make
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make check
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if [ "${TESTS:-no}" == "yes" ]; then
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make test
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fi
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make install \
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MFEM_PREFIX=/usr \
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MFEM_INC_DIR="@MFEM_PREFIX@/include" \
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MFEM_LIB_DIR="@MFEM_PREFIX@/lib${LIBDIRSUFFIX}" \
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MFEM_TEST_MK="@MFEM_PREFIX@/share/$PRGNAM-$VERSION/test.mk" \
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PREFIX=$PKG/usr
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cd ..
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# fix permissions
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find -L $PKG/usr/{include,share} \
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\( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \
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-o -perm 440 -o -perm 400 \) -exec chmod 644 {} \;
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# install data files, examples and miniapps
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mkdir -p $PKG/usr/share/$PRGNAM-$VERSION
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cp -a {data,examples,miniapps} $PKG/usr/share/$PRGNAM-$VERSION
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cp -a config/defaults.mk $PKG/usr/share/$PRGNAM-$VERSION
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# fix examples
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sed -i -e 's$# MFEM_INSTALL_DIR = ../mfem$MFEM_INSTALL_DIR = /usr$' \
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-e 's$# CONFIG_MK$CONFIG_MK$' \
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-e 's#share/mfem#&-'$VERSION'#' \
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-e 's/^MFEM_LIB_FILE/#&/' \
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$PKG/usr/share/$PRGNAM-$VERSION/examples/makefile
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# fix miniapps
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for file in $(find $PKG/usr/share/$PRGNAM-$VERSION/miniapps -iname makefile); do
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sed -i 's$# MFEM_INSTALL_DIR = ../../mfem$MFEM_INSTALL_DIR = /usr$' $file
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sed -i 's$# CONFIG_MK$CONFIG_MK$' $file
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sed -i 's#share/mfem#&-'$VERSION'#' $file
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sed -i 's#^DEFAULTS_MK.*#DEFAULTS_MK = /usr/share/'$PRGNAM-$VERSION'/defaults.mk#' $file
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done
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sed -i 's#../../general#mfem/general#' $PKG/usr/share/$PRGNAM-$VERSION/miniapps/meshing/{minimal-surface,pminimal-surface}.cpp
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sed -i 's#../../general#mfem/general#' $PKG/usr/share/$PRGNAM-$VERSION/miniapps/navier/navier_solver.cpp
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sed -i 's#../../linalg#mfem/linalg#' $PKG/usr/share/$PRGNAM-$VERSION/miniapps/autodiff/admfem.hpp
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# Don't ship .la files:
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rm -f $PKG/{,usr/}lib${LIBDIRSUFFIX}/*.la
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find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | grep ELF \
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| cut -f 1 -d : | xargs strip --strip-unneeded 2> /dev/null || true
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mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION
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cp -a \
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CHANGELOG CITATION.cff {CODE_OF_CONDUCT,CONTRIBUTING}.md LICENSE doc \
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$PKG/usr/doc/$PRGNAM-$VERSION
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cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild
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mkdir -p $PKG/install
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cat $CWD/slack-desc > $PKG/install/slack-desc
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cd $PKG
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/sbin/makepkg -l y -c n $OUTPUT/$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.$PKGTYPE
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10
academic/mfem/mfem.info
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10
academic/mfem/mfem.info
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PRGNAM="mfem"
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VERSION="4.5"
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HOMEPAGE="https://mfem.org"
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DOWNLOAD="https://github.com/mfem/mfem/archive/v4.5/mfem-4.5.tar.gz"
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MD5SUM="1a93d4d9982612f52b9434b93265b979"
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DOWNLOAD_x86_64=""
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MD5SUM_x86_64=""
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REQUIRES=""
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MAINTAINER="William PC"
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EMAIL="w_calandrini[at]hotmail[dot]com"
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19
academic/mfem/slack-desc
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19
academic/mfem/slack-desc
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# HOW TO EDIT THIS FILE:
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# The "handy ruler" below makes it easier to edit a package description.
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# Line up the first '|' above the ':' following the base package name, and
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# the '|' on the right side marks the last column you can put a character in.
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# You must make exactly 11 lines for the formatting to be correct. It's also
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# customary to leave one space after the ':' except on otherwise blank lines.
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|-----handy-ruler------------------------------------------------------|
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mfem: mfem (library for finite element methods)
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mfem:
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mfem:
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mfem:
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mfem: MFEM is a free, lightweight, scalable C++ library for finite
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mfem: element methods.
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mfem:
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mfem:
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mfem:
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mfem:
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mfem:
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