diff --git a/academic/mfem/README b/academic/mfem/README new file mode 100644 index 0000000000..96f8496889 --- /dev/null +++ b/academic/mfem/README @@ -0,0 +1,16 @@ + MFEM is a free, lightweight, scalable C++ library for finite element +methods. + + + Building options that can be set using the environment variable: + - OMP=yes, use OpenMP. + - MPI=yes, use MPI (requires a MPI implementation either mpich or + openmpi and the hypre and metis package. + - CUDA=yes, requires the CUDA toolkit. + - TESTS=yes, to run the tests. + + Compiling the examples: + # mkdir mfem-examples; cd mfem-examples + # cp -av /usr/share/mfem-4.5/{data,examples} . + # make -C examples + # make diff --git a/academic/mfem/mfem.SlackBuild b/academic/mfem/mfem.SlackBuild new file mode 100644 index 0000000000..f85c2c679d --- /dev/null +++ b/academic/mfem/mfem.SlackBuild @@ -0,0 +1,188 @@ +#!/bin/bash + +# Slackware build script for mfem + +# Copyright 2022 William PC, Seattle (USA) +# All rights reserved. +# +# Redistribution and use of this script, with or without modification, is +# permitted provided that the following conditions are met: +# +# 1. Redistributions of this script must retain the above copyright +# notice, this list of conditions and the following disclaimer. +# +# THIS SOFTWARE IS PROVIDED BY THE AUTHOR "AS IS" AND ANY EXPRESS OR IMPLIED +# WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF +# MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO +# EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, +# SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, +# PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; +# OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, +# WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR +# OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF +# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. + + +cd $(dirname $0) ; CWD=$(pwd) + +PRGNAM=mfem +VERSION=${VERSION:-4.5} +BUILD=${BUILD:-1} +TAG=${TAG:-_SBo} +PKGTYPE=${PKGTYPE:-tgz} + +if [ -z "$ARCH" ]; then + case "$( uname -m )" in + i?86) ARCH=i586 ;; + arm*) ARCH=arm ;; + *) ARCH=$( uname -m ) ;; + esac +fi + +if [ ! -z "${PRINT_PACKAGE_NAME}" ]; then + echo "$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.$PKGTYPE" + exit 0 +fi + +TMP=${TMP:-/tmp/SBo} +PKG=$TMP/package-$PRGNAM +OUTPUT=${OUTPUT:-/tmp} + +if [ "$ARCH" = "i586" ]; then + SLKCFLAGS="-O2 -march=i586 -mtune=i686" + LIBDIRSUFFIX="" +elif [ "$ARCH" = "i686" ]; then + SLKCFLAGS="-O2 -march=i686 -mtune=i686" + LIBDIRSUFFIX="" +elif [ "$ARCH" = "x86_64" ]; then + SLKCFLAGS="-O2 -fPIC" + LIBDIRSUFFIX="64" +else + SLKCFLAGS="-O2" + LIBDIRSUFFIX="" +fi + +set -e + +rm -rf $PKG +mkdir -p $TMP $PKG $OUTPUT +cd $TMP +rm -rf $PRGNAM-$VERSION +tar xvf $CWD/$PRGNAM-$VERSION.tar.gz +cd $PRGNAM-$VERSION +chown -R root:root . +find -L . \ + \( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 \ + -o -perm 511 \) -exec chmod 755 {} \; -o \ + \( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \ + -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \; + + +if [ "${OMP:-no}" == "yes" ]; then + OPT_BUILD="MFEM_USE_OPENMP=YES" +fi + +# this can't be null even without using MPI it has to be set +# to don't throw an error at make +MFEM_MPIEXEC="MFEM_MPIEXEC=mpirun" +if [ "${MPI:-no}" == "yes" ]; then + OPT_BUILD="$OPT_BUILD MFEM_USE_MPI=YES" + OPT_BUILD="$OPT_BUILD MFEM_USE_METIS_5=YES" + # fix hypre location + sed -i 's#^HYPRE_DIR = .*#HYPRE_DIR = /usr#' config/defaults.mk + sed -i 's#$(HYPRE_DIR)/include#&/hypre#' config/defaults.mk + sed -i 's#$(HYPRE_DIR)/lib#&'${LIBDIRSUFFIX}'#' config/defaults.mk + # fix metis location + sed -i 's#METIS_DIR = @MFEM_DIR@/../metis-5.0#METIS_DIR = /usr#' config/defaults.mk + sed -i 's#$(METIS_DIR)/include#&/metis#' config/defaults.mk + sed -i 's#-L$(METIS_DIR)/lib#&'${LIBDIRSUFFIX}'#' config/defaults.mk + # fix for running check with MPI + if pkg-config --exists mpich; then + echo "Using mpich" + MFEM_MPIEXEC="MFEM_MPIEXEC=\"mpirun -host localhost\"" + else + echo "Using openmpi" + export OMPI_ALLOW_RUN_AS_ROOT=1 + export OMPI_ALLOW_RUN_AS_ROOT_CONFIRM=1 + + fi +fi + + +if [ "${CUDA:-no}" == "yes" ]; then + OPT_BUILD="$OPT_BUILD MFEM_USE_CUDA=YES" +fi + +# fix lib and share install location +sed -i 's#$(PREFIX)/lib#&'${LIBDIRSUFFIX}'#' makefile +sed -i 's#$(PREFIX)/share/mfem#&-'${VERSION}'#' makefile + +# "$MFEM_MPIEXEC" \ +CFLAGS="$SLKCFLAGS" \ +CXXFLAGS="$SLKCFLAGS" \ +make config \ + MFEM_STATIC=NO \ + MFEM_SHARED=YES \ + $OPT_BUILD \ + "$MFEM_MPIEXEC" \ + BUILD_DIR=build +cd build +make +make check +if [ "${TESTS:-no}" == "yes" ]; then + make test +fi +make install \ + MFEM_PREFIX=/usr \ + MFEM_INC_DIR="@MFEM_PREFIX@/include" \ + MFEM_LIB_DIR="@MFEM_PREFIX@/lib${LIBDIRSUFFIX}" \ + MFEM_TEST_MK="@MFEM_PREFIX@/share/$PRGNAM-$VERSION/test.mk" \ + PREFIX=$PKG/usr +cd .. + +# fix permissions +find -L $PKG/usr/{include,share} \ + \( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \ + -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \; + +# install data files, examples and miniapps +mkdir -p $PKG/usr/share/$PRGNAM-$VERSION +cp -a {data,examples,miniapps} $PKG/usr/share/$PRGNAM-$VERSION +cp -a config/defaults.mk $PKG/usr/share/$PRGNAM-$VERSION + +# fix examples +sed -i -e 's$# MFEM_INSTALL_DIR = ../mfem$MFEM_INSTALL_DIR = /usr$' \ + -e 's$# CONFIG_MK$CONFIG_MK$' \ + -e 's#share/mfem#&-'$VERSION'#' \ + -e 's/^MFEM_LIB_FILE/#&/' \ + $PKG/usr/share/$PRGNAM-$VERSION/examples/makefile + +# fix miniapps +for file in $(find $PKG/usr/share/$PRGNAM-$VERSION/miniapps -iname makefile); do + sed -i 's$# MFEM_INSTALL_DIR = ../../mfem$MFEM_INSTALL_DIR = /usr$' $file + sed -i 's$# CONFIG_MK$CONFIG_MK$' $file + sed -i 's#share/mfem#&-'$VERSION'#' $file + sed -i 's#^DEFAULTS_MK.*#DEFAULTS_MK = /usr/share/'$PRGNAM-$VERSION'/defaults.mk#' $file +done +sed -i 's#../../general#mfem/general#' $PKG/usr/share/$PRGNAM-$VERSION/miniapps/meshing/{minimal-surface,pminimal-surface}.cpp +sed -i 's#../../general#mfem/general#' $PKG/usr/share/$PRGNAM-$VERSION/miniapps/navier/navier_solver.cpp +sed -i 's#../../linalg#mfem/linalg#' $PKG/usr/share/$PRGNAM-$VERSION/miniapps/autodiff/admfem.hpp + + +# Don't ship .la files: +rm -f $PKG/{,usr/}lib${LIBDIRSUFFIX}/*.la + +find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | grep ELF \ + | cut -f 1 -d : | xargs strip --strip-unneeded 2> /dev/null || true + +mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION +cp -a \ + CHANGELOG CITATION.cff {CODE_OF_CONDUCT,CONTRIBUTING}.md LICENSE doc \ + $PKG/usr/doc/$PRGNAM-$VERSION +cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild + +mkdir -p $PKG/install +cat $CWD/slack-desc > $PKG/install/slack-desc + +cd $PKG +/sbin/makepkg -l y -c n $OUTPUT/$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.$PKGTYPE diff --git a/academic/mfem/mfem.info b/academic/mfem/mfem.info new file mode 100644 index 0000000000..d39a1518f5 --- /dev/null +++ b/academic/mfem/mfem.info @@ -0,0 +1,10 @@ +PRGNAM="mfem" +VERSION="4.5" +HOMEPAGE="https://mfem.org" +DOWNLOAD="https://github.com/mfem/mfem/archive/v4.5/mfem-4.5.tar.gz" +MD5SUM="1a93d4d9982612f52b9434b93265b979" +DOWNLOAD_x86_64="" +MD5SUM_x86_64="" +REQUIRES="" +MAINTAINER="William PC" +EMAIL="w_calandrini[at]hotmail[dot]com" diff --git a/academic/mfem/slack-desc b/academic/mfem/slack-desc new file mode 100644 index 0000000000..118db0fce4 --- /dev/null +++ b/academic/mfem/slack-desc @@ -0,0 +1,19 @@ +# HOW TO EDIT THIS FILE: +# The "handy ruler" below makes it easier to edit a package description. +# Line up the first '|' above the ':' following the base package name, and +# the '|' on the right side marks the last column you can put a character in. +# You must make exactly 11 lines for the formatting to be correct. It's also +# customary to leave one space after the ':' except on otherwise blank lines. + + |-----handy-ruler------------------------------------------------------| +mfem: mfem (library for finite element methods) +mfem: +mfem: +mfem: +mfem: MFEM is a free, lightweight, scalable C++ library for finite +mfem: element methods. +mfem: +mfem: +mfem: +mfem: +mfem: