2013-12-14 03:53:09 +01:00
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TopHat is a fast splice junction mapper for RNA-Seq reads. It aligns
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RNA-Seq reads to mammalian-sized genomes using the ultra high-throughput
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short read aligner Bowtie, and then analyzes the mapping results to
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identify splice junctions between exons.
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TopHat is a collaborative effort between the Institute of Genetic
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Medicine at Johns Hopkins University, the Departments of Mathematics
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and Molecular and Cell Biology at the University of California,
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Berkeley and the Department of Stem Cell and Regenerative Biology at
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Harvard University.
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2015-02-04 14:05:59 +01:00
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A recommended dependency is bowtie2.
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