Don't use the heavy machinery to run "git update-index".
And ignore exit code.
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magit.el
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magit.el
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@ -1957,7 +1957,7 @@ in log buffer."
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(if rebase
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(insert (apply 'format "Rebasing: %s (%s of %s)\n" rebase))))
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(insert "\n")
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(magit-run-git "update-index" "--refresh")
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(magit-git-exit-code "update-index" "--refresh")
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(magit-insert-untracked-files)
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(magit-insert-stashes)
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(magit-insert-topics)
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