| .. |
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abntex
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academic/abntex: Updated for version 20200715_f0a4d3c.
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2022-02-27 22:29:04 -06:00 |
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aenig4
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aline
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aliview
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academic/aliview: Use zulu-openjdk11.
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2022-03-03 15:56:48 +07:00 |
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amd
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amplicon
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amplifx
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antiprism
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academic/antiprism: Remove .la files.
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2022-03-08 09:44:26 +07:00 |
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archaeopteryx
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academic/archaeopteryx: Use zulu-openjdk11.
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2022-03-03 15:56:50 +07:00 |
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aris
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academic/aris: Fix for gcc >= 10.x.
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2022-02-27 22:29:04 -06:00 |
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arka
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armadillo
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arpack
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arpack-ng
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artha
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avl
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bcftools
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academic/bcftools: Update to version 1.15
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2022-03-05 08:18:20 +07:00 |
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bedGraphToBigWig
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bedtools
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biblesync
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bibletime
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bibus
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biopython
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boinc
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academic/boinc: Fix wxPython/wxGTK3 conflict.
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2022-03-09 17:20:43 +07:00 |
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bowtie
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bowtie2
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bowtie2-legacy
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academic/bowtie2-legacy: Patch source.
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2022-03-03 09:38:11 +00:00 |
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btf
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bwa
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cadabra2
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CAFS_divergence
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calc
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calcoo
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various: Use zulu jdk builds for REQUIRES.
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2022-03-03 15:56:51 +07:00 |
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camd
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cap3
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academic/cap3: Note the need to download the tarballs manually.
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2022-02-27 22:29:05 -06:00 |
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CAPS_coevolution
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cblas
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ccolamd
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cdo
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academic/cdo: Updated for version 2.0.4.
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2022-02-17 12:59:54 +07:00 |
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celestia
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academic/celestia: Wrap README at 72 columns.
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2022-03-12 14:34:16 -05:00 |
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chartgeany
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chemtool
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academic/chemtool: Fix build failure with gcc10.
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2022-02-21 02:41:03 -06:00 |
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cholmod
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cistrome-CEAS
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cistrome-conductGO
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cistrome-extra
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cistrome-MACS
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academic/cistrome-MACS: Handle content-disposition download.
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2022-03-05 00:18:21 +13:00 |
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cistrome-mdseqpos
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clark-ugene
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cld2
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clustalo
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academic/clustalo: Remove .la files.
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2022-03-08 09:44:26 +07:00 |
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clustalw
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clustalx
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academic/clustalx: Patch for qt5.
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2022-02-27 22:29:05 -06:00 |
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colamd
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colin
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academic/colin: Use qt4.
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2022-02-27 22:29:05 -06:00 |
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convertall
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copasi
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cryptominisat
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csparse
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cufflinks
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academic/cufflinks: Fix info file.
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2022-03-12 11:26:42 +13:00 |
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cutadapt
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cvc4
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various: Use zulu jdk builds for REQUIRES.
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2022-03-03 15:56:51 +07:00 |
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cxsparse
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dakota
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academic/dakota: Updated for version 6.15.0.
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2022-02-27 22:29:05 -06:00 |
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Data2FCS
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academic/Data2FCS: Use zulu-openjdk11.
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2022-03-03 15:56:48 +07:00 |
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datamash
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DendroPy
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diamond
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ds9
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academic/ds9: Wrap README at 72 columns.
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2022-03-12 14:34:33 -05:00 |
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easy_spice
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ed-v6
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academic/ed-v6: Fix github tarball handling.
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2022-03-01 19:35:43 +07:00 |
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edsim51di
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academic/edsim51di: Update DOWNLOAD to https.
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2022-03-04 02:48:05 +00:00 |
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EMBASSY
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academic/EMBASSY: Remove .la files.
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2022-03-08 09:44:25 +07:00 |
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EMBOSS
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academic/EMBOSS: Remove .la files.
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2022-03-08 09:44:25 +07:00 |
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engauge
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academic/engauge: Updated for version 12.1.
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2022-02-27 22:29:05 -06:00 |
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ent
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eprover
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equalx
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ess
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evopedia_qt
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academic/evopedia_qt: Use qt4.
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2022-02-27 22:29:05 -06:00 |
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exonerate
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extrema
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academic/extrema: Remove .la files.
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2022-03-08 09:44:26 +07:00 |
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fann
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fastqc
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various: Use zulu jdk builds for REQUIRES.
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2022-03-03 15:56:51 +07:00 |
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FCSalyzer
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academic/FCSalyzer: Handle url-encoded filenames.
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2022-03-05 00:17:45 +13:00 |
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fet
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fiji
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academic/fiji: Fix VERSION.
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2022-03-12 11:29:21 +13:00 |
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finchtv
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fityk
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academic/fityk: Fix wxPython/wxGTK3 conflict.
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2022-03-09 17:20:43 +07:00 |
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flann
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flexbar
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free42
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FreeFem
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g3data
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academic/g3data: Update github tarball handling.
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2022-03-01 19:35:44 +07:00 |
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galculator
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gaw3
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Gblocks
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academic/Gblocks: Fix download.
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2022-02-27 22:29:06 -06:00 |
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gchemutils
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academic/gchemutils: Fix typo in script.
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2022-03-09 14:41:35 -05:00 |
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gcompris-qt
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academic/gcompris-qt: Updated for version 2.3.
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2022-03-07 11:06:50 +07:00 |
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geda-gaf
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academic/geda-gaf: Remove .la files.
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2022-03-08 09:44:26 +07:00 |
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gelemental
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academic/gelemental: Remove .la files.
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2022-03-08 09:44:27 +07:00 |
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geneconv
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genius
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academic/genius: Updated for version 1.0.27.
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2022-02-27 22:29:05 -06:00 |
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genometools
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genpak
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GeoGebra
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academic/GeoGebra: Use zulu-openjdk7.
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2022-03-03 15:56:45 +07:00 |
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geomview
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academic/geomview: Remove .la files.
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2022-03-08 09:44:27 +07:00 |
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gerbv
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academic/gerbv: Remove .la files.
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2022-03-08 09:44:27 +07:00 |
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getdp
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ggobi
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academic/ggobi: Updated for version 2.1.11.
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2022-03-09 17:20:42 +07:00 |
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ghemical
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academic/ghemical: Fix build.
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2022-02-27 22:29:05 -06:00 |
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glpk
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academic/glpk: Remove .la files.
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2022-03-08 09:44:25 +07:00 |
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gmsh
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gnucap
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gp2fasta
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academic/gp2fasta: Use qt4.
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2022-02-27 22:29:05 -06:00 |
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gpredict
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academic/gpredict: revert to latest stable version 2.2.1
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2022-02-24 22:05:13 +07:00 |
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grace
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gresistor
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gretl
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academic/gretl: Remove .la files.
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2022-03-08 09:44:27 +07:00 |
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gri
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Gridcoin-Research
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academic/Gridcoin-Research: Use MAKEFLAGS to pass numjobs.
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2022-02-27 22:29:04 -06:00 |
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grpn
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gspiceui
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gtkwave
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academic/gtkwave: Updated for version 3.3.111.
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2022-02-27 22:29:05 -06:00 |
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gtypist
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gwyddion
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academic/gwyddion: Remove .la files.
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2022-03-08 09:44:27 +07:00 |
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h5utils
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harminv
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academic/harminv: Remove .la files.
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2022-03-08 09:44:27 +07:00 |
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HMMER
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hyphy
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IGV
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io_lib
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academic/io_lib: Remove .la files.
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2022-03-08 09:44:28 +07:00 |
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irsim
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isoelectric-point
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academic/isoelectric-point: Use qt4.
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2022-02-27 22:29:06 -06:00 |
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iTest
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academic/iTest: Use qt4.
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2022-02-27 22:29:06 -06:00 |
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itex2mml
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ITK
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jalview
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academic/jalview: Use zulu-openjdk11.
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2022-03-03 15:56:49 +07:00 |
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jellyfish_k-mer
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academic/jellyfish_k-mer: Remove .la files.
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2022-03-08 09:44:28 +07:00 |
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jpicedt
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various: Use zulu jdk builds for REQUIRES.
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2022-03-03 15:56:51 +07:00 |
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jugglinglab
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various: Use zulu jdk builds for REQUIRES.
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2022-03-03 15:56:51 +07:00 |
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karma
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kiwisolver
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klavaro
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klu
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knime
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kraken
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Kst
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academic/Kst: patch to fix the path for H5Cpp.h file
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2022-03-03 15:56:37 +07:00 |
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ktikz
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kurso
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academic/kurso: x86 is unsupported.
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2022-03-12 11:30:45 +13:00 |
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labplot2
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academic/labplot2: Wrap README at 72 columns.
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2022-03-12 14:34:49 -05:00 |
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ladr
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academic/ladr: Wrap README at 72 columns.
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2022-03-12 14:35:24 -05:00 |
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lalnview
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lapack95
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lapacke
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latex2html
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ldl
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libghemical
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academic/libghemical: Remove .la files.
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2022-03-08 09:44:28 +07:00 |
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link-grammar
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academic/link-grammar: Remove .la files.
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2022-03-08 09:44:28 +07:00 |
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locarna
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academic/locarna: Remove .la files.
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2022-03-08 09:44:28 +07:00 |
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lpsolve
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mafft
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magic
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mathics
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mathjax2
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academic/mathjax2: Fix github tarball handling.
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2022-03-01 19:35:44 +07:00 |
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mathomatic
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matio
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academic/matio: Remove .la files.
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2022-03-08 09:44:28 +07:00 |
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maxima
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meep
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academic/meep: Remove .la files.
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2022-03-08 09:44:28 +07:00 |
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megax
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meme-db-gomo
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meme-db-motif
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meme-db-tgene
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meme-suite
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mendeleydesktop
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MetaPhlAn2
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metis
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mkDSSP
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mpb
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academic/mpb: Remove .la files.
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2022-03-08 09:44:29 +07:00 |
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mrbayes
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muscle
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ncbi-blast
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ncbi-blast+
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ncbi-rmblastn
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nco
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academic/nco: Remove .la files.
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2022-03-08 09:44:29 +07:00 |
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ncview
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ngspice
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academid/ngspice: Fix URLs.
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2022-03-11 06:13:08 +07:00 |
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novocraft
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octave
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academic/octave: Wrap README at 72 columns.
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2022-03-12 14:35:56 -05:00 |
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openboard
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academic/openboard: Fix slack-desc.
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2022-03-12 11:31:57 +13:00 |
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OpenFOAM
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pal2nal
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paml
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pamlX
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academic/pamlX: Use qt4.
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2022-02-27 22:29:06 -06:00 |
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papi
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academic/papi: Updated for version 6.0.0.1.
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2022-02-27 22:29:06 -06:00 |
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pari
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parmetis
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patsy
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pcalc
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pcb
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perlprimer
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PhyML
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pianobooster
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academic/pianobooster: Added the dependency ftgl.
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2022-02-27 22:29:06 -06:00 |
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plasmidomics
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primer3
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pspp
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academic/pspp: Updated for version 1.4.1.
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2022-02-27 22:29:06 -06:00 |
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pulseview
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academic/pulseview: Updated for version 20220225_4efbe9b.
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2022-02-27 22:29:06 -06:00 |
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PyAMG
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pyCRAC
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academic/pyCRAC: Update MD5SUM.
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2022-03-04 03:30:43 +00:00 |
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pyfits
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pysam
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academic/pysam: Use internal htslib-1.14
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2022-03-05 08:20:12 +07:00 |
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qalculate-gtk
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qcl
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qhull
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qrupdate
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academic/qrupdate: Wrap README at 72 columns.
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2022-03-12 14:36:23 -05:00 |
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qucs
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R
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RAxML
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rbio
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reduce-algebra
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RepeatMasker
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root
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rpy2
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sage
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sage-bin
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samtools
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academic/samtools: Update to version 1.15
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2022-03-05 08:18:59 +07:00 |
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samtools-legacy
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scidavis
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scilab
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various: Use zulu jdk builds for REQUIRES.
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2022-03-03 15:56:51 +07:00 |
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scipy
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scipy3
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academic/scipy3: Wrap README at 72 columns.
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2022-03-12 14:37:53 -05:00 |
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seaview
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academic/seaview: Removed the treerecs dependency (ftb).
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2022-03-01 19:35:45 +07:00 |
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seqkit
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SeqMonk
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sequence-analysis
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academic/sequence-analysis: Use zulu-openjdk11.
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2022-03-03 15:56:49 +07:00 |
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Shark
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sigrok-cli
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academic/sigrok-cli: Updated for version 20220222_525f481.
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2022-03-01 19:35:46 +07:00 |
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siril
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academic/siril: Fix VERSION.
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2022-03-12 11:36:35 +13:00 |
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smath-studio
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snpEff
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academic/snpEff: Use zulu-openjdk11.
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2022-03-03 15:56:49 +07:00 |
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solfege
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spades
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speedcrunch
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spiceopus
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spidey
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spqr
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academic/spqr: Wrap README at 72 columns.
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2022-03-12 14:38:22 -05:00 |
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squizz
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academic/squizz: Remove .la files.
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2022-03-08 09:44:29 +07:00 |
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staden
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STAR
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stellarium
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stringtie
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SU2
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suitesparse
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academic/suitesparse: Wrap README at 72 columns.
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2022-03-12 14:39:07 -05:00 |
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suitesparseconfig
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sundials
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sword
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sword-data-kjv
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t_coffee
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academic/t_coffee: Updated for version 13.45.58.c355d11.
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2022-03-01 19:35:46 +07:00 |
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tabix-legacy
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tiemu
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tilem
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academic/tilem: Fix for gcc >= 10.x.
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2022-03-01 19:35:46 +07:00 |
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tilem2
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tkgate
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topdraw
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tophat
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academic/tophat: Use -std=c++14.
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2022-03-03 09:38:11 +00:00 |
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treebest-ensembl
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academic/treebest-ensembl: Wrap README at 72 columns.
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2022-03-12 14:40:15 -05:00 |
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TreeGraph
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academic/TreeGraph: Use zulu-openjdk11.
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2022-03-03 15:56:48 +07:00 |
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treeviewx
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trfind
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trimmomatic
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academic/trimmomatic: Use zulu-openjdk11.
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2022-03-03 15:56:49 +07:00 |
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tuxmath
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academic/tuxmath: Rename blits. Remove dupe lan player.
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2022-03-04 09:46:12 +00:00 |
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tuxtype2
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ucsc-blat
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ugene
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academic/ugene: Wrap README at 72 columns.
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2022-03-12 14:40:34 -05:00 |
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umfpack
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academic/umfpack: Wrap README at 72 columns.
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2022-03-12 14:40:59 -05:00 |
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units
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vcftools
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verilator
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academic/verilator: Fix slack-desc.
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2022-03-12 12:01:20 +13:00 |
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verilog
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academic/verilog: Updated for version 11.0.
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2022-03-03 10:24:49 +00:00 |
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veusz
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ViennaRNA
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academic/ViennaRNA: Remove .la files.
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2022-03-08 09:44:25 +07:00 |
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wehi-cellsymphony
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academic/wehi-cellsymphony: Use zulu-openjdk11.
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2022-03-03 15:56:49 +07:00 |
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wehi-deid
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academic/wehi-deid: Use zulu-openjdk11.
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2022-03-03 15:56:49 +07:00 |
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wehi-hackit
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academic/wehi-hackit: Use zulu-openjdk11.
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2022-03-03 15:56:49 +07:00 |
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wehi-weasel
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academic/wehi-weasel: Use zulu-openjdk11.
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2022-03-03 15:56:48 +07:00 |
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WEVOTE
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wmcalc
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WordNet
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wxMaxima
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academic/wxMaxima: Fix github tarball handling.
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2022-03-01 19:35:44 +07:00 |
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xcircuit
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xephem
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xflr5
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academic/xflr5: Wrap README at 72 columns.
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2022-03-12 14:41:26 -05:00 |
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xfoil
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xiphos
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xoscope
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z3
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academic/z3: Fix github tarball handling.
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2022-03-01 19:35:44 +07:00 |
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ZeGrapher
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zotero
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