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18 lines
864 B
Text
18 lines
864 B
Text
Bowtie 2 is an ultrafast and memory-efficient tool for aligning
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sequencing reads to long reference sequences. It is particularly good
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at aligning reads of about 50 up to 100s or 1,000s of characters, and
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particularly good at aligning to relatively long (e.g. mammalian)
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genomes. Bowtie 2 indexes the genome with an FM Index to keep its
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memory footprint small: for the human genome, its memory footprint is
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typically around 3.2 GB. Bowtie 2 supports gapped, local, and paired-
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end alignment modes.
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NOTE!
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This is an older version of the program, kept here for compatibility
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with Ugene. You can safely install it along the new one. When you start
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Ugene, go to Settings > Preferences > External Tools and manually select
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the legacy binaries in /usr/bin/
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Please cite:
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Langmead B, Salzberg S. Fast gapped-read alignment with Bowtie 2.
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Nature Methods. 2012, 9:357-359.
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