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18 lines
790 B
Text
18 lines
790 B
Text
The program Flexbar preprocesses high-throughput sequencing data
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efficiently. It demultiplexes barcoded runs and removes adapter
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sequences. Moreover, trimming and filtering features are provided.
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Flexbar increases read mapping rates and improves genome as well as
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transcriptome assemblies. It supports next-generation sequencing data
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in fasta and fastq format, e.g. from Roche 454 and the Illumina
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platform.
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The script downloads the segan-library needed for compilation.
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References
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Johannes T. Roehr, Christoph Dieterich, Knut Reinert:
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Flexbar 3.0 - SIMD and multicore parallelization. Bioinformatics 2017.
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Matthias Dodt, Johannes T. Roehr, Rina Ahmed, Christoph Dieterich:
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Flexbar - flexible barcode and adapter processing for next-generation
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sequencing platforms. Biology 2012.
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