mirror of
https://github.com/Ponce/slackbuilds
synced 2024-11-22 19:44:21 +01:00
85 lines
2.7 KiB
Bash
85 lines
2.7 KiB
Bash
#!/bin/sh
|
|
|
|
# Slackware build script for fastqc
|
|
|
|
# Copyright 2015-2016 Petar Petrov slackalaxy@gmail.com
|
|
# All rights reserved.
|
|
#
|
|
# Redistribution and use of this script, with or without modification, is
|
|
# permitted provided that the following conditions are met:
|
|
#
|
|
# 1. Redistributions of this script must retain the above copyright
|
|
# notice, this list of conditions and the following disclaimer.
|
|
#
|
|
# THIS SOFTWARE IS PROVIDED BY THE AUTHOR "AS IS" AND ANY EXPRESS OR IMPLIED
|
|
# WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
|
|
# MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO
|
|
# EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
|
|
# SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
|
|
# PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
|
|
# OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
|
|
# WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
|
|
# OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
|
|
# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
|
|
|
|
PRGNAM=fastqc
|
|
SRCNAM=FastQC
|
|
VERSION=${VERSION:-0.11.5}
|
|
SRCVER=${SRCVER:-v0.11.5}
|
|
|
|
BUILD=${BUILD:-1}
|
|
TAG=${TAG:-_SBo}
|
|
|
|
ARCH=noarch
|
|
|
|
# Jar files names and versions
|
|
JBZIP=jbzip2-0.9.jar
|
|
SAM=sam-1.103.jar
|
|
CISD=cisd-jhdf5.jar
|
|
|
|
CWD=$(pwd)
|
|
TMP=${TMP:-/tmp/SBo}
|
|
PKG=$TMP/package-$PRGNAM
|
|
OUTPUT=${OUTPUT:-/tmp}
|
|
|
|
set -e
|
|
|
|
rm -rf $PKG
|
|
mkdir -p $TMP $PKG $OUTPUT
|
|
cd $TMP
|
|
rm -rf $SRCNAM
|
|
unzip $CWD/${PRGNAM}_${SRCVER}.zip
|
|
cd $SRCNAM
|
|
chown -R root:root .
|
|
find -L . \
|
|
\( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 \
|
|
-o -perm 511 \) -exec chmod 755 {} \; -o \
|
|
\( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \
|
|
-o -perm 440 -o -perm 400 \) -exec chmod 644 {} \;
|
|
|
|
install -D -m755 $PRGNAM $PKG/usr/share/java/$PRGNAM/$PRGNAM
|
|
cp -a Configuration net org Templates uk $JBZIP $SAM $CISD $PKG/usr/share/java/$PRGNAM
|
|
|
|
mkdir -p $PKG/usr/bin
|
|
cd $PKG/usr/bin
|
|
ln -s ../share/java/$PRGNAM/$PRGNAM
|
|
cd -
|
|
|
|
find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | grep ELF \
|
|
| cut -f 1 -d : | xargs strip --strip-unneeded 2> /dev/null || true
|
|
|
|
mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION
|
|
cp -a Help *.txt $PKG/usr/doc/$PRGNAM-$VERSION
|
|
cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild
|
|
|
|
# Menu item and icon
|
|
mkdir -p $PKG/usr/share/{applications,pixmaps}
|
|
cp $CWD/$PRGNAM.desktop $PKG/usr/share/applications
|
|
cp $CWD/$PRGNAM.png $PKG/usr/share/pixmaps
|
|
|
|
mkdir -p $PKG/install
|
|
cat $CWD/slack-desc > $PKG/install/slack-desc
|
|
cat $CWD/doinst.sh > $PKG/install/doinst.sh
|
|
|
|
cd $PKG
|
|
/sbin/makepkg -l y -c n $OUTPUT/$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.${PKGTYPE:-tgz}
|