mirror of
https://github.com/Ponce/slackbuilds
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157 lines
5.3 KiB
Bash
157 lines
5.3 KiB
Bash
#!/bin/sh
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# Slackware build script for staden
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# Copyright 2011 Petar Petrov, ppetrov@paju.oulu.fi
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# All rights reserved.
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#
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# Redistribution and use of this script, with or without modification, is
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# permitted provided that the following conditions are met:
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#
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# 1. Redistributions of this script must retain the above copyright
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# notice, this list of conditions and the following disclaimer.
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#
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# THIS SOFTWARE IS PROVIDED BY THE AUTHOR "AS IS" AND ANY EXPRESS OR IMPLIED
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# WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
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# MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO
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# EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
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# SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
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# PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
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# OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
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# WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
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# OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
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# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
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PRGNAM=staden
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VERSION=${VERSION:-2.0.0b9}
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BUILD=${BUILD:-1}
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TAG=${TAG:-_SBo}
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if [ -z "$ARCH" ]; then
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case "$( uname -m )" in
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i?86) ARCH=i486 ;;
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arm*) ARCH=arm ;;
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*) ARCH=$( uname -m ) ;;
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esac
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fi
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SLKTCL=tcl8.5.9 # Slackware 13.37 sources for TCL
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SLKTK=tk8.5.9 # Slackware 13.37 sources for TK
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TKLIB=tklib0.5 # Folder name of TKLIB libraries, see line 117.
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CWD=$(pwd)
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TMP=${TMP:-/tmp/SBo}
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PKG=$TMP/package-$PRGNAM
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OUTPUT=${OUTPUT:-/tmp}
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if [ "$ARCH" = "i486" ]; then
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SLKCFLAGS="-O2 -march=i486 -mtune=i686"
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LIBDIRSUFFIX=""
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elif [ "$ARCH" = "i686" ]; then
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SLKCFLAGS="-O2 -march=i686 -mtune=i686"
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LIBDIRSUFFIX=""
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elif [ "$ARCH" = "x86_64" ]; then
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SLKCFLAGS="-O2 -fPIC"
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LIBDIRSUFFIX="64"
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else
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SLKCFLAGS="-O2"
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LIBDIRSUFFIX=""
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fi
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set -e
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rm -rf $PKG
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mkdir -p $TMP $PKG $OUTPUT
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cd $TMP
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rm -rf $PRGNAM-$VERSION
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mkdir $PRGNAM-$VERSION
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cd $PRGNAM-$VERSION
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tar xvf $CWD/$PRGNAM-$VERSION-src.tar.gz
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tar xvf $CWD/${PRGNAM}_doc-$VERSION-src.tar.gz
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# The sources of TCL and TK are expected to be in /tmp at build time,
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# so we unpack them in the build directory and create symlinks in /tmp.
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rm -f /tmp/$SLKTCL
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rm -f /tmp/$SLKTK
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tar xvf $CWD/$SLKTCL-src.tar.xz
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tar xvf $CWD/$SLKTK-src.tar.xz
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ln -s $TMP/$PRGNAM-$VERSION/$SLKTCL /tmp/$SLKTCL
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ln -s $TMP/$PRGNAM-$VERSION/$SLKTK /tmp/$SLKTK
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chown -R root:root $PRGNAM-$VERSION-src ${PRGNAM}_doc-$VERSION-src
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find $PRGNAM-$VERSION-src ${PRGNAM}_doc-$VERSION-src \
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\( -perm 777 -o -perm 775 -o -perm 711 -o -perm 555 -o -perm 511 \) \
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-exec chmod 755 {} \; -o \
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\( -perm 666 -o -perm 664 -o -perm 600 -o -perm 444 -o -perm 440 -o -perm 400 \) \
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-exec chmod 644 {} \;
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cd $PRGNAM-$VERSION-src
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# On Slackware64, the components of staden (like GAP4, GAP5, PREGAP4,
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# SPIN, TREV) will not run, as they still expect their libraries to be
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# in /usr/lib not /usr/lib64. Let's correct the libraries path.
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sed -i "s:$STADENROOT/lib:$STADENROOT/lib${LIBDIRSUFFIX}:g" \
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global.mk staden.profile copy_reads/copy_reads gap4/gap4 gap5/gap5 \
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gap5/gap5_consensus gap5/gap5_export gap5/tg_index gap5/tg_view \
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prefinish/finish_sanger prefinish/prefinish pregap4/pregap4 spin/spin \
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spin_emboss/create_emboss_files trev/trev
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CFLAGS="$SLKCFLAGS" \
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CXXFLAGS="$SLKCFLAGS" \
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./configure \
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--prefix=/usr \
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--libdir=/usr/lib${LIBDIRSUFFIX} \
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--sysconfdir=/etc \
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--localstatedir=/var \
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--mandir=/usr/man \
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--docdir=/usr/doc/$PRGNAM-$VERSION \
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--with-tklib=/usr/lib${LIBDIRSUFFIX}/$TKLIB \
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--build=$ARCH-slackware-linux
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make
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make install DESTDIR=$PKG
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# Build documentation. In the process, texi2dvi looks for tex and
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# that's why the SlackBuild should be run as real root (su -).
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# ## (or just source /etc/profile ) --rworkman
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cd ../${PRGNAM}_doc-$VERSION-src
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# Fix the doc and man pages paths
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sed "s:{datarootdir}/doc/staden:{prefix}/doc/$PRGNAM-$VERSION:" -i Makefile
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sed "s:{datarootdir}/man:{prefix}/man:" -i Makefile
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# Remove this, or there will be an error at the "make install" line.
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rm -rf i/i
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# Generate documentation. If you want it in the US letter format,
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# change the next line to "make unix PAPER=us".
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make unix
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make install DESTDIR=$PKG
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# Now that we're done building, let's remove those symlinks from earlier...
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rm -f /tmp/$SLKTCL /tmp/$SLKTK
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find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | grep ELF \
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| cut -f 1 -d : | xargs strip --strip-unneeded 2> /dev/null || true
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find $PKG/usr/man -type f -exec gzip -9 {} \;
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for i in $( find $PKG/usr/man -type l ) ; do ln -s $( readlink $i ).gz $i.gz ; rm $i ; done
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mkdir -p $PKG/usr/share/{applications,pixmaps}
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cp $CWD/desktop/* $PKG/usr/share/applications
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cp $CWD/$PRGNAM.png $PKG/usr/share/pixmaps
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mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION
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cd ../$PRGNAM-$VERSION-src
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cp -a ChangeLog NEWS README.build $PKG/usr/doc/$PRGNAM-$VERSION
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cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild
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cat $CWD/References > $PKG/usr/doc/$PRGNAM-$VERSION/References
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# Staden components expect the manual to be in /usr/share/doc/staden.
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ln -s $PRGNAM-$VERSION $PKG/usr/doc/$PRGNAM
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rm -rf $PKG/usr/share/doc # This is empty
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mkdir -p $PKG/install
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cat $CWD/slack-desc > $PKG/install/slack-desc
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cat $CWD/doinst.sh > $PKG/install/doinst.sh
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cd $PKG
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/sbin/makepkg -l y -c n $OUTPUT/$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.${PKGTYPE:-tgz}
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