Petar Petrov d8a200cc2a academic/mafft: update for version 7.475 ... Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>		2021-05-18 23:40:11 +07:00
..
abella
abntex
aenig4
aline	academic/aline: update README	2021-05-18 23:40:05 +07:00
aliview	academic/aliview: update for version 1.27 + switch to adoptopenjdk	2021-05-18 23:40:05 +07:00
amd
amplicon	academic/amplicon: update README	2021-05-18 23:40:05 +07:00
amplifx	academic/amplifx: update Copyright years + web-site	2021-05-18 23:40:05 +07:00
antiprism	academic/antiprism: Added -fpermissive to the CXXFLAGS.	2021-04-17 23:08:20 -05:00
archaeopteryx	academic/archaeopteryx: update copyright year + switch to adoptopenjdk	2021-05-18 23:40:05 +07:00
aris
arka	academic/arka: fix build + misc cleanups	2021-05-18 23:40:05 +07:00
armadillo
arpack
arpack-ng
artha	academic/artha: Updated for version 1.0.5.	2021-04-17 23:09:19 -05:00
avl
avogadro
bcftools	academic/bcftools: Updated for version 1.12.	2021-03-27 10:23:16 +07:00
bedGraphToBigWig	academic/bedGraphToBigWig: update copyright year	2021-05-18 23:40:05 +07:00
bedtools	academic/bedtools: update for version 2.30.0	2021-05-18 23:40:06 +07:00
biblesync
bibletime	academic/bibletime: Fixed dep info	2021-04-18 14:45:44 -05:00
bibus
biopython	academic/biopython: update for version 1.78 + fix build with python3	2021-05-18 23:40:06 +07:00
boinc	academic/boinc: Updated README and email	2021-04-18 21:39:22 -05:00
bowtie	academic/bowtie: update for version 1.3.0	2021-05-18 23:40:06 +07:00
bowtie2	academic/bowtie2: Fixed dep info	2021-04-18 22:44:35 +02:00
bowtie2-legacy
bpp-core	academic/bpp-core: update copyright year	2021-05-18 23:40:06 +07:00
bpp-phyl	academic/bpp-phyl: update copyright year	2021-05-18 23:40:06 +07:00
bpp-phyl-omics	academic/bpp-phyl-omics: update copyright year	2021-05-18 23:40:06 +07:00
bpp-popgen	academic/bpp-popgen: update copyright year	2021-05-18 23:40:06 +07:00
bpp-seq	academic/bpp-seq: update copyright year	2021-05-18 23:40:07 +07:00
bpp-seq-omics	academic/bpp-seq-omics: update copyright year	2021-05-18 23:40:07 +07:00
bpp1.9-numcalc	academic/bpp1.9-* update copyright year	2021-05-18 23:40:07 +07:00
bpp1.9-phyl	academic/bpp1.9-* update copyright year	2021-05-18 23:40:07 +07:00
bpp1.9-seq	academic/bpp1.9-* update copyright year	2021-05-18 23:40:07 +07:00
bpp1.9-utils	academic/bpp1.9-* update copyright year	2021-05-18 23:40:07 +07:00
bppsuite	academic/bppsuite: update copyright year	2021-05-18 23:40:07 +07:00
btf
bwa	academic/bwa: fix build -fcommon	2021-05-18 23:40:07 +07:00
cadabra2	academic/cadabra2: Fixed dep info	2021-04-18 14:45:44 -05:00
CAFS_divergence	academic/CAFS_divergence: update Copyright year	2021-05-18 23:40:00 +07:00
calc	academic/calc: Updated for version 2.12.9.1.	2021-04-19 20:19:36 -05:00
calcoo	academic/calcoo: Updated copyright	2021-04-22 23:02:32 -05:00
camd
cap3	academic/cap3: use x84_64 not opteron64 binary	2021-05-18 23:40:07 +07:00
CAPS_coevolution	academic/CAPS_coevolution: update Copyright years and README	2021-05-18 23:40:02 +07:00
cblas	academic/cblas: Updated for version 3.9.1.	2021-04-17 11:47:42 +07:00
ccolamd
cdo	academic/cdo: Updated for version 1.9.10.	2021-02-14 06:28:01 +07:00
celestia
chartgeany	academic/chartgeany: Fixed dep info in README	2021-04-18 22:49:52 +02:00
chemtool	academic/chemtool: Updated copyright	2021-04-22 23:02:32 -05:00
cholmod
cistrome-CEAS	academic/cistrome-CEAS: update copyright year	2021-05-18 23:40:07 +07:00
cistrome-conductGO	academic/cistrome-conductGO: update copyright years	2021-05-18 23:40:08 +07:00
cistrome-extra	academic/cistrome-extra: fix download link	2021-05-18 23:40:08 +07:00
cistrome-MACS	academic/cistrome-MACS: update copyright years	2021-05-18 23:40:08 +07:00
cistrome-mdseqpos	academic/cistrome-mdseqpos: fis REQUIRES and build with python2	2021-05-18 23:40:08 +07:00
clark-ugene	academic/clark-ugene: update copyright year	2021-05-18 23:40:08 +07:00
cld2
clustalo	academic/clustalo: update copyright years	2021-05-18 23:40:08 +07:00
clustalw	academic/clustalw: misc cleanups	2021-05-18 23:40:08 +07:00
clustalx
colamd
colin	academic/colin: Fixed dep info	2021-04-18 14:45:44 -05:00
convertall	academic/convertall: Fixed dep info	2021-04-18 22:52:05 +02:00
copasi
coq
cryptominisat
csparse
cufflinks	academic/cufflinks: use binaries	2021-05-18 23:40:09 +07:00
cutadapt	academic/cutadapt: update copyright years	2021-05-18 23:40:09 +07:00
cvc4
cxsparse
dakota
Data2FCS	academic/Data2FCS: update Copyright year and REQUIRES to adoptopenjdk	2021-05-18 23:40:02 +07:00
datamash	academic/datamash: update copyright years	2021-05-18 23:40:09 +07:00
DendroPy	academic/DendroPy: update Copyright year	2021-05-18 23:40:03 +07:00
diamond	academic/diamond: update copyright years	2021-05-18 23:40:09 +07:00
drawtiming
ds9	academic/ds9: Updated for version 8.2.1.	2021-04-02 10:31:08 +07:00
easy_spice
ed-v6
edsim51di
EMBASSY	academic/EMBASSY: fix x86 arch and add -fcommon for PHYLIPNEW	2021-05-18 23:40:03 +07:00
EMBOSS	academic/EMBOSS: fix x86 arch and REQUIRES="adoptopenjdk"	2021-05-18 23:40:03 +07:00
engauge	academic/engauge: Fixed dep info	2021-04-18 22:54:40 +02:00
ent
eprover
equalx
ess
evopedia_qt
exonerate	academic/exonerate: update copyright years	2021-05-18 23:40:09 +07:00
extrema
fann
fastqc
FCSalyzer	academic/FCSalyzer: update for version 0.9.22-alpha, switch to adoptopenjdk	2021-05-18 23:40:03 +07:00
fet	academic/fet: Fixed dep info	2021-04-18 22:55:40 +02:00
fiji	academic/fiji: update for version 20201104_1356	2021-05-18 23:40:09 +07:00
finchtv	academic/finchtv: update webpage link	2021-05-18 23:40:10 +07:00
fityk	academic/fityk: Fixed dep info in README	2021-04-18 22:57:01 +02:00
flann
flashqard
flexbar
free42
FreeFem
g3data
galculator
gaw3
Gblocks	academic/Gblocks: update Copyright year + misc cleanups	2021-05-18 23:40:03 +07:00
gchemutils	academic/gchemutils: update copyright info	2021-05-18 23:40:10 +07:00
gcompris	academic/gcompris: Switch to https.	2021-04-18 21:37:23 -05:00
gcompris-qt	academic/gcompris-qt: Switch to https.	2021-04-18 21:37:23 -05:00
geda-gaf	academic/geda-gaf: Added the new dependency guile1.8.	2021-04-17 23:24:31 -05:00
gelemental	academic/gelemental: remove unnecessary patch	2021-05-18 23:40:10 +07:00
geneconv	academic/geneconv: misc cleanups	2021-05-18 23:40:10 +07:00
genius	academic/genius: Added the new dependency vte2.	2021-04-17 23:24:32 -05:00
genometools	academic/genometools: add patch for gcc10 and fix build	2021-05-18 23:40:10 +07:00
genpak	academic/genpak: misc cleanups	2021-05-18 23:40:10 +07:00
GeoGebra
geomview
gerbv
getdp
ggobi
ghemical
glpk
gmsh
gnucap
gp2fasta
gpredict
grace
gresistor
gretl	academic/gretl: Fixed dep info	2021-04-18 23:02:31 +02:00
gri
Gridcoin-Research	academic/Gridcoin-Research: Updated deps README email	2021-04-18 21:43:33 -05:00
grpn
gspiceui
gtkwave
gtypist
gwyddion	academic/gwyddion: Fixed dep info in README	2021-04-18 23:03:55 +02:00
h5utils
harminv
HMMER	academic/HMMER: update for version 3.3.2	2021-05-18 23:40:03 +07:00
hyphy	academic/hyphy/: update for version 2.5.31	2021-05-18 23:40:10 +07:00
IGV	academic/IGV: update for version 2.9.4	2021-05-18 23:40:03 +07:00
io_lib	academic/io_lib. update for version 1.14.14	2021-05-18 23:40:11 +07:00
irsim
isoelectric-point
iTest
itex2mml
ITK	academic/ITK: Downgrade and add GCC 10 support.	2021-04-18 02:00:20 -05:00
jalview	academic/jalview: update for version 2.11.1.4	2021-05-18 23:40:11 +07:00
jellyfish_k-mer	academic/jellyfish_k-mer: update copyright years	2021-05-18 23:40:11 +07:00
jpicedt
jugglinglab
karma
kiwisolver
klavaro
klu
knime
kraken	academic/kraken: update copyright year	2021-05-18 23:40:11 +07:00
Kst	academic/Kst: Fixed dep info in README	2021-04-18 22:31:55 +02:00
ktikz
kurso
labplot2	academic/labplot2: Fixed dep info in README	2021-04-18 23:08:39 +02:00
ladr
lalnview	academic/lalnview: update copyright years	2021-05-18 23:40:11 +07:00
lapack95
lapacke	academic/lapacke: Updated for version 3.9.1.	2021-04-17 11:47:43 +07:00
latex2html
ldl
libghemical
link-grammar
locarna
lpsolve
mafft	academic/mafft: update for version 7.475	2021-05-18 23:40:11 +07:00
magic
mathics	academic/mathics: Fix REQUIRES for python2.	2021-05-08 01:41:56 +07:00
mathomatic
matio
maxima	academic/maxima: Updated for version 5.44.0.	2021-03-20 11:00:46 +07:00
meep
megax
meme-db-gomo
meme-db-motif
meme-db-tgene
meme-suite	academic/meme-suite: Fixed dep info	2021-04-18 23:13:53 +02:00
mendeleydesktop	academic/mendeleydesktop: Fixed dep info	2021-04-18 23:16:08 +02:00
MetaPhlAn2	academic/MetaPhlAn2: update for version 20201202_git4e4416	2021-05-18 23:40:04 +07:00
metis
mkDSSP
Mnemosyne	academic/Mnemosyne: Fixed dep info	2021-04-18 22:34:40 +02:00
mpb
mrbayes
muscle
ncbi-blast
ncbi-blast+	academic/ncbi-blast+: Fixed dep info	2021-04-18 14:45:47 -05:00
ncbi-rmblastn
nco	academic/nco: Updated for version 4.9.7.	2021-02-14 06:28:00 +07:00
ncview
ngspice	academic/ngspice: KiCAD build fixes.	2021-03-13 09:02:37 +07:00
novocraft
octave	academic/octave: Remove Qt4 support	2021-04-21 20:04:43 -05:00
openboard	academic/openboard: Added.	2021-05-08 00:48:23 +07:00
OpenFOAM
pal2nal
paml
pamlX
papi
pari	academic/pari: Updated for version 2.13.1.	2021-04-17 11:47:40 +07:00
parmetis
patsy	academic/patsy: Fixed dep info	2021-04-18 23:19:48 +02:00
pcalc
pcb
perlprimer
PhyML	academic/PhyML: update Copyright years	2021-05-18 23:40:04 +07:00
pianobooster
plasmidomics
prank-msa
primer3	academic/primer3: Respect our CFLAGS, added -fpermissive.	2021-04-17 23:54:36 -05:00
pspp	academic/pspp: Fixed dep info	2021-04-18 23:21:22 +02:00
pulseview	academic/pulseview: Fixed dep info	2021-04-18 23:21:48 +02:00
PyAMG
pyCRAC	academic/pyCRAC: Fixed dep info	2021-04-18 23:22:23 +02:00
pyfits
pysam	academic/pysam: Fixed dep info	2021-04-18 23:23:05 +02:00
qalculate-gtk	academic/qalculate-gtk: Fixed dep information	2021-04-18 14:31:54 -05:00
qcl
qhull
qrupdate	academic/qrupdate: Workaround to build with gcc >= 10.x.	2021-04-17 23:56:17 -05:00
QtiPlot
qucs
R	academic/R: Fixed dep info	2021-04-18 22:37:03 +02:00
RAxML	academic/RAxML: update Copyright year	2021-05-18 23:40:04 +07:00
rbio
reduce-algebra
RepeatMasker	academic/RepeatMasker: update for version 4.1.2_p1	2021-05-18 23:40:04 +07:00
root	academic/root: Updated for version 6.10.02.	2021-04-17 23:57:12 -05:00
rpy2	academic/rpy2: Updated for version 3.4.3.	2021-04-02 09:17:41 +07:00
sage	academic/sage: Updated for version 9.2.	2021-04-17 23:57:58 -05:00
sage-bin
samtools	academic/samtools: Updated for version 1.12.	2021-03-27 10:23:15 +07:00
samtools-legacy
scidavis	academic/scidavis: Fixed dep info in README	2021-04-18 23:26:52 +02:00
scilab
scipy
scipy3	academic/scipy3: Updated for version 1.5.4.	2021-04-17 23:58:00 -05:00
seaview
seqkit
SeqMonk	academic/SeqMonk: update Copyright years	2021-05-18 23:40:04 +07:00
sequence-analysis
Shark	academic/Shark: Updated for version 4.0.1.	2021-04-18 02:00:20 -05:00
sigrok-cli
siril	academic/siril: Fixed dep info	2021-04-18 23:29:28 +02:00
smath-studio
snpEff
solfege
spades
speedcrunch	academic/speedcrunch: Fixed dep info	2021-04-18 23:30:16 +02:00
spiceopus
spidey
spqr
squizz
staden
STAR	academic/STAR: Updated for version 2.7.8a.	2021-03-06 11:11:55 +07:00
stellarium	academic/stellarium: Fixed dep info	2021-04-18 23:30:58 +02:00
stringtie
SU2
suitesparse
suitesparseconfig
sundials	academic/sundials: Fixed dep info	2021-04-18 14:45:45 -05:00
sword
sword-data-kjv	academic/sword-data-kjv: Updated for version 1.8.1_1.	2021-04-10 17:04:36 +07:00
t_coffee
tabix-legacy
tiemu
tilem
tilem2
tkgate
topdraw
tophat	academic/tophat: Patched for gcc >= 6.x.	2021-04-18 00:02:32 -05:00
treebest-ensembl
TreeGraph	academic/TreeGraph: switch to adoptopenjdk	2021-05-18 23:40:04 +07:00
treerecs
treeviewx
trfind
trimmomatic
tuxmath
tuxtype2
ucsc-blat
ugene	academic/ugene: Fixed dep info	2021-04-18 23:33:11 +02:00
umfpack
units
vCAPS_coevolution
vcftools
verilator	academic/verilator: Fixed dep info	2021-04-18 23:33:46 +02:00
verilog
veusz	academic/veusz: Fixed dep info	2021-04-18 23:34:39 +02:00
ViennaRNA	academic/ViennaRNA: Fixed dep info	2021-04-18 22:38:49 +02:00
wehi-cellsymphony
wehi-deid
wehi-hackit
wehi-weasel
WEVOTE	academic/WEVOTE: update Copyright years	2021-05-18 23:40:04 +07:00
wmcalc
WordNet
wxMaxima	academic/wxMaxima: Fixed dep info	2021-04-18 14:45:45 -05:00
xcircuit
xephem
xflr5	academic/xflr5: Fixed dep info	2021-04-18 23:35:39 +02:00
xfoil
xiphos	academic/xiphos: Fixed dep info	2021-04-18 14:45:45 -05:00
xoscope
Xyce
z3
ZeGrapher	academic/ZeGrapher: Fixed dep info	2021-04-18 22:39:58 +02:00
zotero