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30 lines
1.3 KiB
Text
30 lines
1.3 KiB
Text
SeaView is a multiplatform, graphical user interface for multiple
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sequence alignment and molecular phylogeny. Important features are:
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1) SeaView reads and writes various file formats (NEXUS, MSF,
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CLUSTAL, FASTA, PHYLIP, MASE, Newick) of DNA and protein sequences
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and of phylogenetic trees.
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2) SeaView drives programs muscle or clustalw for multiple sequence
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alignment, and also allows to use any external alignment algorithm
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able to read and write FASTA-formatted files.
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3) SeaView computes phylogenetic trees by
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a) parsimony, using PHYLIP's dnapars/protpars algorithm,
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b) distance, with NJ or BioNJ algorithms on a variety of
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evolutionary distances,
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c) maximum likelihood, driving program PhyML 3.0.
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4) SeaView draws phylogenetic trees on screen, PDF or PostScript files
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5) SeaView allows to download sequences from EMBL/GenBank/UniProt
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using the Internet.
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For details and citation:
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Gouy M., Guindon S. & Gascuel O. (2010) SeaView version 4 : a
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multiplatform graphical user interface for sequence alignment and
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phylogenetic tree building. Molecular Biology and Evolution
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27(2):221-224.
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Seaview requires fltk as a build depencency, but you need clustalw,
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PhyML and muscle, which SeaView drives. All of these are available at
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SlackBuilds.org.
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