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3D-ICE
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abntex
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acl2
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aenig4
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aeskulap
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aline
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aliview
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AlphaPlot
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amd
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amplicon
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amplifx
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antiprism
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archaeopteryx
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aris
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arka
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armadillo
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arpack
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arpack-ng
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academic/arpack-ng: Updated for version 3.9.1
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2024-01-13 07:14:25 +07:00 |
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artha
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AstroImageJ
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academic/AstroImageJ: Update to 5.3.2.00
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2024-01-22 09:40:26 +07:00 |
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avl
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avogadroapp
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academic/avogadroapp: Update README.
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2023-11-06 06:10:13 +07:00 |
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avogadrolibs
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academic/avogadrolibs: Update README.
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2023-11-06 06:09:03 +07:00 |
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bcftools
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academic/bcftools
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2024-05-04 21:45:02 +07:00 |
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bedGraphToBigWig
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bedtools
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biblesync
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bibletime
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bibus
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biopython
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boinc
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academic/boinc: Updated for version 7.24.1
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2024-01-20 09:16:23 +07:00 |
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bowtie
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bowtie2
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academic/bowtie2: Upgrade to version 2.5.4
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2024-07-28 07:26:37 +07:00 |
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bowtie2-legacy
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bpp-core
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bpp-phyl
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bpp-phyl-omics
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bpp-popgen
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bpp-seq
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bpp-seq-omics
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bpp1.9-numcalc
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bpp1.9-phyl
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bpp1.9-seq
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bpp1.9-utils
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bppsuite
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academic/bppsuite: Fix redundant deps.
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2023-12-22 07:59:38 +07:00 |
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btf
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bwa
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cadabra2
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academic/cadabra2: Update script.
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2024-06-28 19:01:24 +07:00 |
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CAFS_divergence
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calc
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calcoo
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camd
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cap3
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CAPS_coevolution
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cblas
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academic/cblas: Updated for version 3.12.0
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2024-01-13 07:14:25 +07:00 |
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ccolamd
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cdo
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academic/cdo: Updated for version 2.4.3.
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2024-08-24 08:27:47 +07:00 |
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celestia
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chartgeany
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chemtool
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cholmod
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academic/cholmod: Fix redundant deps.
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2023-12-22 07:59:38 +07:00 |
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cistrome-CEAS
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cistrome-conductGO
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cistrome-extra
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cistrome-MACS
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cistrome-mdseqpos
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clark-ugene
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cld2
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clustalo
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clustalw
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clustalx
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colamd
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colin
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convertall
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copasi
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academic/copasi: Updated for version 4.44.295.
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2024-07-09 21:11:10 +07:00 |
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cryptominisat
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academic/cryptominisat: Fix build.
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2024-03-24 17:43:58 +07:00 |
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csparse
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cufflinks
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cutadapt
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cvc4
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academic/cvc4: Update dependencies.
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2023-12-02 07:54:23 +07:00 |
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cxsparse
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dakota
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academic/dakota: Fix redundant deps.
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2023-12-22 07:59:38 +07:00 |
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Data2FCS
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datamash
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DendroPy
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diamond
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dimod
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DRAMPower
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DRAMSim2
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DRAMsim3
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DRAMSys
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ds9
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dwave-cloud-client
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dwave-greedy
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dwave-hybrid
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dwave-inspector
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dwave-neal
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academic/dwave-neal: Fix redundant deps.
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2023-12-22 07:59:38 +07:00 |
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dwave-networkx
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dwave-ocean-sdk
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dwave-preprocessing
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dwave-system
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dwave-tabu
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dwavebinarycsp
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easy_spice
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ed-v6
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edsim51di
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academic/edsim51di: Updated for version 2.1.36.
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2024-09-08 08:28:58 +07:00 |
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elk
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EMBASSY
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EMBOSS
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engauge
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academic/engauge: Fix build.
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2024-05-21 10:53:26 +07:00 |
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ent
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academic/ent: Use https URLs.
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2024-03-23 08:17:07 +07:00 |
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ephem
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eprover
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equalx
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ess
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evopedia_qt
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exonerate
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extrema
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fann
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fastqc
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FastTree
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FCSalyzer
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fet
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academic/fet: Updated for version 6.25.0.
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2024-09-12 10:16:29 +07:00 |
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FigTree
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fiji
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finchtv
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fityk
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academic/fityk: Fix redundant deps.
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2023-12-22 07:59:39 +07:00 |
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flann
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flexbar
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academic/flexbar: incl. patches for newer tbb
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2023-11-08 00:02:01 +07:00 |
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free42
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FreeFem
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academic/FreeFem: Updated for version 4.14.
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2023-12-13 01:48:21 +07:00 |
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g3data
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Gabedit
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gaiasky
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academic/gaiasky: Updated for version 3.6.3.
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2024-08-27 12:38:28 +07:00 |
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galculator
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gaw3
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Gblocks
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gchemutils
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gcompris-qt
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academic/gcompris-qt: Updated for version 4.1.
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2024-05-22 22:29:49 +07:00 |
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gdstk
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academic/gdstk: Added (GDSII / OASIS file library).
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2023-12-09 07:50:06 +07:00 |
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geda-gaf
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gelemental
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gem5
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geneconv
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genius
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genometools
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genpak
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GeoGebra
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geomview
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gephi
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academic/gephi: Fix .info.
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2024-08-08 13:26:09 +07:00 |
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gerbv
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academic/gerbv: Updated for version 2.10.0.
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2024-01-08 10:06:20 +07:00 |
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getdp
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getfem
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ggobi
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ghemical
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glpk
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glvis
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gmsh
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academic/gmsh: Updated for version 4.13.1.
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2024-06-18 10:14:30 +07:00 |
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gnucap
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gp2fasta
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gplates
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academic/gplates: Added (plate tectonics program).
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2024-02-10 16:17:21 +07:00 |
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gpredict
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academic/gpredict: Added aarch64 flags
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2024-01-19 09:51:03 +07:00 |
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grace
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gresistor
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gretl
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gri
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academic/gri: Updated for version 2.12.7
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2024-05-11 06:51:48 +07:00 |
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Gridcoin-Research
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academic/Gridcoin-Research: Updated for version 5.4.8.0
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2024-05-04 21:45:29 +07:00 |
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gromacs
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grpn
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gspiceui
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gtkwave
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gtypist
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gwyddion
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academic/gwyddion: Updated for version 2.66.
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2024-06-01 12:12:00 +07:00 |
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h5utils
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harminv
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hdfview
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academic/hdfview: Added (visualization and exploration software).
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2023-11-19 21:08:04 +07:00 |
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HMMER
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hyphy
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IGV
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io_lib
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iqtree
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irsim
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Isabelle
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isoelectric-point
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iTest
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itex2mml
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ITK
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academic/ITK: Fix build.
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2024-03-12 23:46:52 +07:00 |
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jalview
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jellyfish_k-mer
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jpicedt
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kalign
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karma
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kissat
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academic/kissat: Added (SAT solver).
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2024-04-14 12:05:18 +07:00 |
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klavaro
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klu
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academic/klu: Fix redundant deps.
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2023-12-22 07:59:39 +07:00 |
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knime
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kraken
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Kst
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ktikz
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kurso
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labplot2
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academic/labplot2: Updated for version 2.11.1.
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2024-08-20 10:46:00 +07:00 |
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ladr
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laghos
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lalnview
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lammps
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academic/lammps: Remove doinst.sh.
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2024-04-17 14:55:21 +07:00 |
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lapack95
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lapacke
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academic/lapacke: Updated for version 3.12.0
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2024-01-13 07:14:25 +07:00 |
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latex2html
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ldl
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libghemical
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locarna
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louvain-community
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academic/louvain-community: Fix github URL.
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2024-04-05 15:18:04 +07:00 |
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lpsolve
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mafft
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magic
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academic/magic: Updated for version 8.3.474.
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2024-05-11 06:51:54 +07:00 |
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mathics
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mathjax2
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mathomatic
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matio
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maxima
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meep
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academic/meep: Fix redundant deps.
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2023-12-22 07:59:39 +07:00 |
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megax
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meme-db-gomo
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meme-db-motif
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meme-db-tgene
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meme-suite
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mendeleydesktop
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metalwalls
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MetaPhlAn2
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academic/MetaPhlAn2: Fix github URL.
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2024-04-05 15:18:04 +07:00 |
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metis
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mfem
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minorminer
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mkDSSP
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molden
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academic/molden: Added (Molecular Density Viewer).
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2024-06-04 19:59:35 +07:00 |
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molequeue
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mpb
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mrbayes
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mumsa
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muscle
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muscle5
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ncbi-blast
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ncbi-blast+
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ncbi-edirect
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academic/ncbi-edirect: Updated for version 20.5.20231007.
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2023-10-14 10:32:26 +07:00 |
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ncbi-rmblastn
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nco
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academic/nco: Updated for version 5.2.8.
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2024-09-03 13:49:53 +07:00 |
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ncview
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ngspice
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academic/ngspice: Updated for version 43.
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2024-07-17 22:39:07 +07:00 |
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novocraft
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NWChem
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octave
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academic/octave: Updated for version 9.2.0
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2024-07-13 07:47:27 +07:00 |
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openboard
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academic/openboard: Replaced backtick cmdsub.
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2024-07-20 08:09:03 +07:00 |
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OpenFOAM
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academic/OpenFOAM: Updated for version 11.
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2023-12-22 08:47:16 +07:00 |
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OpenMM
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OpenVSP
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academic/OpenVSP: Fix build.
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2024-06-25 06:10:28 +07:00 |
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pal2nal
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paml
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pamlX
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papi
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pari
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parmetis
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patsy
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pcalc
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pcb
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penaltymodel
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perlprimer
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PhyML
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pianobooster
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plasmidomics
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plus42
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academic/plus42: Updated for version 1.1.12.
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2024-06-01 00:33:25 +07:00 |
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pomoxis
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prank-msa
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primer3
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pspp
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academic/pspp: Updated for version 2.0.1.
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2024-05-04 21:45:16 +07:00 |
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pulseview
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PyAMG
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academic/PyAMG: Fix redundant deps.
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2023-12-22 07:59:38 +07:00 |
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pyCRAC
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academic/pyCRAC: Mark for x86_64.
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2024-07-28 07:55:13 +07:00 |
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pysam
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academic/pysam: Upgrade to version 0.22.1
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2024-07-28 07:34:07 +07:00 |
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python2-kiwisolver
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python2-scipy
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python3-ase
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academic/python3-ase: Fix redundant deps.
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2023-12-22 07:59:39 +07:00 |
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python3-scipy
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academic/python3-scipy: Fix PYTHONPATH.
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2024-04-05 15:18:20 +07:00 |
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qalculate-gtk
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academic/qalculate-gtk: Updated for version 3.22.0; new maintainer.
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2024-09-04 08:48:06 +07:00 |
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qcl
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qhull
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academic/qhull: Remove outdated octave symlinks.
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2024-01-16 14:36:14 +07:00 |
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qrupdate
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academic/qrupdate: Fix redundant deps.
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2023-12-22 07:59:40 +07:00 |
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qucs
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academic/qucs: Updated for version 0.0.20.
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2024-06-29 21:19:10 +07:00 |
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qucs-s
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academic/qucs-s: Updated for version 24.3.0.
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2024-07-26 12:02:58 +07:00 |
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qucsator
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academic/qucsator: Added (Circuit Simulator).
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2024-06-29 21:20:04 +07:00 |
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R
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academic/R: Updated for version 4.4.1.
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2024-09-14 23:36:46 +07:00 |
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ramulator
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RAxML
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rbio
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reduce-algebra
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academic/reduce-algebra: Orphaned.
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2024-09-07 08:51:14 +07:00 |
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RepeatMasker
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root
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academic/root: Updated for version 6.32.04 (+fix 32 bit)
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2024-08-23 21:37:39 +07:00 |
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rpy2
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academic/rpy2: Upgrade to version 3.5.16
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2024-04-15 10:00:33 +07:00 |
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sage
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academic/sage: Updated for 10.1
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2023-09-29 10:35:53 +07:00 |
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sage-bin
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samtools
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academic/samtools:Upgrade to 1.20
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2024-05-04 21:45:02 +07:00 |
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samtools-legacy
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scidavis
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academic/scidavis: Fix building on -current.
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2024-04-13 22:04:05 +07:00 |
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scilab
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scmutils
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academic/scmutils: Added (scm utils).
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2023-11-29 18:35:27 +07:00 |
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seaview
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seqkit
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SeqMonk
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sequence-analysis
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Shark
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sigrok-cli
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sim
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SimEng
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siril
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smath-studio
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academic/smath-studio: Updated for version 1.1.8763
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2024-05-04 21:45:29 +07:00 |
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snpEff
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solfege
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academic/solfege: New maintainer.
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2024-08-17 18:14:15 +07:00 |
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spades
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speedcrunch
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spiceopus
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spidey
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spqr
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academic/spqr: Fix redundant deps.
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2023-12-22 07:59:40 +07:00 |
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squizz
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staden
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STAR
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academic/STAR:Upgrade to version 2.7.11b
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2024-01-30 07:48:15 +07:00 |
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stellarium
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academic/stellarium: Updated for version 23.4.
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2024-01-09 08:45:39 +07:00 |
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stellarsolver
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academic/stellarsolver: Mark for x86_64 only.
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2024-05-04 21:45:22 +07:00 |
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stringtie
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SU2
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academic/SU2: Add network warning to README.
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2023-09-23 11:33:27 +07:00 |
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suitesparse
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academic/suitesparse: Ensure correct linking
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2023-11-25 22:12:39 +07:00 |
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suitesparseconfig
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sundials
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sword
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sword-data-kjv
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academic/sword-data-kjv: Replaced backtick cmdsub.
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2024-07-20 08:09:03 +07:00 |
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t_coffee
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tabix-legacy
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tiemu
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tilem
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tilem2
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tkgate
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topdraw
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tophat
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treebest-ensembl
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TreeGraph
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treerecs
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treeviewx
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trfind
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trimmomatic
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tuxmath
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tuxtype2
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ucsc-blat
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ugene
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umfpack
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academic/umfpack: Fix redundant deps.
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2023-12-22 07:59:40 +07:00 |
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units
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academic/units: Updated for version 2.23.
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2024-02-24 15:34:49 +07:00 |
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vCAPS_coevolution
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vcftools
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velocyto
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verilator
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verilog
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veusz
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ViennaRNA
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academic/ViennaRNA: patch to compile against swig_4.2
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2024-07-28 07:47:01 +07:00 |
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voro++
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wcalc
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academic/wcalc: Use correct sourceforge link.
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2024-01-27 15:37:51 +07:00 |
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wehi-cellsymphony
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wehi-deid
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wehi-hackit
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wehi-weasel
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WEVOTE
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wise
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wmcalc
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WolframEngine
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academic/WolframEngine: Updated for version 14.0.0.
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2024-04-13 22:03:51 +07:00 |
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WordNet
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academic/WordNet: New maintainer, fixes.
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2024-09-07 09:08:46 +07:00 |
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wxMaxima
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x48
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academic/x48: Fixed MD5SUM.
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2024-04-14 08:34:30 +07:00 |
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xcircuit
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xephem
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xflr5
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academic/xflr5: gzip patches.
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2023-12-29 18:49:32 +07:00 |
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xfoil
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xiphos
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academic/xiphos: fix script typo
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2024-07-30 01:12:41 +07:00 |
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xoscope
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xschem
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academic/xschem: Update script.
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2023-12-06 10:09:31 +07:00 |
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xsimd
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academic/xsimd: Updated for version 13.0.0.
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2024-05-25 11:47:40 +07:00 |
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yices2
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z3
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ZeGrapher
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zotero
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academic/zotero: updated for version 7.0.5
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2024-09-14 21:42:53 +07:00 |
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zotero-gtk2
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