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31 lines
1.2 KiB
Text
31 lines
1.2 KiB
Text
SeaView is a multiplatform, graphical user interface for multiple
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sequence alignment and molecular phylogeny. Important features are:
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1) SeaView reads and writes various file formats (NEXUS, MSF, CLUSTAL,
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FASTA, PHYLIP, MASE, Newick) of DNA and protein sequences and of
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phylogenetic trees.
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2) SeaView drives programs muscle or Clustal Omega (clustalo) for
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multiple sequence alignment, and also allows to use any external
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alignment algorithm able to read and write FASTA-formatted files.
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3) Seaview drives the Gblocks program to select blocks of
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evolutionarily conserved sites.
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4) SeaView computes phylogenetic trees by
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a) parsimony, using PHYLIP's dnapars/protpars algorithm
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b) distance, with NJ or BioNJ algorithms on a variety of
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evolutionary distances,
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c) maximum likelihood, driving program PhyML 3.1.
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5) SeaView prints and draws phylogenetic trees on screen, SVG, PDF or
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PostScript files.
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6) SeaView allows to download sequences from EMBL/GenBank/UniProt
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using the Internet.
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For details and citation:
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Gouy M., Guindon S. & Gascuel O. (2010) SeaView version 4 : a
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multiplatform graphical user interface for sequence alignment and
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phylogenetic tree building. Molecular Biology and Evolution
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27(2):221-224.
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