slackbuilds_ponce/academic/staden
Petar Petrov 9d8a8a88ef academic/staden: Updated for version 2.0.0b10.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2014-01-29 23:21:16 -06:00
..
desktop
doinst.sh
README academic/staden: Updated for version 2.0.0b10. 2014-01-29 23:21:16 -06:00
References
slack-desc various: Fix slack-desc formatting and comment nit picks. 2013-11-22 02:29:22 -05:00
staden.info academic/staden: Updated for version 2.0.0b10. 2014-01-29 23:21:16 -06:00
staden.SlackBuild academic/staden: Updated for version 2.0.0b10. 2014-01-29 23:21:16 -06:00

The programs part of the Staden package provide an excellent and fully
developed set of DNA sequence assembly, editing, analysis and more.

Some of its features include:
GAP4 - Performs assembly, contig joining, assembly checking, repeat
       search, experiment suggestion, read pair analysis and contig
       editing.
GAP5 - The new development version of Gap4, designed to work with the
       large volumes of data attainable through the newer sequencing
       technologies.
PREGAP4 - Provides a graphical user interface to set up the processing
          required to prepare trace data for assembly or analysis.
SPIN - Compares pairs of sequences in many ways, often presenting its
       results graphically and has a sliding sequence window linked to
       the plots.
TREV - A rapid and flexible viewer and editor for ABI, ALF or SCF
       trace files.

For more information and citing, visit Staden's web page and check the
"References" file in the documentation.