brobr 7521abef93 academic/pysam: Use internal htslib-1.14 ... Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>		2022-03-05 08:20:12 +07:00
..
abntex	academic/abntex: Updated for version 20200715_f0a4d3c.	2022-02-27 22:29:04 -06:00
aenig4
aline
aliview	academic/aliview: Use zulu-openjdk11.	2022-03-03 15:56:48 +07:00
amd
amplicon
amplifx
antiprism
archaeopteryx	academic/archaeopteryx: Use zulu-openjdk11.	2022-03-03 15:56:50 +07:00
aris	academic/aris: Fix for gcc >= 10.x.	2022-02-27 22:29:04 -06:00
arka
armadillo
arpack
arpack-ng
artha
avl
bcftools	academic/bcftools: Update to version 1.15	2022-03-05 08:18:20 +07:00
bedGraphToBigWig
bedtools
biblesync
bibletime
bibus
biopython
boinc	academic/boinc: Use MAKEFLAGS to pass numjobs.	2022-02-27 22:29:03 -06:00
bowtie
bowtie2
bowtie2-legacy	academic/bowtie2-legacy: Patch source.	2022-03-03 09:38:11 +00:00
btf
bwa
cadabra2
CAFS_divergence
calc
calcoo	various: Use zulu jdk builds for REQUIRES.	2022-03-03 15:56:51 +07:00
camd
cap3	academic/cap3: Note the need to download the tarballs manually.	2022-02-27 22:29:05 -06:00
CAPS_coevolution
cblas
ccolamd
cdo
celestia
chartgeany
chemtool
cholmod
cistrome-CEAS
cistrome-conductGO
cistrome-extra
cistrome-MACS	academic/cistrome-MACS: Handle content-disposition download.	2022-03-05 00:18:21 +13:00
cistrome-mdseqpos
clark-ugene
cld2
clustalo
clustalw
clustalx	academic/clustalx: Patch for qt5.	2022-02-27 22:29:05 -06:00
colamd
colin	academic/colin: Use qt4.	2022-02-27 22:29:05 -06:00
convertall
copasi
cryptominisat
csparse
cufflinks
cutadapt
cvc4	various: Use zulu jdk builds for REQUIRES.	2022-03-03 15:56:51 +07:00
cxsparse
dakota	academic/dakota: Updated for version 6.15.0.	2022-02-27 22:29:05 -06:00
Data2FCS	academic/Data2FCS: Use zulu-openjdk11.	2022-03-03 15:56:48 +07:00
datamash
DendroPy
diamond
ds9
easy_spice
ed-v6	academic/ed-v6: Fix github tarball handling.	2022-03-01 19:35:43 +07:00
edsim51di	academic/edsim51di: Update DOWNLOAD to https.	2022-03-04 02:48:05 +00:00
EMBASSY
EMBOSS	academic/EMBOSS: Use zulu-openjdk11.	2022-03-03 15:56:48 +07:00
engauge	academic/engauge: Updated for version 12.1.	2022-02-27 22:29:05 -06:00
ent
eprover
equalx
ess
evopedia_qt	academic/evopedia_qt: Use qt4.	2022-02-27 22:29:05 -06:00
exonerate
extrema
fann
fastqc	various: Use zulu jdk builds for REQUIRES.	2022-03-03 15:56:51 +07:00
FCSalyzer	academic/FCSalyzer: Handle url-encoded filenames.	2022-03-05 00:17:45 +13:00
fet
fiji
finchtv
fityk	academic/fityk: Updated for version 20210925_e022356.	2022-02-27 22:29:05 -06:00
flann
flexbar
free42
FreeFem
g3data	academic/g3data: Update github tarball handling.	2022-03-01 19:35:44 +07:00
galculator
gaw3
Gblocks	academic/Gblocks: Fix download.	2022-02-27 22:29:06 -06:00
gchemutils	academic/gchemutils: Use the C++14 standard.	2022-02-27 22:29:05 -06:00
gcompris-qt
geda-gaf
gelemental
geneconv
genius	academic/genius: Updated for version 1.0.27.	2022-02-27 22:29:05 -06:00
genometools
genpak
GeoGebra	academic/GeoGebra: Use zulu-openjdk7.	2022-03-03 15:56:45 +07:00
geomview
gerbv	academic/gerbv: Fix for gcc >= 10.x.	2022-02-27 22:29:05 -06:00
getdp
ggobi
ghemical	academic/ghemical: Fix build.	2022-02-27 22:29:05 -06:00
glpk
gmsh
gnucap
gp2fasta	academic/gp2fasta: Use qt4.	2022-02-27 22:29:05 -06:00
gpredict
grace
gresistor
gretl	academic/gretl: Updated for version 2022a.	2022-02-27 22:29:05 -06:00
gri
Gridcoin-Research	academic/Gridcoin-Research: Use MAKEFLAGS to pass numjobs.	2022-02-27 22:29:04 -06:00
grpn
gspiceui
gtkwave	academic/gtkwave: Updated for version 3.3.111.	2022-02-27 22:29:05 -06:00
gtypist
gwyddion
h5utils
harminv
HMMER
hyphy
IGV
io_lib
irsim
isoelectric-point	academic/isoelectric-point: Use qt4.	2022-02-27 22:29:06 -06:00
iTest	academic/iTest: Use qt4.	2022-02-27 22:29:06 -06:00
itex2mml
ITK
jalview	academic/jalview: Use zulu-openjdk11.	2022-03-03 15:56:49 +07:00
jellyfish_k-mer
jpicedt	various: Use zulu jdk builds for REQUIRES.	2022-03-03 15:56:51 +07:00
jugglinglab	various: Use zulu jdk builds for REQUIRES.	2022-03-03 15:56:51 +07:00
karma
kiwisolver
klavaro
klu
knime
kraken
Kst	academic/Kst: patch to fix the path for H5Cpp.h file	2022-03-03 15:56:37 +07:00
ktikz
kurso	academic/kurso: Updated for version 5.2.	2022-02-27 22:29:06 -06:00
labplot2
ladr
lalnview
lapack95
lapacke
latex2html
ldl
libghemical
link-grammar	various: Use zulu jdk builds for REQUIRES.	2022-03-03 15:56:51 +07:00
locarna
lpsolve
mafft
magic
mathics
mathjax2	academic/mathjax2: Fix github tarball handling.	2022-03-01 19:35:44 +07:00
mathomatic
matio
maxima
meep
megax
meme-db-gomo
meme-db-motif
meme-db-tgene
meme-suite
mendeleydesktop
MetaPhlAn2
metis
mkDSSP
Mnemosyne
mpb
mrbayes
muscle
ncbi-blast
ncbi-blast+
ncbi-rmblastn
nco
ncview
ngspice
novocraft
octave
openboard
OpenFOAM
pal2nal
paml
pamlX	academic/pamlX: Use qt4.	2022-02-27 22:29:06 -06:00
papi	academic/papi: Updated for version 6.0.0.1.	2022-02-27 22:29:06 -06:00
pari
parmetis
patsy
pcalc
pcb
perlprimer
PhyML
pianobooster	academic/pianobooster: Added the dependency ftgl.	2022-02-27 22:29:06 -06:00
plasmidomics
primer3
pspp	academic/pspp: Updated for version 1.4.1.	2022-02-27 22:29:06 -06:00
pulseview	academic/pulseview: Updated for version 20220225_4efbe9b.	2022-02-27 22:29:06 -06:00
PyAMG
pyCRAC	academic/pyCRAC: Update MD5SUM.	2022-03-04 03:30:43 +00:00
pyfits
pysam	academic/pysam: Use internal htslib-1.14	2022-03-05 08:20:12 +07:00
qalculate-gtk
qcl
qhull
qrupdate
qucs
R
RAxML
rbio
reduce-algebra
RepeatMasker
root
rpy2
sage
sage-bin
samtools	academic/samtools: Update to version 1.15	2022-03-05 08:18:59 +07:00
samtools-legacy
scidavis
scilab	various: Use zulu jdk builds for REQUIRES.	2022-03-03 15:56:51 +07:00
scipy
scipy3
seaview	academic/seaview: Removed the treerecs dependency (ftb).	2022-03-01 19:35:45 +07:00
seqkit
SeqMonk
sequence-analysis	academic/sequence-analysis: Use zulu-openjdk11.	2022-03-03 15:56:49 +07:00
Shark
sigrok-cli	academic/sigrok-cli: Updated for version 20220222_525f481.	2022-03-01 19:35:46 +07:00
siril	academic/siril: Updated for version 1.0.0_rc2, switch to meson.	2022-02-27 22:29:06 -06:00
smath-studio
snpEff	academic/snpEff: Use zulu-openjdk11.	2022-03-03 15:56:49 +07:00
solfege
spades
speedcrunch
spiceopus
spidey
spqr
squizz
staden
STAR
stellarium
stringtie
SU2
suitesparse
suitesparseconfig
sundials
sword
sword-data-kjv
t_coffee	academic/t_coffee: Updated for version 13.45.58.c355d11.	2022-03-01 19:35:46 +07:00
tabix-legacy
tiemu
tilem	academic/tilem: Fix for gcc >= 10.x.	2022-03-01 19:35:46 +07:00
tilem2
tkgate
topdraw
tophat	academic/tophat: Use -std=c++14.	2022-03-03 09:38:11 +00:00
treebest-ensembl
TreeGraph	academic/TreeGraph: Use zulu-openjdk11.	2022-03-03 15:56:48 +07:00
treeviewx
trfind
trimmomatic	academic/trimmomatic: Use zulu-openjdk11.	2022-03-03 15:56:49 +07:00
tuxmath	academic/tuxmath: Rename blits. Remove dupe lan player.	2022-03-04 09:46:12 +00:00
tuxtype2
ucsc-blat
ugene	academic/ugene: Use -std=c++11.	2022-03-03 23:16:51 +00:00
umfpack
units
vcftools
verilator	academic/verilator: Updated for version 4.218.	2022-03-04 03:50:53 +00:00
verilog	academic/verilog: Updated for version 11.0.	2022-03-03 10:24:49 +00:00
veusz
ViennaRNA
wehi-cellsymphony	academic/wehi-cellsymphony: Use zulu-openjdk11.	2022-03-03 15:56:49 +07:00
wehi-deid	academic/wehi-deid: Use zulu-openjdk11.	2022-03-03 15:56:49 +07:00
wehi-hackit	academic/wehi-hackit: Use zulu-openjdk11.	2022-03-03 15:56:49 +07:00
wehi-weasel	academic/wehi-weasel: Use zulu-openjdk11.	2022-03-03 15:56:48 +07:00
WEVOTE
wmcalc
WordNet
wxMaxima	academic/wxMaxima: Fix github tarball handling.	2022-03-01 19:35:44 +07:00
xcircuit
xephem
xflr5	academic/xflr5: Update DOWNLOAD.	2022-03-03 14:05:54 +00:00
xfoil
xiphos
xoscope
z3	academic/z3: Fix github tarball handling.	2022-03-01 19:35:44 +07:00
ZeGrapher
zotero