| .. |
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3D-ICE
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academic/3D-ICE: Added (Thermal Emulator Library).
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2022-12-03 11:30:33 +07:00 |
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abntex
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acl2
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academic/acl2: Added (Computational Logic for LiSP).
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2023-07-18 09:31:16 +07:00 |
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aenig4
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aeskulap
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aline
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aliview
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AlphaPlot
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amd
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academic/amd: Align with template.
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2023-05-20 11:17:28 +07:00 |
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amplicon
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amplifx
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academic/amplifx: Fix ARCH section.
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2023-05-20 11:17:57 +07:00 |
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antiprism
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archaeopteryx
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aris
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arka
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armadillo
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arpack
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arpack-ng
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academic/arpack-ng: Updated for version 3.9.0
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2023-08-19 09:15:34 +07:00 |
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artha
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avl
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avogadroapp
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avogadrolibs
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academic/avogadrolibs: Add VTK as optional dependency.
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2023-04-15 07:15:24 +07:00 |
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bcftools
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academic/bcftools: Updated for version 1.17.
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2023-04-15 07:15:39 +07:00 |
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bedGraphToBigWig
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bedtools
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academic/bedtools: Updated for version 2.31.0.
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2023-06-20 19:46:04 +07:00 |
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biblesync
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bibletime
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bibus
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biopython
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academic/biopython: Updated for version 1.81.
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2023-04-22 11:38:31 +07:00 |
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boinc
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academic/boinc: Fix rc.boinc variables, remove extraneous characters
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2023-05-13 19:27:30 +07:00 |
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bowtie
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academic/bowtie: Updated for version 1.3.1.
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2022-10-15 10:47:26 +07:00 |
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bowtie2
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academic/bowtie2: Updated for version 2.5.1.
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2023-04-15 07:15:38 +07:00 |
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bowtie2-legacy
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bpp-core
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bpp-phyl
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bpp-phyl-omics
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bpp-popgen
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bpp-seq
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bpp-seq-omics
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bpp1.9-numcalc
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bpp1.9-phyl
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bpp1.9-seq
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bpp1.9-utils
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bppsuite
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btf
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academic/btf: Align with template.
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2023-05-20 11:17:28 +07:00 |
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bwa
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cadabra2
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academic/cadabra2: Update REQUIRES.
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2023-04-29 18:11:43 +07:00 |
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CAFS_divergence
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academic/CAFS_divergence: Fix ARCH section.
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2023-05-20 11:17:57 +07:00 |
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calc
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academic/calc: Updated for version 2.14.1.5.
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2023-05-27 08:08:51 +07:00 |
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calcoo
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camd
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academic/camd: Align with template.
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2023-05-20 11:17:28 +07:00 |
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cap3
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CAPS_coevolution
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academic/CAPS_coevolution: Fix ARCH section.
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2023-05-20 11:17:57 +07:00 |
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cblas
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academic/cblas: Align with template.
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2023-05-20 11:17:28 +07:00 |
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ccolamd
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academic/ccolamd: Align with template.
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2023-05-20 11:17:29 +07:00 |
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cdo
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academic/cdo: Updated for version 2.2.2.
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2023-08-19 09:15:24 +07:00 |
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celestia
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chartgeany
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chemtool
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cholmod
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academic/cholmod: Align with template.
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2023-05-20 11:17:29 +07:00 |
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cistrome-CEAS
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cistrome-conductGO
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cistrome-extra
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cistrome-MACS
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cistrome-mdseqpos
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academic/cistrome-mdseqpos: Fix deps.
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2022-11-12 22:33:12 +07:00 |
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clark-ugene
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cld2
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clustalo
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clustalw
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clustalx
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colamd
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academic/colamd: Align with template.
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2023-05-20 11:17:29 +07:00 |
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colin
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academic/colin: Use template TMP assignment.
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2023-05-20 11:17:27 +07:00 |
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convertall
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copasi
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academic/copasi: Updated for version 4.40.278.
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2023-06-10 14:01:22 +07:00 |
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cryptominisat
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academic/cryptominisat: Updated for version 5.11.3.
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2022-10-15 10:47:22 +07:00 |
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csparse
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academic/csparse: Align with template.
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2023-05-20 11:17:29 +07:00 |
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cufflinks
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cutadapt
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cvc4
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cxsparse
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academic/cxsparse: Align with template.
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2023-05-20 11:17:29 +07:00 |
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dakota
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academic/dakota: Updated for version 6.17.0.
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2023-01-28 08:23:05 +07:00 |
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Data2FCS
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datamash
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DendroPy
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diamond
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dimod
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academic/dimod: Added (A shared API for samplers)
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2022-11-12 22:32:58 +07:00 |
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DRAMPower
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academic/DRAMPower: Fix github tarball handling.
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2022-11-26 09:11:46 +07:00 |
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DRAMSim2
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academic/DRAMSim2: Added (A cycle accurate DRAM simulator)
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2022-10-15 10:47:28 +07:00 |
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DRAMsim3
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academic/DRAMsim3: Fix github tarball handling.
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2022-11-05 21:15:16 +07:00 |
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DRAMSys
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academic/DRAMSys: Fix github tarball handling.
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2023-01-07 08:13:28 +07:00 |
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ds9
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academic/ds9: Updated for version 8.4.1.
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2023-02-04 07:19:56 +07:00 |
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dwave-cloud-client
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academic/dwave-cloud-client: Added (REST interface for D-Wave API)
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2022-11-12 22:32:58 +07:00 |
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dwave-greedy
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academic/dwave-greedy: Added (steepest descent solver for (BQM))
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2022-11-12 22:32:58 +07:00 |
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dwave-hybrid
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academic/dwave-hybrid: Added (Hybrid Async Decomposition Sampler)
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2022-11-12 22:32:59 +07:00 |
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dwave-inspector
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academic/dwave-inspector: Added (visualize D-Wave structured solver)
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2022-11-12 22:32:59 +07:00 |
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dwave-neal
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academic/dwave-neal: Update DEP.
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2023-04-29 09:30:05 +07:00 |
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dwave-networkx
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academic/dwave-networkx: Added (D-Wave Systems network exploration)
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2022-11-12 22:32:59 +07:00 |
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dwave-ocean-sdk
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academic/dwave-ocean-sdk: Fix deps.
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2022-11-19 10:08:09 +07:00 |
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dwave-preprocessing
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academic/dwave-preprocessing: Added (binary quadratic models tools)
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2022-11-12 22:32:59 +07:00 |
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dwave-system
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academic/dwave-system: Added (basic API for D-Wave system)
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2022-11-12 22:32:59 +07:00 |
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dwave-tabu
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academic/dwave-tabu: Added (C/C++ implementation of MST2 for QUBO)
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2022-11-12 22:32:59 +07:00 |
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dwavebinarycsp
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academic/dwavebinarycsp: Added (contruct binary quadratic models)
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2022-11-12 22:32:58 +07:00 |
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easy_spice
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ed-v6
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Daves unified names
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2023-05-06 08:28:36 +07:00 |
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edsim51di
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elk
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academic/elk: Fix SlackBuild permissions.
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2022-11-12 22:33:05 +07:00 |
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EMBASSY
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EMBOSS
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engauge
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ent
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ephem
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academic/ephem: Added (an astronomy program).
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2023-08-12 09:46:19 +09:00 |
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eprover
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equalx
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ess
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evopedia_qt
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exonerate
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extrema
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fann
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fastqc
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academic/fastqc: Remove .svn folders that were causing java-errors.
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2023-04-23 09:40:07 +07:00 |
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FCSalyzer
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fet
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academic/fet: Updated for version 6.9.5.
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2023-08-19 09:15:18 +07:00 |
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fiji
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academic/fiji: Fix ARCH section.
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2023-05-20 11:17:56 +07:00 |
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finchtv
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academic/finchtv: Fix ARCH section.
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2023-05-20 11:17:56 +07:00 |
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fityk
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academic/fityk: Updated for version 1.3.2.
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2023-04-08 09:16:26 +07:00 |
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flann
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flexbar
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free42
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FreeFem
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academic/FreeFem: Fix MD5SUM.
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2023-07-08 16:41:49 +07:00 |
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g3data
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Gabedit
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gaiasky
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academic/gaiasky: Updated for version 3.5.2.
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2023-07-30 16:52:00 +07:00 |
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galculator
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gaw3
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academic/gaw3: Updated for version 20220315.
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2023-04-01 09:14:08 +07:00 |
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Gblocks
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academic/Gblocks: Fix ARCH section.
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2023-05-20 11:17:57 +07:00 |
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gchemutils
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gcompris-qt
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academic/gcompris-qt: Updated for version 3.3.
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2023-06-10 09:28:37 +07:00 |
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geda-gaf
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gelemental
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academic/gelemental: Updated for version 2.0.2.
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2023-04-22 11:38:28 +07:00 |
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gem5
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academic/gem5: Added (open-source system-level & CPU simulator)
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2022-10-29 10:28:33 +07:00 |
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geneconv
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genius
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genometools
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genpak
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GeoGebra
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geomview
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academic/geomview: Updated for version 1.9.5.
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2023-02-04 07:19:52 +07:00 |
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gephi
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academic/gephi: Added (Open Graph Viz Platform).
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2023-07-19 10:00:21 +07:00 |
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gerbv
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getdp
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getfem
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academic/getfem: Fix deps.
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2022-11-12 22:33:19 +07:00 |
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ggobi
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ghemical
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glpk
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glvis
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academic/glvis: Added (finite element visualization tool).
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2022-11-25 14:22:50 +07:00 |
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gmsh
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academic/gmsh: Updated for version 4.11.1.
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2023-01-14 08:50:10 +07:00 |
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gnucap
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gp2fasta
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gpredict
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grace
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gresistor
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academic/gresistor: Align with template.
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2023-05-20 11:17:29 +07:00 |
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gretl
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gri
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Gridcoin-Research
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academic/Gridcoin-Research: Updated for version 5.4.5.0
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2023-04-29 18:11:56 +07:00 |
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gromacs
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academic/gromacs: Minor template nitpick.
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2023-02-18 10:07:13 +07:00 |
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grpn
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gspiceui
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academic/gspiceui: Updated for version 1.2.87.
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2023-06-03 10:38:23 +07:00 |
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gtkwave
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gtypist
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academic/gtypist: Updated maintainer info.
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2022-11-18 22:02:50 +07:00 |
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gwyddion
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academic/gwyddion: Updated for version 2.63.
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2023-06-22 23:08:54 +07:00 |
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h5utils
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academic/h5utils: Updated for version 1.13.2.
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2023-02-18 10:06:44 +07:00 |
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harminv
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academic/harminv: Updated for version 1.4.2.
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2023-02-18 10:06:44 +07:00 |
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HMMER
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hyphy
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academic/hyphy: Updated for version 2.5.50.
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2023-05-13 19:27:12 +07:00 |
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IGV
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academic/IGV: Updated for version 2.16.1.
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2023-04-22 11:38:31 +07:00 |
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io_lib
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academic/io_lib: Updated for version 1.15.0.
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2023-05-13 19:27:04 +07:00 |
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iqtree
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academic/iqtree: Updated for version 2.2.2.6.
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2023-06-20 19:48:03 +07:00 |
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irsim
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Isabelle
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academic/Isabelle: Added (proof assistant).
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2023-07-18 08:47:19 +07:00 |
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isoelectric-point
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iTest
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itex2mml
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ITK
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jalview
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academic/jalview: Updated for version 2.11.2.5.
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2023-04-21 09:30:11 +07:00 |
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jellyfish_k-mer
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jpicedt
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jugglinglab
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karma
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klavaro
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academic/klavaro: Updated for version 3.14.
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2022-12-31 09:14:42 +07:00 |
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klu
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academic/klu: Align with template.
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2023-05-20 11:17:29 +07:00 |
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knime
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kraken
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Kst
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academic/Kst: Updated for version 20221025_5fdd819.
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2023-02-22 12:09:51 +07:00 |
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ktikz
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kurso
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labplot2
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academic/labplot2: Fix double compilation.
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2023-08-19 09:15:16 +07:00 |
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ladr
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laghos
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academic/laghos: Added (LAGrangian High-Order Solver)
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2022-12-17 09:13:53 +07:00 |
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lalnview
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lapack95
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lapacke
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academic/lapacke: Align with template.
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2023-05-20 11:17:30 +07:00 |
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latex2html
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ldl
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academic/ldl: Align with template.
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2023-05-20 11:17:30 +07:00 |
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libghemical
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link-grammar
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locarna
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lpsolve
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mafft
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academic/mafft: Updated for version 7.520.
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2023-05-13 19:27:12 +07:00 |
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magic
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mathics
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academic/mathics: Fix deps.
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2022-11-12 22:33:12 +07:00 |
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mathjax2
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academic/mathjax2: Update maintainer's email
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2023-06-04 23:13:23 +07:00 |
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mathomatic
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matio
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academic/matio: Updated for version 1.5.23.
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2023-02-11 09:30:46 +07:00 |
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maxima
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academic/maxima: Updated for version 5.47.0.
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2023-07-02 21:01:11 +07:00 |
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meep
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academic/meep: Fix 32bit build.
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2023-07-22 15:52:46 +07:00 |
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megax
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academic/megax: Fix and mv ARCH sect.
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2023-05-20 11:17:56 +07:00 |
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meme-db-gomo
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meme-db-motif
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meme-db-tgene
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meme-suite
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academic/meme-suite: Updated for version 5.5.2.
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2023-05-13 19:27:11 +07:00 |
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mendeleydesktop
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academic/mendeleydesktop: Fix ARCH.
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2023-06-03 10:38:30 +07:00 |
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metalwalls
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academic/metalwalls: Added (Molecular modelling systems).
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2022-10-19 01:02:36 +07:00 |
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MetaPhlAn2
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academic/MetaPhlAn2: Fix ARCH and deps.
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2022-11-12 22:33:20 +07:00 |
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metis
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academic/metis: Align with template.
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2023-05-20 11:17:30 +07:00 |
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mfem
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academic/mfem: Added (library for finite element methods).
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2022-11-20 09:37:41 +07:00 |
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minorminer
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academic/minorminer: Added (heuristic tool for minor embedding).
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2022-11-12 10:48:01 +07:00 |
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mkDSSP
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molequeue
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mpb
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mrbayes
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mumsa
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muscle
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muscle5
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academic/muscle5: Added (MUSCLE 5: Next-generation MUSCLE)
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2022-10-15 10:47:28 +07:00 |
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ncbi-blast
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academic/ncbi-blast: Fix and mv ARCH sect.
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2023-05-20 11:17:56 +07:00 |
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ncbi-blast+
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academic/ncbi-blast+: Updated for version 2.14.0.
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2023-06-20 19:48:59 +07:00 |
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ncbi-rmblastn
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nco
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academic/nco: Updated for version 5.1.7.
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2023-07-29 07:29:50 +07:00 |
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ncview
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ngspice
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academic/ngspice: Updated for version 41.
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2023-08-19 09:15:20 +07:00 |
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novocraft
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NWChem
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academic/NWChem: Added (High-Performance Computational Chemistry)
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2022-12-10 07:43:12 +07:00 |
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octave
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academic/octave: Updated for version 8.3.0
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2023-08-19 09:15:33 +07:00 |
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openboard
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OpenFOAM
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OpenMM
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academic/OpenMM: Fix github tarball handling.
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2022-11-05 21:15:16 +07:00 |
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OpenVSP
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academic/OpenVSP: Moved from graphics. Updated for version 3.31.1.
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2023-01-21 10:22:03 +07:00 |
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pal2nal
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paml
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academic/paml: Updated for version 4.10.6.
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2023-04-22 11:38:27 +07:00 |
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pamlX
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academic/pamlX: Fix paml docs dir.
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2023-04-22 11:38:28 +07:00 |
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papi
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pari
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parmetis
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patsy
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academic/patsy: Fix deps.
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2022-11-12 22:33:12 +07:00 |
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pcalc
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pcb
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penaltymodel
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academic/penaltymodel: Added (penalty model solver).
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2022-11-12 10:49:57 +07:00 |
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perlprimer
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petsc
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academic/petsc: Fix deps.
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2022-11-12 22:33:16 +07:00 |
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PhyML
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pianobooster
|
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plasmidomics
|
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plus42
|
academic/plus42: Updated for version 1.0.21.
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2023-08-26 19:07:00 +07:00 |
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pomoxis
|
academic/pomoxis: Added (bioinformatics tools for nanopore research)
|
2023-03-18 09:50:22 +07:00 |
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prank-msa
|
|
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primer3
|
academic/primer3: Updated for version 2.6.1.
|
2023-06-20 19:52:38 +07:00 |
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pspp
|
academic/pspp: Updated for version 1.6.2.
|
2023-03-04 07:16:37 +07:00 |
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pulseview
|
|
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PyAMG
|
academic/PyAMG: Fix deps.
|
2022-11-12 22:33:11 +07:00 |
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pyCRAC
|
academic/pyCRAC: Updated to version 1.5.2; crac_pipeline no longer included (see README)
|
2023-04-15 06:41:28 +07:00 |
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pyfits
|
academic/pyfits: Align with template.
|
2023-05-20 11:17:27 +07:00 |
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pysam
|
academic/pysam: Updated for version 0.21.0.
|
2023-04-15 07:15:38 +07:00 |
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python2-kiwisolver
|
academic/python2-kiwisolver: Align with template.
|
2023-05-20 11:17:41 +07:00 |
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python2-scipy
|
academic/python2-scipy: Align with template.
|
2023-05-20 11:17:41 +07:00 |
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python3-ase
|
academic/python3-ase: Added (Atomic Simulation Environment (ASE))
|
2022-12-10 07:43:12 +07:00 |
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python3-scipy
|
academic/python3-scipy: New maintainer
|
2023-06-15 21:39:49 +07:00 |
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qalculate-gtk
|
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qcl
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qhull
|
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qrupdate
|
academic/qrupdate: Align with template.
|
2023-05-20 11:17:30 +07:00 |
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qucs
|
|
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qucs-s
|
academic/qucs-s: Updated for version 2.0.0.
|
2023-09-02 18:02:34 +07:00 |
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R
|
academic/R: Updated for version 4.3.1.
|
2023-07-02 23:21:19 +07:00 |
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ramulator
|
academic/ramulator: Fix github tarball handling.
|
2022-11-26 09:11:46 +07:00 |
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RAxML
|
|
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rbio
|
academic/rbio: Align with template.
|
2023-05-20 11:17:27 +07:00 |
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reduce-algebra
|
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RepeatMasker
|
|
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root
|
academic/root: do not download and use gtest
|
2023-04-05 14:52:11 +07:00 |
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rpy2
|
academic/rpy2: Updated for version 3.5.10.
|
2023-04-15 07:15:38 +07:00 |
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sage
|
academic/sage: Updated for version 10.0.
|
2023-08-05 10:08:48 +07:00 |
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sage-bin
|
|
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samtools
|
academic/samtools: Updated for version 1.17.
|
2023-04-15 07:15:39 +07:00 |
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samtools-legacy
|
|
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scidavis
|
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scilab
|
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seaview
|
academic/seaview: treerecs added to REQUIRES.
|
2023-04-22 11:38:31 +07:00 |
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seqkit
|
academic/seqkit: Fix ARCH sect.
|
2023-05-20 11:17:56 +07:00 |
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SeqMonk
|
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sequence-analysis
|
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Shark
|
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sigrok-cli
|
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SimEng
|
academic/SimEng: Fix github tarball handling.
|
2022-11-26 09:11:46 +07:00 |
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siril
|
|
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smath-studio
|
academic/smath-studio: Updated for version 1.0.8348
|
2022-12-03 11:46:53 +07:00 |
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snpEff
|
|
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solfege
|
|
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spades
|
academic/spades: Updated for version 3.15.5.
|
2023-04-21 09:30:46 +07:00 |
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speedcrunch
|
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spiceopus
|
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spidey
|
academic/spidey: Fix and mv ARCH sect.
|
2023-05-20 11:17:56 +07:00 |
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spqr
|
academic/spqr: Align with template.
|
2023-05-20 11:17:30 +07:00 |
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squizz
|
|
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staden
|
academic/staden: A few enhancements.
|
2023-05-13 19:27:12 +07:00 |
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STAR
|
academic/STAR: ugraded to version 2.7.10b
|
2022-11-24 22:14:26 +07:00 |
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stellarium
|
academic/stellarium: Updated for version 23.1.
|
2023-05-06 08:28:22 +07:00 |
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stellarsolver
|
|
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stringtie
|
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SU2
|
academic/SU2: Updated for version 7.5.1.
|
2023-07-08 09:18:36 +07:00 |
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suitesparse
|
academic/suitesparse: Updated for version 5.13.0
|
2023-07-02 23:21:23 +07:00 |
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suitesparseconfig
|
academic/suitesparseconfig: Align with template.
|
2023-05-20 11:17:30 +07:00 |
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sundials
|
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sword
|
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sword-data-kjv
|
academic/sword-data-kjv: Updated for version 1.9.0_2.
|
2023-07-29 08:13:30 +07:00 |
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t_coffee
|
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tabix-legacy
|
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tiemu
|
academic/tiemu: New maintainer.
|
2023-02-25 09:18:10 +07:00 |
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tilem
|
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tilem2
|
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tkgate
|
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topdraw
|
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tophat
|
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treebest-ensembl
|
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TreeGraph
|
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treerecs
|
academic/treerecs: Added (Treerecs: a tree reconciliation tool)
|
2023-04-22 11:38:30 +07:00 |
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treeviewx
|
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trfind
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trimmomatic
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tuxmath
|
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tuxtype2
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ucsc-blat
|
academic/ucsc-blat: Fix and mv ARCH sect, http->https.
|
2023-05-20 11:17:56 +07:00 |
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ugene
|
academic/ugene: Updated for version 47.0.
|
2023-06-20 19:56:35 +07:00 |
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umfpack
|
academic/umfpack: Align with template.
|
2023-05-20 11:17:31 +07:00 |
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units
|
academic/units: Fix paths and run install-info
|
2023-08-05 10:08:41 +07:00 |
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vCAPS_coevolution
|
|
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vcftools
|
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velocyto
|
academic/velocyto: Use correct github URL.
|
2023-03-25 10:02:01 +07:00 |
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verilator
|
|
|
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verilog
|
academic/verilog: Fix download url.
|
2022-11-05 12:56:05 +07:00 |
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veusz
|
academic/veusz: Fix deps.
|
2022-11-12 22:33:18 +07:00 |
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ViennaRNA
|
academic/ViennaRNA: Fix build.
|
2023-03-11 21:19:45 +07:00 |
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voro++
|
academic/voro++: Added (A 3D Voronoi cell software library)
|
2022-10-15 10:47:38 +07:00 |
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wehi-cellsymphony
|
|
|
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wehi-deid
|
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wehi-hackit
|
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wehi-weasel
|
|
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WEVOTE
|
|
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wmcalc
|
academic/wmcalc: Fix doinst.sh.
|
2022-12-31 09:14:48 +07:00 |
|
WolframEngine
|
academic/WolframEngine: Updated for version 13.2.0.
|
2023-03-11 21:15:48 +07:00 |
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WordNet
|
|
|
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wxMaxima
|
academic/wxMaxima: Use DESTDIR properly.
|
2023-07-08 16:41:57 +07:00 |
|
x48
|
|
|
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xcircuit
|
academic/xcircuit: Updated for version 3.10.30. New maintainer.
|
2023-03-25 10:01:45 +07:00 |
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xephem
|
academic/xephem: Updated for version 4.1.0.
|
2023-08-12 09:42:58 +09:00 |
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xflr5
|
|
|
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xfoil
|
|
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xiphos
|
academic/xiphos: Update DEP.
|
2023-02-25 08:54:00 +07:00 |
|
xoscope
|
academic/xoscope: Align with template.
|
2023-05-20 11:17:31 +07:00 |
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xsimd
|
academic/xsimd: New maintainer
|
2023-06-15 21:39:49 +07:00 |
|
yices2
|
academic/yices2: Added (Satisfiability modulo theories solver).
|
2022-11-05 12:46:15 +07:00 |
|
z3
|
|
|
|
ZeGrapher
|
|
|
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zotero
|
academic/zotero: Updated for version 6.0.26.
|
2023-05-06 08:28:18 +07:00 |
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zotero-gtk2
|
academic/zotero-gtk2: Added (Collect and share research sources)
|
2023-05-06 08:28:23 +07:00 |
b65b4c059b