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31 lines
804 B
Text
31 lines
804 B
Text
After install go fo /opt/RepeatMasker and run the RepeatMasker
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Configuration Program:
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# perl ./configure
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Paths are as follows:
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**PERL PROGRAM**
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/usr/bin/perl
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**REPEATMASKER INSTALLATION DIRECTORY**
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/opt/RepeatMasker
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**TRF PROGRAM**
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/usr/bin/trf
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Add a Search Engine:
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1. CrossMatch: you should obtain this yourself, with the proper
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license, following the instructions here http://www.phrap.org/
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2. RMBlast - NCBI Blast with RepeatMasker extensions: this is
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available from SBo.
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3. WUBlast/ABBlast (required by DupMasker): you should obtain this
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yourself, with the proper license, following the instructions here
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https://blast.advbiocomp.com/licensing/
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4. HMMER3.1 & DFAM: this is available from SBo.
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**RMBlast (rmblastn) INSTALLATION PATH**
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/usr/bin
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**HMMER INSTALLATION PATH**
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/usr/bin
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