mirror of
https://github.com/Ponce/slackbuilds
synced 2024-11-22 19:44:21 +01:00
15 lines
752 B
Text
15 lines
752 B
Text
Burrows-Wheeler Aligner (BWA) is an efficient program that aligns
|
|
relatively short nucleotide sequences against a long reference sequence
|
|
such as the human genome. It implements two algorithms, bwa-short and
|
|
BWA-SW. The former works for query sequences shorter than 200bp and the
|
|
latter for longer sequences up to around 100kbp. Both algorithms do
|
|
gapped alignment. They are usually more accurate and faster on queries
|
|
with low error rates.
|
|
|
|
A configuration file ("_aptx_configuration_file") will be used if it is
|
|
in your $HOME. An example configuration file is available in
|
|
/usr/share/archeopteryx.
|
|
|
|
If you use BWA-SW, please cite:
|
|
Li H. and Durbin R. (2010) Fast and accurate long-read alignment with
|
|
Burrows-Wheeler Transform. Bioinformatics, Epub.
|