slackbuilds_ponce/academic/EMBOSS
Petar Petrov 9855d21463 academic/EMBOSS: Updated for version 6.5.7.
Signed-off-by: Robby Workman <rworkman@slackbuilds.org>
2012-09-12 14:20:44 -05:00
..
doinst.sh
EMBOSS.desktop academic/EMBOSS: Updated for version 6.5.7. 2012-09-12 14:20:44 -05:00
EMBOSS.info academic/EMBOSS: Updated for version 6.5.7. 2012-09-12 14:20:44 -05:00
EMBOSS.png academic/EMBOSS: Updated for version 6.5.7. 2012-09-12 14:20:44 -05:00
EMBOSS.SlackBuild academic/EMBOSS: Updated for version 6.5.7. 2012-09-12 14:20:44 -05:00
patch-1-24 academic/EMBOSS: Updated with newest patches. 2011-10-21 15:59:16 -02:00
README academic/EMBOSS: Updated for version 6.5.7. 2012-09-12 14:20:44 -05:00
References academic/EMBOSS: Updated for version 6.5.7. 2012-09-12 14:20:44 -05:00
slack-desc academic/EMBOSS: Updated for version 6.5.7. 2012-09-12 14:20:44 -05:00

EMBOSS is "The European Molecular Biology Open Software Suite".

EMBOSS is a free Open Source software analysis package specially
developed for the needs of the molecular biology (e.g. EMBnet) user
community. The software automatically copes with data in a variety of
formats and even allows transparent retrieval of sequence data from
the web. Also, as extensive libraries are provided with the package,
it is a platform to allow other scientists to develop and release
software in true open source spirit. EMBOSS also integrates a range of
currently available packages and tools for sequence analysis into a
seamless whole. EMBOSS breaks the historical trend towards commercial
software packages.

Within EMBOSS you will find around hundreds of programs (applications)
covering areas such as:

- Sequence alignment
- Rapid database searching with sequence patterns
- Protein motif identification, including domain analysis
- Nucleotide sequence pattern analysis -- for example to identify CpG
  islands or repeats
- Codon usage analysis for small genomes
- Rapid identification of sequence patterns in large scale sequence
  sets
- Presentation tools for publication

Optional, run-time dependencies are clustalw and primer3 -- needed if
you want to use the wrappers emma and eprimer32.

For details and citation:
EMBOSS: The European Molecular Biology Open Software Suite (2000)
Rice,P. Longden,I. and Bleasby,A. Trends in Genetics 16, (6) pp276-277