mirror of
https://github.com/Ponce/slackbuilds
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143991a46e
This field used to make sense in our pre-git days, but the Signed-Off-By: line serves the same purpose (and even more) now, so APPROVED has been rejected. ;-) Signed-off-by: Robby Workman <rworkman@slackbuilds.org> |
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| PhyML.info | ||
| PhyML.SlackBuild | ||
| README | ||
| References | ||
| slack-desc | ||
PhyML is a software that estimates maximum likelihood phylogenies from alignments of nucleotide or amino acid sequences. It provides a wide range of options that were designed to facilitate standard phylogenetic analyses. The main strengths of PhyML lies in the large number of substitution models coupled to various options to search the space of phylogenetic tree topologies, going from very fast and efficient methods to slower but generally more accurate approaches. It also implements two methods to evaluate branch supports in a sound statistical framework (the non-parametric bootstrap and the approximate likelihood ratio test). For details and citation New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0. Guindon S., Dufayard J.F., Lefort V., Anisimova M., Hordijk W., Gascuel O. Systematic Biology, 59(3):307-21, 2010.